BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42880.1
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347421 jgi|Araly1|347421|fgenesh1_pg.C_scaffold_5000813 2964 0.0
Ahg488975 jgi|Araly1|488975|fgenesh2_kg.6__2109__AT5G20690.1 798 0.0
> Ahg347421 jgi|Araly1|347421|fgenesh1_pg.C_scaffold_5000813
Length=1902
Score = 2964 bits (1605), Expect = 0.0
Identities = 1803/1902 (95%), Gaps = 0/1902 (0%)
Strand=Plus/Plus
Query 1 ATGACTGCTGTTCTATTTCTCTGCTTCCTTCTCATCTGTTTTTCCTTCACCCCTTCTCTA 60
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 1 ATGACTGCTGTTCTATTTCTCTGCTTCCTTCTCCTCTGTTTCTCCTTCACCCCTTCTTTG 60
Query 61 CAAAACGTTAGTGAATCGGAACCGCTCGTGCGGTTCAAGCGCTCGGTGAATATAACTAAA 120
|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAAAACGTCAGTGAATCCGAACCGCTCGTGCGGTTCAAGAGCTCGGTGAATATAACTAAA 120
Query 121 GGAGACTTGAATTCATGGAGAACAGGAACCGATCCTTGCAATGGCAAATGGTTTGGGATC 180
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GGAGATTTGAATTCATGGAGAACAGGAACCGATCCTTGCAATGGAAAATGGTTTGGGATC 180
Query 181 TATTGCCAAAAGGGTCAAACAGTTTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGG 240
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TATTGCCAAAAGGGCCAAACAGTCTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGG 240
Query 241 ACCATCAACATTGAGGATTTAAAAGATCTCCCAAATCTAAGAACGATCAGGCTTGACAAC 300
||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 241 ACCATCAACATCGAGGATTTAAAGGATCTTCCAAATCTAAGGACGATCAGGCTTGACAAC 300
Query 301 AATCTTCTCTCAGGTCCTCTCCCTCCTTTTTTCAAGCTACCTGGCTTGAAATCTCTTTTG 360
|||||||||||||| || ||||||||||||| |||||| || ||||||||||||||||||
Sbjct 301 AATCTTCTCTCAGGCCCACTCCCTCCTTTTTACAAGCTTCCAGGCTTGAAATCTCTTTTG 360
Query 361 CTCTCAAACAATAGCTTTTCTGGTGAGATTGCTGATGATTTCTTCAAAGAAACGCCACAA 420
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 361 CTCTCAAACAATAGCTTTTCCGGCGAGATTGCTGATGATTTCTTCAAGGAAACGCCACAA 420
Query 421 CTCAAGCGGGTTTTTCTTGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCTTTGATG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCAAGCGGGTTTTTCTCGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCTTTGATG 480
Query 481 CAACTCGCAGGTCTTGAGGAGCTTCACATGCAAGGAAACCAGTTCACTGGTGAGATACCT 540
|||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 481 CAACTCGCAGGTCTCGAGGAGCTTCACATGCAAGGCAACCAGTTCTCTGGTGAGATACCT 540
Query 541 CCTCTTACAGATGGCAACAAGGTTTTGAAATCCCTTGACCTCTCCAACAATGATCTAGAG 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 541 TCTCTTACAGATGGCAACAAGGTTTTGAAATCCCTCGACCTCTCCAACAATGACCTGGAG 600
Query 601 GGAGAGATCCCAATAACCATTTCCGACAGGAAGAATCTAGAGATGAAATTCGAAGGGAAT 660
|||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 601 GGAGAGATCCCAATAAGCATTTCCGAGAGGAAGAATCTAGAGATGAAATTTGAAGGAAAT 660
