BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42960.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484770 jgi|Araly1|484770|fgenesh2_kg.5__762__AT3G42960.1 1315 0.0
> Ahg484770 jgi|Araly1|484770|fgenesh2_kg.5__762__AT3G42960.1
Length=854
Score = 1315 bits (712), Expect = 0.0
Identities = 806/853 (94%), Gaps = 0/853 (0%)
Strand=Plus/Plus
Query 4 GATCGTCAAGAGACAGTAAACCTAAAATGGCGAACTCAGACAAAAGATTATTCGAGAAGG 63
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||||
Sbjct 1 GATCGTCAAGAGACAGTAAACCTAAAATGGCGAACTCAAACAAGAGATTATTCCAAAAGG 60
Query 64 TAGCTATAATAACCGGAGGAGCAAGAGGGATAGGAGCGGCCACGGCGAGATTGTTCACAG 123
||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
Sbjct 61 TAGCTATAATAACCGGAGGAGCAAGAGGGATCGGAGCAGCCACGGCGAGACTGTTCACGG 120
Query 124 AGAATGGCGCGTATGTGATAGTCGCGGATATCCTTGAGAATGAAGGCATCCTTGTGGCGG 183
|||| || || ||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 121 AGAACGGTGCATATGTCATAGTCGCGGATATCCTTGAGAATGAAGGCATCCATGTCGCGG 180
Query 184 AATCGATCGGTGGGTGTTACGTTCATTGTGACGTATCGAAGGAGGCTGATGTTGAGGCGG 243
|||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 181 AATCCATCGGTGGGTGTTACGTTCATTGTGATGTGTCGAAGGAGGCTGACGTTGAGGCGG 240
Query 244 CAGTGGAGCTAGCAATGAGACGTAAAGGTAGACTAGATGTGATGTTCAACAATGCCGGGA 303
||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 241 CAGTGGAGCTAGCTATGAGACGTAAAGGTAGACTAGACGTGATGTTCAACAACGCTGGGA 300
Query 304 TGTCGCTTAACGAAGGTAGTATCATGGGGATGGACGTGGACATGGTTAACAAACTTGTCT 363
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 301 TGACGCTTAACGAAGGTAGTATCATGGAGATGGACGTGGACATGGTTAACAAACTTGTTT 360
Query 364 CGGTTAATGTCAATGGTGTTTTGCATGGTATCAAACATGCCGCTAAGGCCATGATCAAAG 423
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 CGGTCAATGTCAATGGCGTTTTGCATGGCATCAAACATGCCGCTAAGGCCATGATCAAAG 420
Query 424 GGGGACGAGGAGGCTCGATAATATGCACATCGAGCTCATCAGGGCTAATGGGAGGACTTG 483
||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GGGGAGGAGGAGGATCAATAATATGCACATCGAGCTCATCAGGGGTAATGGGAGGACTTG 480
Query 484 GAGGACATGCGTATACGCTCTCCAAAGGAGCCATCAACGGGGTGGTGAGGACAACGGCGT 543
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 481 GAGGGCATGCGTATACGCTCTCCAAAGGAGCCATCAACGGGCTGGTGAGGACAACGGCAT 540
Query 544 GCGAGCTTGGGTCTCACGGCATCCGTGTGAATAGCATCTCTCCTCATGGAGTTCCCACTG 603
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 GCGAGCTTGGGTCTCACGGCATCCGTGTGAACAGCATCTCTCCTCATGGAGTTCCCACTG 600
Query 604 ACATCTTGGTTAATGCGTACCGTAAGTTCCTTAACCATGACAAACTCAACGTCGCTGAGG 663
||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||
Sbjct 601 ACATCTTGGTTAATGCGTACCGTAAGTACCTTAACAATGACAAACTCGACGTTGCTGAGG 660
Query 664 TCACCGACATTATTGCTGAGAAAGGGAGTTTGCTGACCGGAAGAGCCGGTACTGTGGAGG 723
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 TCACCGACATTGTGGCTGAGAAAGGGAGTTTGCTTACCGGAAGAGCCGGTACTGTGGAGG 720
Query 724 ACGTAGCTCAAGCAGCTTTGTTTCTTGCAAGCCAAGAATCGTCGGGGTTCATTACCGGAC 783
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 ACGTGGCTCAAGCAGCTTTGTTTCTCGCAAGCCAAGAATCGTCGGGGTTCATTACCGGAC 780
Query 784 ATAACTTGGTTGTTGATGGTGGTTACACATCTGCCACTAGTACTATGAGATTTATCTACA 843
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 ATAACCTGGTTGTTGATGGTGGTTACACATCTGCCACTAGTACCATGAGATTTATCTACA 840
Query 844 ACTAGTTTTCGTT 856
|||||||||||||
Sbjct 841 ACTAGTTTTCGTT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5