BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42950.1
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936910 jgi|Araly1|936910|scaffold_501101.1 2355 0.0
> Ahg936910 jgi|Araly1|936910|scaffold_501101.1
Length=1513
Score = 2355 bits (1275), Expect = 0.0
Identities = 1406/1470 (96%), Gaps = 6/1470 (0%)
Strand=Plus/Plus
Query 250 AGACGTTTCCTCTCTTCTCACAAATCTCTCATCACTGTTTTCTGGATCGCCACTTTCGCT 309
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 48 AGACGTTTCCTCTCTTCCCACAAATCTCTCGTCACTGTTTTCTGGATCGCCACTTTCGCT 107
Query 310 TCCTTATTCATCTGGCAATTCGGCGGCGTTTCCACAAATCTCTACTCCGGTTTCTCCCTT 369
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||
Sbjct 108 TCCTTATTCATCTGGCAATTCGGCGGCGTTTCTACAAATCTCTACACTGGTTTCTCCGTT 167
Query 370 TTCTGGTCGTCGTCTTCAACAACCACCACCGTC-TTCTCCGGTGGATTCCCCAAGCTCAG 428
|||| | ||||||||||||||| ||||||| | |||||| | |||||| ||||||||
Sbjct 168 TTCT-G--GTCGTCTTCAACAACAACCACCG-CAGCCTCCGGAGAATTCCCGAAGCTCAG 223
Query 429 ACCTGTAGTTTTCAATCTAACAGACTTCGGTGCTGTCGGCGATGGTGTCACAATCAACAC 488
|||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 224 ACCTGTAGTTTTCAATTTAACAGACTTTGGTGCCGTCGGCGATGGTGTCACAGTCAACAC 283
Query 489 TGAAGCTTTCGAGAAAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCA 548
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TGAGGCTTTCGAGAGAGCTATTTATAAGATCTCTAAGCTTGCTAAGAAAGGAGGTGGTCA 343
Query 549 ACTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGAC 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GCTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGAC 403
Query 609 TCTTTTCCTCTCTGAGAACGCTGAGATTCTTGCTCTTCAGGATGAAAAGTATTGGTCTTT 668
|||||||||| | |||||||| |||||||| |||||||||||||||||||||||| | ||
Sbjct 404 TCTTTTCCTCGCCGAGAACGCCGAGATTCTCGCTCTTCAGGATGAAAAGTATTGGCCCTT 463
Query 669 GCTTCCTCCTTTACCTTCATATGGATATGGAAGAGAGCATCATGGACCTCGTTATGGAAG 728
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 464 ACTTCCTCCTTTACCTTCATATGGTTATGGAAGAGAGCATCATGGACCTCGTTATGGAAG 523
Query 729 TTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTTACAGGGAATAATGGTAGCATCAA 788
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 524 TTTCATTCATGGACAGAATCTTAGAGATGTTGTTGTCACAGGGAATAATGGTAGCATCAA 583
Query 789 CGGGCAGGGACAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGG 848
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CGGTCAGGGGCAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGG 643
Query 849 ACCACTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGTGA 908
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 644 ACCCCTGGTGCAGATAATGTGGTCAAGTGACATTGTTTTTGCCAATATCACTTTGCGCGA 703
Query 909 TTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTCACAATCACCAATATGAC 968
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 704 TTCTCCATTTTGGACGCTTCACCCATATGACTGCAAAAATGTAACAATCACAAATATGAC 763
Query 969 CATTTTGGCGCCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCGGATTCGTGTGA 1028
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 764 CATTTTGGCACCTGTGTTCGAAGCCCCAAACACTGATGGTATCGATCCTGATTCGTGTGA 823
Query 1029 GGACATGTTAATCGAGAACTCTTACATCAGCGTTGGGGATGATGGAATCGCAATAAAGAG 1088
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 824 GGACATGTTAATCGAGAACTCTTACATTAGCGTTGGGGATGATGGAATCGCCATAAAGAG 883
Query 1089 CGGTTGGGACCAGTATGGAACTACATATGGAAAACCTTCAAAGAACATACTCATCCGCAA 1148
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 884 CGGTTGGGACCAGTATGGAACTACCTATGGACGACCTTCAAAGAACATACTCATCCGCAA 943
Query 1149 CCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CCTCATCATCCGCTCCATGGTTAGCGCTGGTATATCAATAGGAAGTGAGATGTCTGGTGG 1003
Query 1209 TGTCTCGAATATCACAGTCGAGAATATTCTGATTTGGAGCTCCCGGCGTGGAGTTAGGAT 1268
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1004 TGTCTCAAATGTCACAGTCGAGAATATTCTGATATGGAGCTCCCGGCGTGGAGTTAGGAT 1063
Query 1269 TAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTCCGGAATGTCACATT 1328
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1064 TAAAACCGCACCAGGACGAGGTGGGTATGTCCGGGATATAACATTTCGGAATGTCACATT 1123
Query 1329 GGATGAGTTGAGAGTTGGTATTGTCATTAAAACAGACTACAACGAGCACCCAGATGGTGG 1388
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1124 GGATGAATTGAGAGTTGGCATTGTCATTAAAACGGACTACAACGAGCACCCAGATGGTGG 1183
Query 1389 ATTCAATCCCCAAGCCTTTCCGATACTCGAGAACATAAACTACACTGGGATATACGGTCA 1448
||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1184 ATTCAATCCTCAAGCCTTCCCGATACTCGAGAACATAAACTACACCGGGATTTACGGTCA 1243
Query 1449 GGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCTGTTAAAAATGTAAC 1508
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1244 AGGAGTGCGTGTACCAGTGCGTATCCAAGGAAGCAAAGAGATTCCGGTTAAAAATGTAAC 1303
Query 1509 CTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTCCAGTGTGCGTA 1568
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1304 CTTCAGGGACATGTCAGTGGGGATAACATACAAGAAAAAGCACATATTTCAGTGTGCGTA 1363
Query 1569 CGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGATAACCTTGATCGGTA 1628
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1364 CGTGGAGGGGCGTGTGATAGGCACCATCTTCCCAGCTCCGTGTGAGAACCTTGATAGGTA 1423
Query 1629 TGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TGATGAGCAGGAACGGTTGGTGAAGCAATCTGATTCCCAGAATGCAACAGATATAGACTA 1483
Query 1689 CGAGATCTGACCAACAAGAGAC-TGGGTTT 1717
|||||| ||||||||||||||| |||||||
Sbjct 1484 CGAGATATGACCAACAAGAGACATGGGTTT 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5