Query 661 CAGAGGCTTTGCGGGTCACCTCTGAATATAGAATGCGATGAGAAACCTTCATCTACAGGG 720
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CAAAAGCTTTGCGGGTCACCTCTGAATATAGTATGCGATGAGAAACCTTCATCTACAGGG 720
Query 721 TCAGGGAATGAGAAGAATAACACTGCAAAAGCTATCTTTATGGTCATCTTGTTTCTATTG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 TCAGGGAATGAGAAGAATAACACTGCAAAAGCTATCTTTATGGTCATCTTGTTTCTTTTG 780
Query 781 ATATTCTTGTTTGTGGTAGCTATTATTACAAGATGGAAGAAGAAGAGGCAACCCGAGTTC 840
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 781 ATATTCTTGTTTGTGGTAGCGATTATTACTAGATGGAAGAAGAAGAGGCAACCCGAGTTC 840
Query 841 CGGATGCTCGGTAAAGACCACCTAAGCGACCAAGAGAGCGTGGAAGTTCGTGTACCGGAC 900
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 841 CGGATGCTCGGTAAAGACCACCTAAGCGACCAAGAGAGCGTGGAAGTCCGTGTACCAGAC 900
Query 901 TCAATAAAGAAGCCTATCGACTCGAGCAAGAAGCGTAGTAACGCAGAAGGTTCCTCAAAG 960
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 901 TCGATAAAGAAGCCTATCGAGTCGAGCAAGAAGCGTAGCAACGCAGAAGGTTCCTCAAAA 960
Query 961 AAAGGTTCATCGCATAACGGAAAAGGTGCAGGAGGTGGTCCAGGAAGCGGAATGGGAGAC 1020
||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 961 AAAGGTTCATCACATAACGGAAAAGGTGGAGGTGGTGGTCCAGGAAGCGGCATGGGAGAC 1020
Query 1021 ATTATAATGGTAAACAGCGAGAAAGGCTCCTTTGGTTTACCTGATCTCATGAAGGCTGCA 1080
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 ATTATAATGGTCAACAGCGAGAAAGGCTCCTTTGGTTTACCCGATCTCATGAAGGCTGCA 1080
Query 1081 GCTGAGGTGCTAGGCAATGGTAGCCTTGGATCGGCCTACAAGGCGGTGATGGCCAACGGA 1140
|| |||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1081 GCCGAGGTGTTAGGAAATGGTAGCCTTGGATCTGCCTATAAGGCGGTGATGGCCAACGGA 1140
Query 1141 TTATCCGTGGTTGTGAAAAGGATTAGGGATATGAACAAACTTGCACGTGAAGCATTCGAT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 TTATCCGTGGTTGTGAAAAGGATTAGGGATATGAACAAACTTGCACGTGATGCATTCGAT 1200
Query 1201 ACTGAGATGCAACGGTTCGGAAAACTCCGACACCCTAACGTTCTTACCCCTTTAGCTTAT 1260
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 ACTGAGATGCAACGATTCGGGAAACTCCGACACCCTAACGTTCTTACCCCTCTAGCTTAT 1260
Query 1261 CACTATCGTCGAGAAGAGAAGCTTGTTGTCTCTGAATACATGCCTAAAAGCAGTCTACTC 1320
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CACTATCGCCGTGAAGAGAAACTTGTTGTCTCTGAATACATGCCTAAAAGCAGTCTACTC 1320
Query 1321 TACGTTTTGCACGGAGATCGTGGGGTTTATCATTCGGAGCTAACTTGGGCAACAAGATTG 1380
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1321 TACGTTTTGCACGGAGATCGTGGGGTTTATCATGCGGAGCTAACTTGGGCAACAAGGTTA 1380
Query 1381 AAGATCATACAAGGAGTGGCACGAGGAATGGACTTCTTGCATGAGGAGTTTGCGTCCTAC 1440
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1381 AAGATCATCCAAGGAGTGGCACGTGGAATGGACTTCTTGCACGAGGAGTTTGCGTCCTAC 1440
Query 1441 GATCTTCCACATGGAAATCTCAAATCTAGCAACGTTCTACTAAGTGAAACCTATGAGCCA 1500
