BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G42880.1 Length=1902 Score E Sequences producing significant alignments: (Bits) Value Ahg347421 jgi|Araly1|347421|fgenesh1_pg.C_scaffold_5000813 2964 0.0 Ahg488975 jgi|Araly1|488975|fgenesh2_kg.6__2109__AT5G20690.1 798 0.0 > Ahg347421 jgi|Araly1|347421|fgenesh1_pg.C_scaffold_5000813 Length=1902 Score = 2964 bits (1605), Expect = 0.0 Identities = 1803/1902 (95%), Gaps = 0/1902 (0%) Strand=Plus/Plus Query 1 ATGACTGCTGTTCTATTTCTCTGCTTCCTTCTCATCTGTTTTTCCTTCACCCCTTCTCTA 60 ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | Sbjct 1 ATGACTGCTGTTCTATTTCTCTGCTTCCTTCTCCTCTGTTTCTCCTTCACCCCTTCTTTG 60 Query 61 CAAAACGTTAGTGAATCGGAACCGCTCGTGCGGTTCAAGCGCTCGGTGAATATAACTAAA 120 |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 CAAAACGTCAGTGAATCCGAACCGCTCGTGCGGTTCAAGAGCTCGGTGAATATAACTAAA 120 Query 121 GGAGACTTGAATTCATGGAGAACAGGAACCGATCCTTGCAATGGCAAATGGTTTGGGATC 180 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 GGAGATTTGAATTCATGGAGAACAGGAACCGATCCTTGCAATGGAAAATGGTTTGGGATC 180 Query 181 TATTGCCAAAAGGGTCAAACAGTTTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGG 240 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 TATTGCCAAAAGGGCCAAACAGTCTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGG 240 Query 241 ACCATCAACATTGAGGATTTAAAAGATCTCCCAAATCTAAGAACGATCAGGCTTGACAAC 300 ||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 241 ACCATCAACATCGAGGATTTAAAGGATCTTCCAAATCTAAGGACGATCAGGCTTGACAAC 300 Query 301 AATCTTCTCTCAGGTCCTCTCCCTCCTTTTTTCAAGCTACCTGGCTTGAAATCTCTTTTG 360 |||||||||||||| || ||||||||||||| |||||| || |||||||||||||||||| Sbjct 301 AATCTTCTCTCAGGCCCACTCCCTCCTTTTTACAAGCTTCCAGGCTTGAAATCTCTTTTG 360 Query 361 CTCTCAAACAATAGCTTTTCTGGTGAGATTGCTGATGATTTCTTCAAAGAAACGCCACAA 420 |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 361 CTCTCAAACAATAGCTTTTCCGGCGAGATTGCTGATGATTTCTTCAAGGAAACGCCACAA 420 Query 421 CTCAAGCGGGTTTTTCTTGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCTTTGATG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTCAAGCGGGTTTTTCTCGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCTTTGATG 480 Query 481 CAACTCGCAGGTCTTGAGGAGCTTCACATGCAAGGAAACCAGTTCACTGGTGAGATACCT 540 |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 481 CAACTCGCAGGTCTCGAGGAGCTTCACATGCAAGGCAACCAGTTCTCTGGTGAGATACCT 540 Query 541 CCTCTTACAGATGGCAACAAGGTTTTGAAATCCCTTGACCTCTCCAACAATGATCTAGAG 600 |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| Sbjct 541 TCTCTTACAGATGGCAACAAGGTTTTGAAATCCCTCGACCTCTCCAACAATGACCTGGAG 600 Query 601 GGAGAGATCCCAATAACCATTTCCGACAGGAAGAATCTAGAGATGAAATTCGAAGGGAAT 660 |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 601 GGAGAGATCCCAATAAGCATTTCCGAGAGGAAGAATCTAGAGATGAAATTTGAAGGAAAT 