BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42860.1
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323073 jgi|Araly1|323073|fgenesh1_pm.C_scaffold_5000617 1103 0.0
> Ahg323073 jgi|Araly1|323073|fgenesh1_pm.C_scaffold_5000617
Length=1014
Score = 1103 bits (597), Expect = 0.0
Identities = 858/979 (88%), Gaps = 37/979 (4%)
Strand=Plus/Plus
Query 71 ATGAAGA-AAATCACGATTCCGGTAGAATCTCTTGACGAAGAAGACGATTTCCTACTACA 129
||| ||| ||| ||||||| ||| |||||||||||||||||||| |||||||||||| |
Sbjct 1 ATGGAGAGAAA-CACGATTGAGGTCGAATCTCTTGACGAAGAAGATGATTTCCTACTAGA 59
Query 130 ACTCGCCGCAATTGAAGCTGAAGCAGCAGCGAAACGCCCTAGGGTTTCTTCTATACCGGA 189
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 AGTCGCCGCAATTGAAGCTGAAGCGGCAGCGAAACGCCCTAGGGTTTCTTCTATACCGGA 119
Query 190 AGGACCATACATGGCGGCTCTAAAAGGAAGCAAAAGTGATCAATGGCAGCAAAGTCCATT 249
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 120 AGGACCATACATGGCGGCTCTAAAGGGAAGCAAAAGTGAGCAATGGCAGCAAAGTCCGTT 179
Query 250 AAATCCCGCCTCTAAATCTCGCAGCGTCGCTGTTACCACCGGCGGTTTTCAAAGATCAGA 309
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 180 AAATCCCGCCTCTAAATCTCGCAGTGTTGCTGTTACCACCGGCGGTTTTCAAAGATCAGA 239
Query 310 CGGAGGAGGAGGCGTCGCCGGTGAACAAGATTTTCCGGAAAAGAGTTGTCCCTGTGGAGT 369
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 CGGAGGAGG---CGTCGCCGGTGAACAGGATTTTCCGGAGAAGAGTTGTCCCTGTGGAGT 296
Query 370 TGGTATCTGTTTGATTCTTACTTCAAATACACCGAAGAATCCAGGTCGCAAATTCTACAA 429
|||| | |||||| |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 297 TGGTCTTTGTTTGGTTCTTACTTCAACTACACCGAAGAATCCAGGACGCAAATTCTACAA 356
Query 430 GTGTCCCAATAGAGAGGAAAACGGTGGTTGTGGATTTTTCCAGTGGTGTGATGCGGTTCA 489
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 357 ATGTCCCAATAGAGAGGAAAACGGAGGTTGTGGATTTTTCCAATGGTGTGATGCGGTTCA 416
Query 490 GTCTTCTGGAACTAGTACTACTACTAGTAATAGCTATGGAAACGGTAATGATACTAAGTT 549
|||||||||||||| |||| | | |||| || | |||||| ||||||| |||||||
Sbjct 417 GTCTTCTGGAACTACTACT-C-A-TAGT--TA--T--GGAAACACTAATGATTCTAAGTT 467
Query 550 CCCGGATCATCAGTGTCCGTGTGGTGCGGGTTTGTGCCGTGTGTTGACTGCGAAAACAGG 609
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 468 CCCAGATCATCAATGTCCGTGTGGTGCGGGATTGTGCCGTGTTTTGACTGCGAAAACAGG 527
Query 610 CGAAAACGTTGGCCGTCAGTTTTATCGATGTCCTGTTTTTGAGGGCTCTTGTGGTTTCTT 669
||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 528 GGAAAATGTTGGCCGGCAGTTTTATCGCTGTCCTGTTTTGGAGGGCTCTTGTGGTTTCTT 587
Query 670 CAAATGGTGCAATGACAATGTAGTCAGCTCTCCTACGTCGTATAGTGTTACCAAAAACAG 729
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 588 CAAATGGTGCAATGACAATGCAGTTAGCTCTCCTACATCGTATAGTGTTACCAAAAACAG 647