|| || |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 1441 GAGCTCCCACATGGAAATCTCAAATCCAGCAATGTTCTATTAAGTGAAACCTATGAGCCA 1500
Query 1501 TTGATTAGCGATTACGCGTTCCTCCCGCTTCTTCAGCCTAACAACGCCTCACAAGCTTTA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1501 TTGATTAGCGATTACGCGTTCCTCCCGCTTCTTCAGCCTAACAACGCCTCACATGCTTTA 1560
Query 1561 TTCGCGTTCAAATCCCCCGAGTTTGTACAAAACCAGCAGGTTTCACCAAAATCAGACGTC 1620
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1561 TTCGCGTTCAAATCCCCTGAGTTCGTACAAAACCAGCAGATTTCACCAAAATCAGACGTC 1620
Query 1621 TATTGCCTTGGAATAATCGTTCTCGAGGTCATGACGGGGAAGTTCCCGTCTCAGTACCTA 1680
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1621 TATTGCCTTGGAATTATCGTTCTTGAGGTCATGACGGGGAAGTTCCCATCTCAATACCTA 1680
Query 1681 AATACTGGTAAAGGAGGGACGGATATAGTCGAATGGGTGCAATCTTCAATCGCACAACAT 1740
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1681 AATAATGGTAAAGGGGGGACGGATATAGTTGAATGGGTGCAATCTTCAATCGCACAACAT 1740
Query 1741 AAAGAAGAAGAGCTTATAGATCCCGAGATTGCGAGTAATACTGATTCGATAAAACAAATG 1800
|||||||||||||| |||||||| ||||| ||||||||||| ||||||| ||||||||||
Sbjct 1741 AAAGAAGAAGAGCTGATAGATCCAGAGATAGCGAGTAATACCGATTCGACAAAACAAATG 1800
Query 1801 GTTGAATTGTTGCGGATCGGGGCTGCTTGTATCGCAAGTAACCCTAACGAGAGACAAAAC 1860
|| ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 1801 GTGGAATTGTTGCGGATCGGGGCTTCTTGTATCGCAAGTAACCCTAATGAAAGACAAAAC 1860
Query 1861 ATGAAGGAGATTGTTAGAAGGATAGAACGAGTAACACTTTGA 1902
|||||||| |||||||||||||||||| |||||||||||||
Sbjct 1861 ATGAAGGAAATTGTTAGAAGGATAGAAAAAGTAACACTTTGA 1902
> Ahg488975 jgi|Araly1|488975|fgenesh2_kg.6__2109__AT5G20690.1
Length=1959
Score = 798 bits (432), Expect = 0.0
Identities = 803/978 (82%), Gaps = 42/978 (4%)
Strand=Plus/Plus
Query 949 GGTTCCTCAAAGAAAGG-TTCATCGCATAACGGAAAAGGT-G---C--AGGAGGTGGTCC 1001
|||||||| |||||||| || ||| ||| || |||||| | | |||||| | ||
Sbjct 1000 GGTTCCTCCAAGAAAGGCTT-GTCGAATATTGGTAAAGGTGGTAACGGAGGAGGAGCTCT 1058
Query 1002 AGGAAGCGGAATGGGAGACATTATAATGGT-AA-ACAGCGAGAAA-GGCTCCTTTGGTTT 1058
||| |||| ||||| |||||||||||||| || || | || ||| || |||||||||||
Sbjct 1059 AGGCGGCGGGATGGGTGACATTATAATGGTGAATAC-G-GA-AAAGGGTTCCTTTGGTTT 1115
Query 1059 ACCTGATCTCATGAAGGCTGCAGCTGAGGTGCTAGGCAATGGTAGCCTTGGATCGGCCTA 1118
||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| || ||
Sbjct 1116 ACCCGATCTGATGAAGGCTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTA 1175
Query 1119 CAAGGCGGTGATGGCCAAC-GGATTATCCGTGGTTGTGAAAAGGATTAGGGATATGAA-C 1176
||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| |
Sbjct 1176 CAAGGCGGTGATGACC-ACTGGATTATCCGTTGTGGTGAAGAGGATTAGGGATATGAATC 1234
Query 1177 AAACTTGCACGTGAAGCATTCGATACT-GAGATGCA-ACGGTTCGGAAAACTCCGA-CAC 1233
|||||||||| ||| | |||||| | |||||| | ||| ||||| ||||||| | |||
