BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43190.1
Length=2764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484788 jgi|Araly1|484788|fgenesh2_kg.5__780__AT3G43190.1 3884 0.0
Ahg941635 jgi|Araly1|941635|scaffold_602179.1 2392 0.0
> Ahg484788 jgi|Araly1|484788|fgenesh2_kg.5__780__AT3G43190.1
Length=2725
Score = 3884 bits (2103), Expect = 0.0
Identities = 2415/2568 (94%), Gaps = 12/2568 (0%)
Strand=Plus/Plus
Query 66 TTCATTCACTAC--A-TATTTCTAGTGACCTCCTTCGCCAGTGACTTTCCGTAGCAATTT 122
|||||||||| | | |||||| |||||||||||| |||||| ||||| ||||||| |||
Sbjct 33 TTCATTCACTTCTAATTATTTCCAGTGACCTCCTTGGCCAGTAACTTTTCGTAGCATTTT 92
Query 123 AAGTTTCAAAAGCTTTGTGATTGTGTTTGAAATGGCAAACGCAGAACGTGTAATAACGCG 182
||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 93 CAGTTTCAAAAGCTTTTTGATTTTGTTTGAAATGGCAAACGCGGAACGTGTAATAACGCG 152
Query 183 AGTCCACAGCCAGCGAGAGCGTTTGGATGCAACTCTTGTTGCTCAGAAAAATGAAGTATT 242
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct 153 CGTCCACAGCCAGCGAGAGCGTTTGGATGCTACTCTTATTGCTCAGAAAAATGAAGTCCT 212
Query 243 TGCTTTGCTCTCAAGGGTTGAAGCCAAAGGCAAAGGCATTCTACAACACCACCAGATCAT 302
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 213 TGCTTTGCTCTCAAGGGTTGAAGCCAAAGGCAAAGGCATTCTACAATATCACCAGATCAT 272
Query 303 TGCTGAATTTGAGGCAATGCCTTTAGAGACACAGAAGAAGCTTAAAGGTGGAGCTTTCTT 362
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 273 TGCTGAGTTTGAGGCAATGCCTTTAGAGACACAAAAGAAGCTTCAAGGTGGAGCTTTCTT 332
Query 363 CGAATTTCTCCGATCAGCTCAAGAGGCAATTGTGTTACCACCATTTGTTGCTTTAGCTGT 422
|||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 333 CGAAATCCTCCGTTCAGCTCAAGAAGCAATTGTGTTACCACCATTTGTTGCTTTAGCTGT 392
Query 423 GAGACCAAGACCTGGAGTTTGGGAATACGTAAGAGTTAACCTCCATGATCTTGTCGTTGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GAGACCAAGACCTGGAGTTTGGGAATACGTAAGAGTTAACCTCCATGATCTTGTCGTTGA 452
Query 483 GGAGCTTCAAGCTTCTGAATATCTTCAATTCAAGGAAGAGCTCGTCGATGGAATTAAGAA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 453 CGAGCTTCAAGCTTCTGAATATCTTCAATTCAAGGAAGAGCTCGTCGATGGAATTAGGAA 512
Query 543 TGGAAACTTCACTCTTGAACTTGACTTTGAACCATTCAACGCGGCATTCCCTCGTCCTAC 602
||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 513 TGGTAACTTCACTCTCGAGCTTGACTTTGAACCATTCAACGCCGCATTCCCTCGTCCCAC 572
Query 603 GCTCAACAAGTACATTGGAGATGGCGTTGAGTTCCTCAACCGCCATCTCTCGGCTAAGCT 662
||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 573 GCTCAACAAGTACATTGGAAATGGGGTTGAGTTCCTCAATCGCCATCTCTCGGCTAAGCT 632
Query 663 CTTCCATGACAAGGAGAGCTTGCATCCGCTGCTCAAGTTCCTCCGCCTCCATTCCCACGA 722
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 633 CTTCCATGACAAGGAGAGCTTGCATCCTCTGCTCAAGTTCCTGCGCCTCCATTCCCACGA 692
Query 723 GGGAAAGACTCTGATGCTTAACAATAGGATCCAGAACCTAAACACCCTACAACACAATCT 782
||| |||||||||||||||||| | |||||||||||||||||||| || |||||||||||
Sbjct 693 GGGCAAGACTCTGATGCTTAACGACAGGATCCAGAACCTAAACACACTGCAACACAATCT 752
Query 783 GAGAAAAGCAGAGGAATATCTAATGGAGCTGAAGCCTGAGACACTCTACTCAGAGTTTGA 842
