BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G43120.1 Length=849 Score E Sequences producing significant alignments: (Bits) Value Ahg484787 jgi|Araly1|484787|fgenesh2_kg.5__779__AT3G43120.1 1227 0.0 > Ahg484787 jgi|Araly1|484787|fgenesh2_kg.5__779__AT3G43120.1 Length=801 Score = 1227 bits (664), Expect = 0.0 Identities = 732/764 (96%), Gaps = 7/764 (1%) Strand=Plus/Plus Query 36 aaaaaaaaaaaTCTTCCGGAGCTTCTAACtttttttCTGCATGGCGTTTCCTCTTCGTGT 95 ||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| Sbjct 3 AAAAAGAAAAATCTTCCGGAGCTGCTAACATTTTTT-TGCATGGCGTTTCCTCTTCGTGT 61 Query 96 CTAAGAGCGCTTCATTTCTGTTTCCTTTTCTGCTTGCCTGGGTAGATATTTTATATCCTT 155 |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| Sbjct 62 CTAAGAGCGCTTCATTTCTGTTTCCTCTTCTGCTTGCCTGGGAAGATATATTATATCCTT 121 Query 156 -AAAAGGAGAAAATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAGATTGTG 214 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 122 AAAAAGGAGAAAATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAAATTGTG 181 Query 215 AGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGAT 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 AGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGAT 241 Query 275 GGAGAGTTGGGAGCTAGAAAA-CACACAGCTATCATTTCACCGGTTATCAACAAGAGGCT 333 || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || Sbjct 242 GGCGAGTTGGGAGCTA-AAAAGCACACAGCTATCATTTCACCGGTTATCAACAAGAGACT 300 Query 334 ATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCAAAGCCCTGAGCCACC 393 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 301 ATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCATAGCCCTGAGTCACC 360 Query 394 GCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTAT 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTAT 420 Query 454 CATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTTGAGAAGGCTGAGGA 513 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 421 CATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTCGAGAAGGCTGAGGA 480 Query 514 AGAGTATGGATTTGATCACAGCGGTGCGTTAACCATTCCTTGTGAAGTTGAGACTTTCAA 573 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 481 AGAGTATGGATTTGATCACAGCGGTGCGTTAACCATACCTTGTGAAGTTGAGACTTTCAA 540 Query 574 GTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGAAGATCCAGT 633 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 541 GTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGGAGATTTAAT 600 Query 634 AGAAACGGAAGAGTAAATAATAACACAT-AC-TAATATAAACTCTTCTTTTCCTCTTTTA 691 |||||||||||| ||||||||||||||| || || |||||| |||||||||||||||||| Sbjct 601 AGAAACGGAAGATTAAATAATAACACATTACCTA-TATAAATTCTTCTTTTCCTCTTTTA 659 Query 692 TTACCATCCCCCTTTAAACTCGTATTAGGGTTGATGACACTCCCAATGGTAATTGTAAAA 751 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 660 TTACCATCCCCCTTTAAACTTGTATTAGGGCTGATGACACTCCCAATGGTAATTGTAAAA 719 Query 752 TCAGtttctctttgtatttttctgactatttttcttcctcttct 795 ||||||||||||||||||||||| | |||||||| || |||||| Sbjct 720 TCAGTTTCTCTTTGTATTTTTCTAATTATTTTTCATCTTCTTCT 763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31413283608 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5