Sbjct 1235 -AACTTGCACGCGAACCTTTCGAT-GTCGAGATG-AGACGATTCGGGAAACTCC-ACCAC 1290
Query 1234 CCTAACGTTCTTACCCCTTTAGCTTATCACTATCGTCGAGAAGAGAAGCTTGTTGTCTCT 1293
|||||| |||||||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct 1291 CCTAACATTCTTACCCCTTTAGCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCC 1350
Query 1294 GAATACATGCCTAAAAGCAGTC-TACTCTACGTTTTGCACGGAGATCGTGGGGTTTATCA 1352
|||||||||||||||||||| | | || |||||||| || || ||||||||| | |||||
Sbjct 1351 GAATACATGCCTAAAAGCAG-CTTGCTTTACGTTTTACATGGTGATCGTGGGATATATCA 1409
Query 1353 TTCGGAGCTAACTTGGGCAACAAGATTGAAGATCATACAAGGAGTGGCACGA-GGAATGG 1411
||| |||||||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 1410 TTCCGAGCTAACTTGGGCAACAAGATTGAAGATCATCCAAGGAGTGGCTC-ACGGAATGA 1468
Query 1412 ACTTCTTGCATGAGGAGTTTGCGTCCTACGATCTTCCACATGGAAATCTCAAATCTAGCA 1471
| |||||||| | ||||||||||||||||||||| ||||| || || |||||||| ||||
Sbjct 1469 AGTTCTTGCACGGGGAGTTTGCGTCCTACGATCTCCCACACGGTAACCTCAAATCCAGCA 1528
Query 1472 ACGTTCTACTAAGTGAAACCTATGAGCCATTGATTAGCGATTACGCGTTCCTCCCGCTTC 1531
||||||| || || || ||||||||||| ||||| ||||||||||||||| | |||||||
Sbjct 1529 ACGTTCTCCTCAGCGAGACCTATGAGCCTTTGATCAGCGATTACGCGTTCTTACCGCTTC 1588
Query 1532 TTCAGCCTAA-CAACGCCTCACAAGCTTTATTCGCGTTCAA-ATCCCCCGAGTTTGTACA 1589
| || || || |||||| || ||||| || || || ||||| | | |||||||| | ||
Sbjct 1589 TCCAACC-AAGCAACGCATCGCAAGCATTGTTTGCTTTCAAGA-CGCCCGAGTTCGCGCA 1646
Query 1590 AA-ACCAGCAGGTTTCACCA-AAATCAGACGTCTATTGCCTTGGAATAATCGTTCTCGAG 1647
| || | ||||| || | | |||||||||||||| ||||| ||||| || |||| |||
Sbjct 1647 GACACAA-CAGGTCTCTC-ATAAATCAGACGTCTACTGCCTCGGAATTATAATTCTAGAG 1704
Query 1648 GTCATGACGGGGAAGTTCCCGTCTCAGTACCTAAATA-CTGGTAAAGGAGGGACGGATAT 1706
|| |||||||||| ||||| ||||| ||| |||| | | |||||||| ||||| |||||
Sbjct 1705 ATCTTGACGGGGAAATTCCCTTCTCAATACTTAAACAAC-GGTAAAGGCGGGACTGATAT 1763
Query 1707 AGT-CGAATGGGTGCAATCTTCAATCGCACAACATAAAGAAGAAGAGCTTATAGATCCCG 1765
||| | ||||||| |||||||| | | | || ||||||||||| ||||| ||||| |
Sbjct 1764 AGTTC-AATGGGTACAATCTTCGGTTTCGGAGCAAAAAGAAGAAGAACTTATCGATCCGG 1822
Query 1766 AGATTGCGAGTAATACTGATTCGATAAAACAAATGGTTGAATTGTTGCGGATCGGGGCTG 1825
|||| | | |||||||| || || ||| ||||| |||||||||||| | |||||||
Sbjct 1823 AGATAGTAAACAATACTGAATCAATGCGACAGATGGTGGAATTGTTGCGGGTTGGGGCTG 1882
Query 1826 CTTGTATCGCAAGTAACCCTA-ACGAGAGACAAAACATGAAGGAGATTGTTAGAAGGATA 1884
|||||||||||||||| || | | |||||| | |||||| ||| | |||||||||||||
Sbjct 1883 CTTGTATCGCAAGTAATCC-AGATGAGAGATTAGACATGAGGGAAACTGTTAGAAGGATA 1941
Query 1885 GAACGAGTAACACTTTGA 1902
|||| ||||| | |||||
Sbjct 1942 GAACAAGTAAAAGTTTGA 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71457299620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5