||| ||||||||||| ||||| ||||||||||| || ||||||| |||||| ||||||||
Sbjct 753 GAGGAAAGCAGAGGAGTATCTTATGGAGCTGAAACCCGAGACACCCTACTCGGAGTTTGA 812
Query 843 GCACAAGTTCCAGGAGATTGGTCTTGAGAGAGGCTGGGGAGACACCGCGGAGCGTGTTCT 902
||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 813 CCACAAGTTCCAGGGGATTGGTCTTGAGAGAGGTTGGGGAGACACCGCGGTGCGTGTACT 872
Query 903 TAACATGATCCGTCTTCTTCTTGACCTTCTCGAGGCACCTGACCCTTGT-ACTCTTGAGA 961
| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 873 TGACATGATTCGTCTTCTTCTTGACCTTCTCGAGGCACCTGACCCTT-TCACTCTTGGGA 931
Query 962 ATTTCCTTGGAAGAATCCCAATGGTTTTCAACGTTGTGATCCTCTCTCCTCATGGATACT 1021
||||||||||||| || |||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 932 ATTTCCTTGGAAGGATACCAATGGTTTTCAACGTTGTGATCTTATCTCCACATGGATACT 991
Query 1022 TTGCTCAGGACAATGTTCTTGGTTACCCTGACACAGGTGGTCAGGTTGTTTACATTCTTG 1081
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 992 TTGCTCAGGATAATGTTCTTGGTTACCCTGACACTGGTGGTCAGGTTGTTTACATTCTTG 1051
Query 1082 ATCAAGTTCGTGCTCTCGAAACAGAGATGCTCCAACGCATCAAACAACAAGGACTCAACA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1052 ATCAAGTTCGTGCTCTCGAAACAGAGATGCTCCAACGCATCAAACAACAAGGACTCACCA 1111
Query 1142 TCACTCCGAGAATCCTAATCATCACTCGGCTGCTTCCTGACGCAGCAGGAACCACTTGTG 1201
||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 1112 TCACTCCGAGAATCCTAATTATCACTCGGTTGCTTCCTGATGCAGCAGGAACCACTTGTG 1171
Query 1202 GTCAACGTCTAGAGAAAGTGTACGGATCTCAGTATTGTGATATCCTCCGTGTGCCTTTTA 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1172 GTCAACGTCTAGAGAAAGTGTACGGATCTCAGTATTGTGATATCCTCCGTGTACCTTTTA 1231
Query 1262 GAACAGAGAAAGGAATCGTTCGCAAATGGATATCAAGGTTTGAGGTCTGGCCGTATCTAG 1321
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1232 GAACAGAGAAAGGAATCGTTCGCAAATGGATCTCAAGGTTTGAGGTCTGGCCGTATCTAG 1291
Query 1322 AGACTTTTACCGAGGATGTTGCCGCTGAAATCTCGAAAGAGTTGCAGGGGAAGCCTGAC- 1380
|||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||
Sbjct 1292 AGACTTTTACCGAGGATGTTGCAGCTGAAATCTCGAATGAGTTACAAGGGAAACCTGACC 1351
Query 1381 TTGATCATTGGAAACTACAGTGATGGTAATCTTGTTGCATCCTTGTTAGCACACAAACTT 1440
|| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1352 TT-ATCATTGGAAACTATAGTGATGGTAATCTTGTTGCCTCTTTGTTAGCACACAAACTT 1410
Query 1441 GGTGTCACTCAGTGCACCATCGCTCATGCTTTGGAGAAGACTAAGTACCCGGATTCTGAT 1500
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GGTGTCACTCAGTGTACCATTGCTCATGCTTTGGAGAAGACTAAGTACCCGGATTCTGAT 1470
Query 1501 ATCTACTGGAAGAAGCTCGACGAGAAGTATCACTTTTCTTGCCAGTTCACGGCTGATCTT 1560
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1471 ATCTACTGGAAGAAGCTTGACGAGAAGTATCACTTCTCTTGCCAGTTCACTGCTGATCTT 1530
Query 1561 ATCGCCATGAACCACACAGATTTCATCATCACAAGTACTTTCCAAGAAATTGCTGGAAGC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 ATCGCCATGAACCACACAGATTTCATCATCACAAGTACTTTCCAAGAAATTGCTGGAAGC 1590
Query 1621 AAGGACACTGTTGGTCAATATGAGAGCCACAGATCTTTCACACTTCCCGGGTTGTACCGT 1680
