BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G43180.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323077 jgi|Araly1|323077|fgenesh1_pm.C_scaffold_5000621           342    1e-93
  Ahg936973 jgi|Araly1|936973|scaffold_501164.1                        145    4e-34
  Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091                    145    4e-34


> Ahg323077 jgi|Araly1|323077|fgenesh1_pm.C_scaffold_5000621
Length=582

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 297/345 (86%), Gaps = 31/345 (9%)
 Strand=Plus/Plus

Query  256  TGCGTTAAACAACATATAGAATCGAGGCTACTCGAGGGATGTGTACCGAGATGTCCTCAT  315
            ||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct  187  TGCGTGAAACGACATATAGAAGCGAGGCTACTCGAGGGACGTGTACCGAGATGTCCTGAT  246

Query  316  GATCAATGCGAGTATAAGCTAACATTTAGAAGCTGTGCTAATCTTTTGACACCTAAAACT  375
             |||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct  247  TATCAATGCGAGTCTAAGCTAACTTTTAGAAGTTGTGCTAATCTTTTGACACCT-AAACT  305

Query  376  AAAAGCGAT-AGCT---C--T-A------T-----A--TATC--T-TCTACTCAAGACA-  411
            |||||||||  |||   |  | |      |     |  | ||  | ||||||||||| | 
Sbjct  306  AAAAGCGATGTGCTCGGCTTTAATGTCGGTAACAGAGCTCTCTATATCTACTCAAGA-AG  364

Query  412  CTCAAGTTAGGAGATGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTC  471
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  365  CTGAAGTTAGGAGATGTTGTGTCAAATGCAGTGAACCCTTTTGCATCAACTGCAAAGTTC  424

Query  472  CATGGCATAGTGACTTGTCATGCGGTGATTACAAGAG---G--TGTGGCTATTCGTTTTG  526
            |||||||||||||||||||||||||||||||||||||   |  ||||| |||||||||||
Sbjct  425  CATGGCATAGTGACTTGTCATGCGGTGATTACAAGAGATTGGGTGTGGATATTCGTTTTG  484

Query  527  CTACACATGTGGTGCCGAATGGAAGCAAGGAGGTTGCACTCACCG  571
             |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  485  TTACACATGTGGTACCGAATGGAAGCGAGGAGGTTGCACTCACCG  529


> Ahg936973 jgi|Araly1|936973|scaffold_501164.1
Length=506

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 86/90 (96%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  419  TAGGAGATGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCATGGCA  478
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  72   TAGGAGTTGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCA  131

Query  479  TAGTGACTTGTCATGCGGTGATTACAAGAG  508
            |||| |||||||||||| ||||||||||||
Sbjct  132  TAGTAACTTGTCATGCGATGATTACAAGAG  161


> Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091
Length=798

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 86/90 (96%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  419  TAGGAGATGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCATGGCA  478
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  516  TAGGAGTTGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCA  575

Query  479  TAGTGACTTGTCATGCGGTGATTACAAGAG  508
            |||| |||||||||||| ||||||||||||
Sbjct  576  TAGTAACTTGTCATGCGATGATTACAAGAG  605



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5