BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43120.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484787 jgi|Araly1|484787|fgenesh2_kg.5__779__AT3G43120.1 1227 0.0
> Ahg484787 jgi|Araly1|484787|fgenesh2_kg.5__779__AT3G43120.1
Length=801
Score = 1227 bits (664), Expect = 0.0
Identities = 732/764 (96%), Gaps = 7/764 (1%)
Strand=Plus/Plus
Query 36 aaaaaaaaaaaTCTTCCGGAGCTTCTAACtttttttCTGCATGGCGTTTCCTCTTCGTGT 95
||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 3 AAAAAGAAAAATCTTCCGGAGCTGCTAACATTTTTT-TGCATGGCGTTTCCTCTTCGTGT 61
Query 96 CTAAGAGCGCTTCATTTCTGTTTCCTTTTCTGCTTGCCTGGGTAGATATTTTATATCCTT 155
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 62 CTAAGAGCGCTTCATTTCTGTTTCCTCTTCTGCTTGCCTGGGAAGATATATTATATCCTT 121
Query 156 -AAAAGGAGAAAATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAGATTGTG 214
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 122 AAAAAGGAGAAAATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAAATTGTG 181
Query 215 AGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGAT 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGAT 241
Query 275 GGAGAGTTGGGAGCTAGAAAA-CACACAGCTATCATTTCACCGGTTATCAACAAGAGGCT 333
|| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 242 GGCGAGTTGGGAGCTA-AAAAGCACACAGCTATCATTTCACCGGTTATCAACAAGAGACT 300
Query 334 ATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCAAAGCCCTGAGCCACC 393
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 301 ATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCATAGCCCTGAGTCACC 360
Query 394 GCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTAT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTAT 420
Query 454 CATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTTGAGAAGGCTGAGGA 513
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTCGAGAAGGCTGAGGA 480
Query 514 AGAGTATGGATTTGATCACAGCGGTGCGTTAACCATTCCTTGTGAAGTTGAGACTTTCAA 573
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AGAGTATGGATTTGATCACAGCGGTGCGTTAACCATACCTTGTGAAGTTGAGACTTTCAA 540
Query 574 GTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGAAGATCCAGT 633
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 541 GTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGGAGATTTAAT 600
Query 634 AGAAACGGAAGAGTAAATAATAACACAT-AC-TAATATAAACTCTTCTTTTCCTCTTTTA 691
|||||||||||| ||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct 601 AGAAACGGAAGATTAAATAATAACACATTACCTA-TATAAATTCTTCTTTTCCTCTTTTA 659
Query 692 TTACCATCCCCCTTTAAACTCGTATTAGGGTTGATGACACTCCCAATGGTAATTGTAAAA 751
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TTACCATCCCCCTTTAAACTTGTATTAGGGCTGATGACACTCCCAATGGTAATTGTAAAA 719
Query 752 TCAGtttctctttgtatttttctgactatttttcttcctcttct 795
||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 720 TCAGTTTCTCTTTGTATTTTTCTAATTATTTTTCATCTTCTTCT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5