660 Query 661 CAGAGGCTTTGCGGGTCACCTCTGAATATAGAATGCGATGAGAAACCTTCATCTACAGGG 720 || | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 661 CAAAAGCTTTGCGGGTCACCTCTGAATATAGTATGCGATGAGAAACCTTCATCTACAGGG 720 Query 721 TCAGGGAATGAGAAGAATAACACTGCAAAAGCTATCTTTATGGTCATCTTGTTTCTATTG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 TCAGGGAATGAGAAGAATAACACTGCAAAAGCTATCTTTATGGTCATCTTGTTTCTTTTG 780 Query 781 ATATTCTTGTTTGTGGTAGCTATTATTACAAGATGGAAGAAGAAGAGGCAACCCGAGTTC 840 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 781 ATATTCTTGTTTGTGGTAGCGATTATTACTAGATGGAAGAAGAAGAGGCAACCCGAGTTC 840 Query 841 CGGATGCTCGGTAAAGACCACCTAAGCGACCAAGAGAGCGTGGAAGTTCGTGTACCGGAC 900 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 841 CGGATGCTCGGTAAAGACCACCTAAGCGACCAAGAGAGCGTGGAAGTCCGTGTACCAGAC 900 Query 901 TCAATAAAGAAGCCTATCGACTCGAGCAAGAAGCGTAGTAACGCAGAAGGTTCCTCAAAG 960 || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 901 TCGATAAAGAAGCCTATCGAGTCGAGCAAGAAGCGTAGCAACGCAGAAGGTTCCTCAAAA 960 Query 961 AAAGGTTCATCGCATAACGGAAAAGGTGCAGGAGGTGGTCCAGGAAGCGGAATGGGAGAC 1020 ||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||| Sbjct 961 AAAGGTTCATCACATAACGGAAAAGGTGGAGGTGGTGGTCCAGGAAGCGGCATGGGAGAC 1020 Query 1021 ATTATAATGGTAAACAGCGAGAAAGGCTCCTTTGGTTTACCTGATCTCATGAAGGCTGCA 1080 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1021 ATTATAATGGTCAACAGCGAGAAAGGCTCCTTTGGTTTACCCGATCTCATGAAGGCTGCA 1080 Query 1081 GCTGAGGTGCTAGGCAATGGTAGCCTTGGATCGGCCTACAAGGCGGTGATGGCCAACGGA 1140 || |||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1081 GCCGAGGTGTTAGGAAATGGTAGCCTTGGATCTGCCTATAAGGCGGTGATGGCCAACGGA 1140 Query 1141 TTATCCGTGGTTGTGAAAAGGATTAGGGATATGAACAAACTTGCACGTGAAGCATTCGAT 1200 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1141 TTATCCGTGGTTGTGAAAAGGATTAGGGATATGAACAAACTTGCACGTGATGCATTCGAT 1200 Query 1201 ACTGAGATGCAACGGTTCGGAAAACTCCGACACCCTAACGTTCTTACCCCTTTAGCTTAT 1260 |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1201 ACTGAGATGCAACGATTCGGGAAACTCCGACACCCTAACGTTCTTACCCCTCTAGCTTAT 1260 Query 1261 CACTATCGTCGAGAAGAGAAGCTTGTTGTCTCTGAATACATGCCTAAAAGCAGTCTACTC 1320 |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1261 CACTATCGCCGTGAAGAGAAACTTGTTGTCTCTGAATACATGCCTAAAAGCAGTCTACTC 1320 Query 1321 TACGTTTTGCACGGAGATCGTGGGGTTTATCATTCGGAGCTAACTTGGGCAACAAGATTG 1380 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1321 TACGTTTTGCACGGAGATCGTGGGGTTTATCATGCGGAGCTAACTTGGGCAACAAGGTTA 1380 Query 1381 AAGATCATACAAGGAGTGGCACGAGGAATGGACTTCTTGCATGAGGAGTTTGCGTCCTAC 1440 |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1381 AAGATCATCCAAGGAGTGGCACGTGGAATGGACTTCTTGCACGAGGAGTTTGCGTCCTAC 1440 Query 1441 GATCTTCCACATGGAAATCTCAAATCTAGCAACGTTCTACTAAGTGAAACCTATGAGCCA 