||||||||||||||||| || ||||| |||| | ||||||||||||||||| | || |||
Sbjct 1591 AAGGACACTGTTGGTCAGTACGAGAGTCACACAGCTTTCACACTTCCCGGGCTATATCGT 1650
Query 1681 GTAGTTCACGGTATTGATGTGTTTGATCCAAAGTTCAACATTGTCTCTCCTGGAGCAGAT 1740
|| |||||||| || |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1651 GTGGTTCACGGGATCGATGTGTTTGATCCCAAGTTCAACATTGTCTCTCCTGGTGCGGAT 1710
Query 1741 ATGAGCATCTACTTCGCTTACACCGAGGAGAAGCGTAGATTAACTGCATTCCATCTAGAG 1800
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1711 ATGAGCATATACTTCGCCTACACTGAGGAGAAGCGTAGATTAACTGCATTCCATCAAGAG 1770
Query 1801 ATCGAGGAGCTCCTCTATAGTGATGTTGAAAACGAAGAGCACTTATGTGTGCTTAAGGAC 1860
|| |||||||||||||| ||||||||||| |||||| ||||| |||||||||| ||||||
Sbjct 1771 ATTGAGGAGCTCCTCTACAGTGATGTTGAGAACGAAAAGCACCTATGTGTGCTAAAGGAC 1830
Query 1861 AAGAAGAAGCCAATAATTTTCACCATGGCTAGGCTTGACCGTGTAAAGAACTTATCAGGT 1920
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 AAGAAGAAGCCAATCCTCTTCACCATGGCTAGGCTTGACCGTGTAAAGAACTTATCAGGT 1890
Query 1921 CTTGTTGAGTGGTACGGTAAGAACACTCGCTTGCGCGAACTGGTGAACTTGGTGGTTGTG 1980
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1891 CTTGTTGAGTGGTATGGTAAGAACACTCGCCTGCGCGAACTGGTGAACTTGGTCGTTGTG 1950
Query 1981 GGTGGAGACAGGAGGAAAGAGTCACAGGACAACGAAGAGAAGGCCGAGATGAAGAAAATG 2040
|||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 1951 GGTGGAGACAGGAGCAAAGAGTCGCAGGACAATGAAGAAAAGGCTGAGATGAAGAAAATG 2010
Query 2041 TATGAACTGATAGAGGAATACAAACTCAACGGGCAATTCCGATGGATCTCTTCACAGATG 2100
||||| ||||| |||||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct 2011 TATGATCTGATTGAGGAATACAAACTTAACGGGCAGTTTCGATGGATCTCCTCACAGATG 2070
Query 2101 AACAGAGTGAGAAACGGTGAGCTTTACCGTTACATATGTGACACTAAAGGTGCATTTGTG 2160
||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2071 AACCGAGTGAGAAACGGCGAGCTTTACCGTTACATATGTGACACCAAAGGTGCATTTGTA 2130
Query 2161 CAGCCTGCTCTTTATGAAGCCTTTGGGTTGACTGTTGTTGAGGCTATGACCTGTGGGTTA 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 CAGCCTGCTCTTTATGAAGCCTTTGGGTTGACTGTTGTTGAGGCTATGACCTGTGGGTTA 2190
Query 2221 CCGACTTTCGCTACTTGTAATGGCGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGT 2280
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2191 CCGACTTTCGCTACTTGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGT 2250
Query 2281 TTCCACATTGATCCATATCATGGTGACAAGGCAGCTGAGA-GTCTTGCTGATTTCTTCAC 2339
||||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||||
Sbjct 2251 TTCCACATTGATCCATACCATGGTGACCAGGCAGCTGAGACG-CTTGCTGATTTCTTCAC 2309
Query 2340 CAAGTGTAAGCATGACCCATCTCACTGGGATCAGATCTCATTGGGAGGACTTGAGAGGAT 2399
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2310 CAAGTGTAAGCATGACCCATCTCATTGGGATCAGATTTCATTGGGAGGACTTGAGAGGAT 2369
Query 2400 CCAGGAGAAATATACTTGGCAAATATACTCACAGAGGCTCTTGACATTGACTGGTGTCTA 2459
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 2370 CCAGGAGAAATATACATGGCAAATTTACTCAGAGAGGCTCTTGACATTGACTGGTGTCTA 2429
Query 2460 CGGCTTTTGGAAACATGTCTCGAACCTTGACCGTCTTGAGAGTCGTCGATACCTTGAGAT 2519
