BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42800.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484775 jgi|Araly1|484775|fgenesh2_kg.5__767__AT3G42800.1 1437 0.0
> Ahg484775 jgi|Araly1|484775|fgenesh2_kg.5__767__AT3G42800.1
Length=1062
Score = 1437 bits (778), Expect = 0.0
Identities = 958/1044 (92%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 362 CTCATGGCTTTTCCTCAGAGAAAACGAACACCTTCTTTCTCTTCTTCTGTTCTTGACTCT 421
|||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CTCATGGCATTTCCTCAGAAAAAACGAACACCTTCTTTCTCTTCCTCTGTTCTTGACTCT 60
Query 422 GTTTACCGTTCTATCGACGAATCTGACGGTCTCCAAAGTGACCTAAAAGGATCCATCAAC 481
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 61 GTTTACCGTTCTATCGACGAATCCGACGGTCTCCAAAGTGACCTAAGAGGATCCATCAAC 120
Query 482 GAAAATGTATCTTCATCATCATCCTCACCATCACCAAACAAGAAAGACGACAAGCTTACA 541
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAAAATGTATCTTCATCATCATCTTCACCTTCACCAAACAAGAAAGACGACAAGCTTACA 180
Query 542 ACTCTAAGGCGAGCAATCATGGACGAAGAACACTGGCTTTACGCCCGAAGCAGCACCACT 601
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTCCGGCGAGCAATCATTGACGAAGAACACTGGCTTTACGCCCGAAGCAGCACCACT 240
Query 602 ACCACTAACTCCTCTGATTCCTCTTCTTTTTCCTCTTCCGAGGCAGAGTCATATCGAACA 661
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 ACCACTAATTCCTCGGATTCCTCTGCTTTTTCCTCTTCCGAGGCAGAGTCATATCGAACA 300
Query 662 AAGAGAAGGTTGAGAAAGCTTGCGGAACAAGGTAAAAGATCAGGTGATGAGAGACAGAGA 721
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AAGAGAAGGTTGAGAAAGCTTGCGGAACAAGGTAATAGATCAGGTGATGAGAGACAGAGA 360
Query 722 ACAAAGAGAACG--G-TAATGGACAACGATAGTAGATTGTTTTCCAAGTCCGATGATGAT 778
|||||||||||| | || | || || ||||| | || | |||||||| ||| |||||
Sbjct 361 ACAAAGAGAACGTCGGTACTAGATAATGATAG-A--TTCATCTCCAAGTCGGATAATGAT 417
Query 779 AAGAAGCCTAAAGCCGTGAAGATAATTGAGGAGCTAAAGAGATCGAAGCAGCCAGTGTCT 838
|| |||| ||||||| ||| ||| || |||||| |||||||| |||||||||||||||||
Sbjct 418 AAAAAGCTTAAAGCCATGACGATGATCGAGGAGATAAAGAGACCGAAGCAGCCAGTGTCT 477
Query 839 CCTGGAGCGCGTCTCACTAGCTTCCTCAACTCGATCTTCCAATCTAACGCCAAGAAAGTG 898
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 478 CCTGGAGCGCGTCTCACCAGCTTCCTCAACTCCATCTTTCAATCTAACGCCAAGAAAGTG 537
Query 899 AAGCTTTGTTCTGTCGGTAAGACAACAGACGTTAAGTCCTCATCCTCA--AA-GTCTTGC 955
||||||||||||||||||||||| |||||||| |||||||| |||||| || |||||||
Sbjct 538 AAGCTTTGTTCTGTCGGTAAGACCACAGACGTCAAGTCCTCTTCCTCATCAAAGTCTTGC 597
Query 956 TTCAGTCGAACAAGAAATAAAACCGacaacaacaacaacaacTGCAAGAAGTTGGAAAGG 1015
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 TTCAGTCGAACAAGATATAAAACCGACAACAACAACAACAACTGCCAGAAGTTGGAAAGA 657
Query 1016 TCTATAAGATTCTATCCGGTTAGAGTAACCATTGATGGAGACTGCAGAGACTATGCTCA- 1074
||||| ||||||||||| ||||||||||| || |||||||||| |||||||| || |||
Sbjct 658 TCTATCAGATTCTATCCCGTTAGAGTAACTATCGATGGAGACTACAGAGACTCTGTTCAC 717
Query 1075 AAAACACATTACTCGCGTGAGGAAACCAATTCCAGAATTTACCGCTAAGAAGAGTGTCAA 1134
|||| ||||||||||| ||| |||||||||||||||||||| || ||||||||| ||||
Sbjct 718 AAAAG-CATTACTCGCGAGAGAAAACCAATTCCAGAATTTACTGCCAAGAAGAGTATCAA 776
Query 1135 AGAGGAGATTAAGACCAACGATCATCACACTGAGTTTACTTGCATCACAAGAAATATAGG 1194
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 777 AGAGGAGATTAAAACCAAAGATCATCACACTGAGTTTACTTGCATCACAAGAAAGATCGG 836
Query 1195 TTTGAAGGATTTTGTGAGAAGTAACAAATATGAAGGTAAAGAAGAGGAGGAGGATGCTTG 1254
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 837 TTTGAAGGATTTTGTGAGAAGTAACAAATATGAAGGTAAAGAAGATGAGGATGATGTTTG 896
Query 1255 GAGTCACTCAAGTTCGGATCTGTTTGAGCTTGATAGTTACCGGATCGGTATGGGGCGGTA 1314
|||| |||| ||||| |||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 897 GAGTTACTCGAGTTCTGATCTGTTCGAGCTCGATAGTTACCGGATCGATATGGGGCGGTA 956
Query 1315 CTTAAAAGAACTTCCAGTCTATGAAACTACTGATTTCAAGACTAA-TCAAGCCATTGCTA 1373
||||||||||||||| ||||||||||||||||||||||||| ||| |||||| || ||||
Sbjct 957 CTTAAAAGAACTTCCGGTCTATGAAACTACTGATTTCAAGA-TAAATCAAGCTATCGCTA 1015
Query 1374 GAAG-CTTGCTTTTGTAGTGTTTT 1396
||| |||| ||||||||| ||||
Sbjct 1016 -AAGGCTTGGTTTTGTAGTCTTTT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5