1500 || || |||||||||||||||||||| ||||| |||||| |||||||||||||||||||| Sbjct 1441 GAGCTCCCACATGGAAATCTCAAATCCAGCAATGTTCTATTAAGTGAAACCTATGAGCCA 1500 Query 1501 TTGATTAGCGATTACGCGTTCCTCCCGCTTCTTCAGCCTAACAACGCCTCACAAGCTTTA 1560 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1501 TTGATTAGCGATTACGCGTTCCTCCCGCTTCTTCAGCCTAACAACGCCTCACATGCTTTA 1560 Query 1561 TTCGCGTTCAAATCCCCCGAGTTTGTACAAAACCAGCAGGTTTCACCAAAATCAGACGTC 1620 ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1561 TTCGCGTTCAAATCCCCTGAGTTCGTACAAAACCAGCAGATTTCACCAAAATCAGACGTC 1620 Query 1621 TATTGCCTTGGAATAATCGTTCTCGAGGTCATGACGGGGAAGTTCCCGTCTCAGTACCTA 1680 |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 1621 TATTGCCTTGGAATTATCGTTCTTGAGGTCATGACGGGGAAGTTCCCATCTCAATACCTA 1680 Query 1681 AATACTGGTAAAGGAGGGACGGATATAGTCGAATGGGTGCAATCTTCAATCGCACAACAT 1740 |||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1681 AATAATGGTAAAGGGGGGACGGATATAGTTGAATGGGTGCAATCTTCAATCGCACAACAT 1740 Query 1741 AAAGAAGAAGAGCTTATAGATCCCGAGATTGCGAGTAATACTGATTCGATAAAACAAATG 1800 |||||||||||||| |||||||| ||||| ||||||||||| ||||||| |||||||||| Sbjct 1741 AAAGAAGAAGAGCTGATAGATCCAGAGATAGCGAGTAATACCGATTCGACAAAACAAATG 1800 Query 1801 GTTGAATTGTTGCGGATCGGGGCTGCTTGTATCGCAAGTAACCCTAACGAGAGACAAAAC 1860 || ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| Sbjct 1801 GTGGAATTGTTGCGGATCGGGGCTTCTTGTATCGCAAGTAACCCTAATGAAAGACAAAAC 1860 Query 1861 ATGAAGGAGATTGTTAGAAGGATAGAACGAGTAACACTTTGA 1902 |||||||| |||||||||||||||||| ||||||||||||| Sbjct 1861 ATGAAGGAAATTGTTAGAAGGATAGAAAAAGTAACACTTTGA 1902 > Ahg488975 jgi|Araly1|488975|fgenesh2_kg.6__2109__AT5G20690.1 Length=1959 Score = 798 bits (432), Expect = 0.0 Identities = 803/978 (82%), Gaps = 42/978 (4%) Strand=Plus/Plus Query 949 GGTTCCTCAAAGAAAGG-TTCATCGCATAACGGAAAAGGT-G---C--AGGAGGTGGTCC 1001 |||||||| |||||||| || ||| ||| || |||||| | | |||||| | || Sbjct 1000 GGTTCCTCCAAGAAAGGCTT-GTCGAATATTGGTAAAGGTGGTAACGGAGGAGGAGCTCT 1058 Query 1002 AGGAAGCGGAATGGGAGACATTATAATGGT-AA-ACAGCGAGAAA-GGCTCCTTTGGTTT 1058 ||| |||| ||||| |||||||||||||| || || | || ||| || ||||||||||| Sbjct 1059 AGGCGGCGGGATGGGTGACATTATAATGGTGAATAC-G-GA-AAAGGGTTCCTTTGGTTT 1115 Query 1059 ACCTGATCTCATGAAGGCTGCAGCTGAGGTGCTAGGCAATGGTAGCCTTGGATCGGCCTA 1118 ||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct 1116 ACCCGATCTGATGAAGGCTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTA 1175 Query 1119 CAAGGCGGTGATGGCCAAC-GGATTATCCGTGGTTGTGAAAAGGATTAGGGATATGAA-C 1176 ||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| | Sbjct 1176 CAAGGCGGTGATGACC-ACTGGATTATCCGTTGTGGTGAAGAGGATTAGGGATATGAATC 1234 Query 1177 AAACTTGCACGTGAAGCATTCGATACT-GAGATGCA-ACGGTTCGGAAAACTCCGA-CAC 1233 |||||||||| ||| | |||||| | |||||| | ||| ||||| ||||||| | ||| Sbjct 1235 -AACTTGCACGCGAACCTTTCGAT-GTCGAGATG-AGACGATTCGGGAAACTCC-ACCAC 1290 Query 1234 CCTAACGTTCTTACCCCTTTAGCTTATCACTATCGTCGAGAAGAGAAGCTTGTTGTCTCT 1293 |||||| |||||||||||||||| |||||||| || || |||||||||||||| ||||| Sbjct 1291 CCTAACATTCTTACCCCTTTAGCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCC 1350 Query 1294 GAATACATGCCTAAAAGCAGTC-TACTCTACGTTTTGCACGGAGATCGTGGGGTTTATCA 1352 |||||||||||||||||||| | | || |||||||| || || ||||||||| | ||||| Sbjct 1351 GAATACATGCCTAAAAGCAG-CTTGCTTTACGTTTTACATGGTGATCGTGGGATATATCA 1409 Query 1353 TTCGGAGCTAACTTGGGCAACAAGATTGAAGATCATACAAGGAGTGGCACGA-GGAATGG 1411 ||| |||||||||||||||||||||||||||||||| ||||||||||| | | |||||| Sbjct 1410 TTCCGAGCTAACTTGGGCAACAAGATTGAAGATCATCCAAGGAGTGGCTC-ACGGAATGA 1468 Query 1412 ACTTCTTGCATGAGGAGTTTGCGTCCTACGATCTTCCACATGGAAATCTCAAATCTAGCA 1471 | |||||||| | ||||||||||||||||||||| ||||| || || |||||||| |||| Sbjct 1469 AGTTCTTGCACGGGGAGTTTGCGTCCTACGATCTCCCACACGGTAACCTCAAATCCAGCA 1528 Query 1472 ACGTTCTACTAAGTGAAACCTATGAGCCATTGATTAGCGATTACGCGTTCCTCCCGCTTC 1531 ||||||| || || || ||||||||||| ||||| ||||||||||||||| | ||||||| Sbjct 1529 ACGTTCTCCTCAGCGAGACCTATGAGCCTTTGATCAGCGATTACGCGTTCTTACCGCTTC 1588 Query 1532 TTCAGCCTAA-CAACGCCTCACAAGCTTTATTCGCGTTCAA-ATCCCCCGAGTTTGTACA 1589 | || || || |||||| || ||||| || || || ||||| | | |||||||| | || Sbjct 1589 TCCAACC-AAGCAACGCATCGCAAGCATTGTTTGCTTTCAAGA-CGCCCGAGTTCGCGCA 1646 Query 1590 AA-ACCAGCAGGTTTCACCA-AAATCAGACGTCTATTGCCTTGGAATAATCGTTCTCGAG 1647 | || | ||||| || | | |||||||||||||| ||||| ||||| || |||| ||| Sbjct 1647 GACACAA-CAGGTCTCTC-ATAAATCAGACGTCTACTGCCTCGGAATTATAATTCTAGAG 1704 Query 1648 GTCATGACGGGGAAGTTCCCGTCTCAGTACCTAAATA-CTGGTAAAGGAGGGACGGATAT 1706 || |||||||||| ||||| ||||| ||| |||| | | |||||||| ||||| ||||| Sbjct 1705 ATCTTGACGGGGAAATTCCCTTCTCAATACTTAAACAAC-GGTAAAGGCGGGACTGATAT 1763 Query 1707 AGT-CGAATGGGTGCAATCTTCAATCGCACAACATAAAGAAGAAGAGCTTATAGATCCCG 1765 ||| | ||||||| |||||||| | | | || ||||||||||| ||||| ||||| | Sbjct 1764 AGTTC-AATGGGTACAATCTTCGGTTTCGGAGCAAAAAGAAGAAGAACTTATCGATCCGG 1822 Query 1766 AGATTGCGAGTAATACTGATTCGATAAAACAAATGGTTGAATTGTTGCGGATCGGGGCTG 1825 |||| | | |||||||| || || ||| ||||| |||||||||||| | ||||||| Sbjct 1823 AGATAGTAAACAATACTGAATCAATGCGACAGATGGTGGAATTGTTGCGGGTTGGGGCTG 1882 Query 1826 CTTGTATCGCAAGTAACCCTA-ACGAGAGACAAAACATGAAGGAGATTGTTAGAAGGATA 1884 |||||||||||||||| || | | |||||| | |||||| ||| | ||||||||||||| Sbjct 1883 CTTGTATCGCAAGTAATCC-AGATGAGAGATTAGACATGAGGGAAACTGTTAGAAGGATA 1941 Query 1885 GAACGAGTAACACTTTGA 1902 |||| ||||| | ||||| Sbjct 1942 GAACAAGTAAAAGTTTGA 1959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71457299620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5