Query 730 CAACTTTGGTGACTCAGATACCAGAGGATATCAAAATGCGAAA-ACGGGCACGCCCTGTT 788
|||||| |||||||||||||||||||||||||||| ||| ||| |||||| |||||||||
Sbjct 648 CAACTTAGGTGACTCAGATACCAGAGGATATCAAACTGC-AAAGACGGGCGCGCCCTGTT 706
Query 789 ATAAATGTGGGAAAGAAGGGCACTGGGCAAGAGATTGCACTGTTCAGTCTG--A-T---A 842
|||||||||| |||||||| |||||||| ||||| ||||| | ||| |||| | | |
Sbjct 707 ATAAATGTGGTAAAGAAGGACACTGGGCGAGAGACTGCACCGCTCAATCTGGCAATCCGA 766
Query 843 CG---G--G-A--CCA-GTAAAGTC-TACATCTGCA-GCTGGAGATTGTTTTAAATGCGG 891
|| | | | ||| || ||||| | | ||| || | |||||| |||| ||||||||
Sbjct 767 CGTATGAAGCAGGCCAAGTGAAGTCATCC-TCTTCAAG-TGGAGAATGTTACAAATGCGG 824
Query 892 AAAGCCAGGGCACTGGTCGAGAGATTGCACTGCTCAATCTGGTAATCC-CAAGTATGAAC 950
|||| ||| || ||| ||| ||| ||||| | |||||||||| |||| || || | ||
Sbjct 825 GAAGCAAGGACATTGGGCGAAAGACTGCACCGGTCAATCTGGTGATCCACA-GTTTCAAT 883
Query 951 CAGGGCAAATGAAGTCGTCATCTTCAAGTGGAGAATGTTACAAATGCGGGAAGCAAGGAC 1010
|| ||||| ||||| || | ||| ||||||| |||||||||||||| || | |||||
Sbjct 884 CAAGGCAAGCAAAGTCCACAACCTCAGGTGGAGATTGTTACAAATGCGGAAAACCAGGAC 943
Query 1011 ATTGGTCGAGAGACTGCAC 1029
||||| | ||||| |||||
Sbjct 944 ATTGGGCAAGAGATTGCAC 962
Score = 394 bits (213), Expect = 1e-108
Identities = 280/313 (89%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 878 TGTTTTAAATGCGG-AAAGCCAGGGCACTGGTCGAGAGATTGCACTGCTCAATCTGGTAA 936
|||| |||||| || |||| ||| |||||| ||||||| ||||| ||||||||||| ||
Sbjct 703 TGTTATAAATGTGGTAAAG-AAGGACACTGGGCGAGAGACTGCACCGCTCAATCTGGCAA 761
Query 937 TCCCAAGTATGAACCAGGGCAAATGAAGTCGTCATCTTCAAGTGGAGAATGTTACAAATG 996
||| | ||||||| |||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 762 TCCGACGTATGAAGCAGGCCAAGTGAAGTCATCCTCTTCAAGTGGAGAATGTTACAAATG 821
Query 997 CGGGAAGCAAGGACATTGGTCGAGAGACTGCACCGGTCAATCTAGTAATCAACAATTTCA 1056
||||||||||||||||||| ||| ||||||||||||||||||| || ||| ||| |||||
Sbjct 822 CGGGAAGCAAGGACATTGGGCGAAAGACTGCACCGGTCAATCTGGTGATCCACAGTTTCA 881
Query 1057 ATCAGGGCAAGCAAAATCCACATCCTCAACTGGAGATTGCTACAAATGCGGAAAAGCAGG 1116
|||| |||||||||| |||||| ||||| ||||||||| ||||||||||||||| ||||
Sbjct 882 ATCAAGGCAAGCAAAGTCCACAACCTCAGGTGGAGATTGTTACAAATGCGGAAAACCAGG 941
Query 1117 ACATTGGTCAAGAGATTGCACTTCCCCTGCTCAAACTACAAACACTCCAGGCAAAAGACA 1176
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 942 ACATTGGGCAAGAGATTGCACTTCGGCTGCTCAAACTACAAACACTCCAGGCAAAAGACA 1001
Query 1177 GAGGCAGTACTAG 1189
|||||||||||||
Sbjct 1002 GAGGCAGTACTAG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54583321085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5