BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43110.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936924 jgi|Araly1|936924|scaffold_501115.1 830 0.0
Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1 163 2e-39
> Ahg936924 jgi|Araly1|936924|scaffold_501115.1
Length=610
Score = 830 bits (449), Expect = 0.0
Identities = 551/599 (92%), Gaps = 11/599 (2%)
Strand=Plus/Plus
Query 164 TAATAAAAACA-TTTCAGAAATGGCGACTTTGGATTCTCCGTTAGAGGTTTTGGCTTTCG 222
||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TAACAAAAACATTTTCAGAAATGGCGACTTTGGATTCTCCGTTGGAGGTTTTGGCTTTCG 60
Query 223 ACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATCGCCGTCGTGACGGCCGCCG 282
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 61 ACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATTGCCGTGGTGACGGCCGCCG 120
Query 283 TTAGTTTCTGGCGGATCCGAGCCACTACCACTACCACCACCAGCGGAGGTGGTAGAGACA 342
||||||||||||| ||||||| ||| || ||||||| | | || || |||||||||
Sbjct 121 TTAGTTTCTGGCGTATCCGAG---CTA-CA--ACCACCAGCGGGGGCGGCGGTAGAGACG 174
Query 343 ATGGCTTAATAGATGAATCTTTTCTTGAGCCACCAAAACCACAAGCGACAAAGGCTGCTC 402
| || || |||||||||||| || ||||||||| ||||||||||| || ||||||||||
Sbjct 175 ACGGTTTCATAGATGAATCTCCTCGTGAGCCACCTAAACCACAAGCCACGAAGGCTGCTC 234
Query 403 TCCTTATGGAGACGAAACCTCCTAGAGTCAAGGTAACGGAGACTGAGGATTGGAGTTTGT 462
| || ||||||||||||||| || ||| |||||||||||||| || |||||||||||||
Sbjct 235 TTGTTGTGGAGACGAAACCTCATAAAGTTAAGGTAACGGAGACGGAAGATTGGAGTTTGT 294
Query 463 TGTTGTGTAAGGACGGAGTAACGAAGGGGAAGCTAACCGTGTACTACgaa-gaaga-gat 520
|||||||||| |||||||||||||||||||||||||| ||||||||| || ||| | |||
Sbjct 295 TGTTGTGTAATGACGGAGTAACGAAGGGGAAGCTAACGGTGTACTAC-AAGGAA-ATGAT 352
Query 521 tgacggagagagagaagaagatgacggagagaCAACGGCCGTTAAGTatggaggaggtga 580
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 353 TGACGGAGAGAGAGAAGAAGATGACGGAGAGACAACGGTCGTTAAGTATGGAGGAGGTGA 412
Query 581 gagtggagaatggtgggagagatgggagagagtggtgaagatgagaaatggagatgaaGG 640
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 413 GAGTGGAGAGTGGTGGGAGAGATGGGAGACAGTGGTGAAGATGAGAAATGGAGATGAAGG 472
Query 641 TTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGC 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGC 532
Query 701 TAACCGTGTACGTAACGGTGGTTGGGTTAGTGTGCAACGTAAGGAGTGTTATGGTTGAG 759
|||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 TAACGGAGTCCGTAACGGTGGTTGGGTTAGTGTGCAGCGTAAGGAGTGTTATGGTTGAG 591
> Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1
Length=684
Score = 163 bits (88), Expect = 2e-39
Identities = 102/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 591 tggtgggagagatgggagagagtggtgaagatgagaaatggagatgaaGGTTGGTACCGT 650
|||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||| |||
Sbjct 453 TGGTGGGAGAAATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGT 512
Query 651 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 699
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 513 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5