BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42940.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932851 jgi|Araly1|932851|scaffold_400839.1 499 8e-141
Ahg932576 jgi|Araly1|932576|scaffold_400564.1 433 8e-121
> Ahg932851 jgi|Araly1|932851|scaffold_400839.1
Length=659
Score = 499 bits (270), Expect = 8e-141
Identities = 478/576 (83%), Gaps = 23/576 (4%)
Strand=Plus/Plus
Query 14 AATCAGTCAACGCCGATGTTAGTGTAACTGCTATGTCTCTTCCTCCATCTTCAGGCTTCT 73
||||| ||||||| ||||||| ||||| | | ||| |||| ||||||||||||||||||
Sbjct 31 AATCACTCAACGCTGATGTTAACGTAACAGATTTGTTTCTTACTCCATCTTCAGGCTTCT 90
Query 74 TAAACGAGTTGTTAATCATTCGACCTAGAGAAGTCGAGAAAATTATCACAGACGAGAACG 133
||||||| | ||||||||||| |||||||||||| || |||||| |||||| ||||
Sbjct 91 TAAACGAACTAATAATCATTCGAGAGAGAGAAGTCGAGGAATTTATCATAGACGACAACG 150
Query 134 GTCATAATGTAACAAGTCTTGGATCTTACCCGGATTCTCCTCCTTCCAACCCATTTATCT 193
| ||| ||| || ||||| |||||||||||||| |||||||||||| ||||| | ||||
Sbjct 151 ATGATAGTGTCACGAGTCTCGGATCTTACCCGGACTCTCCTCCTTCCGACCCACTAATCT 210
Query 194 TTCTCAAATTCCAACACTTCGAAGCAAACTACATCTATGACCTTGTCCAT-CCGCATCTC 252
||||||||||||| |||||||| |||||||| | ||| | ||||||||| || || |||
Sbjct 211 ATCTCAAATTCCAAAACTTCGAACCAAACTACCTATATCAACTTGTCCATACC-CAACTC 269
Query 253 CACGATCATGTCTTGTCCAAACAAATATCTGATCGGATTGTTGTTAAAGCCCAACAGCTA 312
|||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| |||||
Sbjct 270 CACGATCATGTCTTGTCCAAACAAATATCTGACCAGATTGTTATTAAAGCACAAGAGCTA 329
Query 313 AGAAGTGATCGAAGTTCTGATCACTTGCC-C--------TTATTCATGGGAGTCTCCGTC 363
|||||||||| ||||||||||||||| || | |||||||||||||||||||||
Sbjct 330 AGAAGTGATCAAAGTTCTGATCACTTTCCACAACAACCCTTATTCATGGGAGTCTCCGTC 389
Query 364 ATATTTACACGCAAGGTCTACAAAGTCTTGCCTTGCAACTGTGCTCCGTCGACACCAGAC 423
| ||||||||||||||| ||||||||| || |||| |||||||||||||||||| ||||
Sbjct 390 AGATTTACACGCAAGGTATACAAAGTCGTGTCTTGTAACTGTGCTCCGTCGACAACAGAT 449
Query 424 TTGGTGGAGAAAGAGGCCGCAGAAGAAGAAACAGAGGCTTGTGCGATTTGTTTGGAAGAT 483
|||||||| ||||| ||| | | |||||||||||| | ||||| ||||||||||| |||
Sbjct 450 TTGGTGGACCAAGAGACCG-A-A-GAAGAAACAGAGACATGTGCTATTTGTTTGGAGGAT 506
Query 484 ATGTTGGAGTCGGGATTCGATGATAAACAAATCTACCGTATGCATAACTGTTGGCATATG 543
|||||||||||||||| | | || | | | || ||||||||| |||| |||| ||
Sbjct 507 ATGTTGGAGTCGGGAT-C--T-AT---CTA--CGGCCATATGCATAATTGTTCGCATCTG 557
Query 544 TTTTATGAAGGATGTGTTATGGAGTCGTTGAATCGA 579
||| || |||| ||| | | |||| | ||||||||
Sbjct 558 TTTCATCAAGGTTGTCTCAACGAGTGGCTGAATCGA 593
> Ahg932576 jgi|Araly1|932576|scaffold_400564.1
Length=637
Score = 433 bits (234), Expect = 8e-121
Identities = 373/438 (85%), Gaps = 17/438 (4%)
Strand=Plus/Plus
Query 14 AATCAGTCAACGCCGATGTTAGTGTAACTGCTATGTCTCTTCCTCCATCTTCAGGCTTCT 73
||||| |||||| |||||||| |||||| ||| ||| | || ||||||||||||||||||
Sbjct 31 AATCACTCAACGTCGATGTTAATGTAACGGCTTTGTTTTTTACTCCATCTTCAGGCTTCT 90
Query 74 TAAACGAGTTGTTAATCATTCGACCTAGAGAAGTCGAGAAAATTATCACAGACGAGAACG 133
||||||| | ||||||||||||| ||| |||||||| || || ||| |||||| ||||
Sbjct 91 TAAACGAACTAATAATCATTCGACCGAGACAAGTCGAGGAATTTCTCATAGACGACAACG 150
Query 134 GTCATAATGTAACAAGTCTTGGATCTTACCCGGATTCTCCTCCTTCCAACCCATTTATCT 193
||||| ||| || |||||||| ||||||||||| |||||||||||| ||||| | ||||
Sbjct 151 ATCATAGTGTCACGAGTCTTGGCTCTTACCCGGACTCTCCTCCTTCCGACCCACTAATCT 210
Query 194 TTCTCAAATTCCAACA-CTTCGAAGCAAACTACATCTATGACCTTGTCCAT-CCGCATCT 251
||||||||||||| | ||||||| |||||||| ||||| | ||||||||| || || ||
Sbjct 211 ATCTCAAATTCCAA-AGCTTCGAACCAAACTACCTCTATCAACTTGTCCATACC-CAACT 268
Query 252 CCACGATCATGTCTTGTCCAAACAAATATCTGATCGGATTGTTGTTAAAGCCCAACAGCT 311
||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||
Sbjct 269 CCACGATCATGTCTTGTCCAAACAAATATCTGACCAGATTGTTGTTAAAGCACAAGAGCT 328
Query 312 AAGAAGTGATCGAAGTTCTGATCACTTGCC-C--------TTATTCATGGGAGTCTCCGT 362
||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 329 AAGAAGTGATCAAAGTTCTGATCACTTGCCACAACAACCCTTATTCATGGGAGTCTCCGT 388
Query 363 CATATTTACACGCAAGGTCTACAAAGTCT-TGCCTTGCAACTGTGCTCCGTCGACACCAG 421
|| ||||||||||||||| | |||||| | || |||| || |||||||| |||||| |||
Sbjct 389 CAGATTTACACGCAAGGTATTCAAAGT-TGTGTCTTGTAATTGTGCTCCATCGACAACAG 447
Query 422 ACTTGGTGGAGAA-AGAG 438
| |||||||| || ||||
Sbjct 448 ATTTGGTGGA-AACAGAG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5