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2430 CGGCTTCTGGAAACATGTCTCGAACCTTGACCGTCTTGAGAGTCGTCGATACCTTGAGAT 2489
Query 2520 GTTCTACGCACTGAAGTACCGCCCACTGGCTCAAGCTGTTCCTCTTGCTCATGAAGAGTG 2579
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2490 GTTCTACGCATTGAAGTACCGCCCACTGGCTCAAGCTGTTCCTCTTGCTCAGGAAGAGTG 2549
Query 2580 AAAGAAGAAGATTTTCTACATTCTACAACAATAAAGATCTCTCTTTGT 2627
|||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 2550 AAAGAAGA---TTTTCTACCTTCTACAACAATAAAGATCTCTCATTGT 2594
> Ahg941635 jgi|Araly1|941635|scaffold_602179.1
Length=2470
Score = 2392 bits (1295), Expect = 0.0
Identities = 2081/2461 (85%), Gaps = 51/2461 (2%)
Strand=Plus/Plus
Query 153 AATGGCAAACGCAGAACGTGTAATAACGCGAGTCCACAGCCAGCGAGAGCGTTTGGATGC 212
|||||||||||| |||||| | |||||||| ||||||||||| || ||||||||| | |
Sbjct 23 AATGGCAAACGCTGAACGTATGATAACGCGCGTCCACAGCCAACGTGAGCGTTTGAACGA 82
Query 213 AACTCTTGTTGCTCAGAAAAATGAAGTATTTGCTTTGCTCTCAAGGGTTGAAGCCAAAGG 272
||| |||||| || ||| ||| ||||| |||| ||||| || ||| |||||||||||||
Sbjct 83 AACGCTTGTTTCTGAGAGAAACGAAGTCCTTGCCTTGCTTTCCAGGATTGAAGCCAAAGG 142
Query 273 CAAAGGCATTCTACAACACCACCAGATCATTGCTGAATTTGAGGCAATGCCTTTAGAGAC 332
||||| ||| ||||||| |||| |||||||||||||| || || ||||| ||| ||
Sbjct 143 TAAAGGTATTTTACAACAAAACCAAATCATTGCTGAATTCGAAGCTTTGCCTGGAGAAAC 202
Query 333 ACAGAAGAAGCTTAAAGGTGGAGCTTTCTTCGAATTTCTCCGAT-CAGCTCAAGAGGCAA 391
|||||||| ||| ||||||| |||||||||| ||||| || || |||| || ||||
Sbjct 203 CCAGAAGAAACTTGAAGGTGGTCCTTTCTTCGACCTTCTCAAATCCA-CTCAGGAAGCAA 261
Query 392 TTGTGTTACCACCATTTGTTGCT-TTAGCTGTGAGACCAAGACCTGGAGTTTGGGAATAC 450
||||||| ||||||| |||||| || |||||||||||||||||||| ||||||||||||
Sbjct 262 TTGTGTTGCCACCATGGGTTGCTCTT-GCTGTGAGACCAAGACCTGGTGTTTGGGAATAC 320
Query 451 GTAAGAGTTAACCTCCATGATCTTGTCGTTGAGGAGCTTCAAGCTTCTGAATATCTTCAA 510
||||||| || ||||||| |||||| ||||| || || ||| || |||| | ||||||
Sbjct 321 ATAAGAGTCAATCTCCATGCTCTTGTGGTTGAAGAACTCCAACCTGCTGAGTTTCTTCAT 380
Query 511 TTCAAGGAAGAGCTCGTCGATGGAATTAAGAATGGAAACTTCACTCTTGAACTTGACTTT 570
||||||||||| ||||| |||||| |||||||||| | ||||||||||| ||||| |||
Sbjct 381 TTCAAGGAAGAACTCGTTGATGGAGTTAAGAATGGTGATTTCACTCTTGAGCTTGA-TTT 439
Query 571 -GAACCATTCAACGCGGCATTCCCTCGTCCTACGCTCAACAAGTACATTGGAGATGGCGT 629
||||||||||| ||| | ||||||||||| || |||||||| ||||||||| |||| ||
Sbjct 440 CGAACCATTCAATGCGTCTTTCCCTCGTCCAACACTCAACAAATACATTGGAAATGGTGT 499
Query 630 TGAGTTCCTCAACCGCCATC-TCTCGGCTAAGCTCTTCCATGACAAGGAGAGCTTGCATC 688
||||||||| ||||| || | | || ||||||||||| |||||||||||||| |||| ||
Sbjct 500 TGAGTTCCTTAACCGTCA-CTTATCAGCTAAGCTCTTTCATGACAAGGAGAGTTTGCTTC 558
Query 689 CGCTGCTCAAGTTCCTCCGCCTCCATTCCCACGAGGGAAAG-ACTCTGATGCTT-AACAA 746
| |||| |||||||| || | || |||| |||| ||| || |||||| || | |
Sbjct 559 CATTGCTTAAGTTCCTTCGTCGACACAGCCACCAGGGCAAGAAC-CTGATG-TTGAGTGA 616
Query 747 TAGGATCCAGAACCTAAACACCCTACAACACAATC-TGA-GAAAAGCAGAGGAATATCTA 804
| || || ||||| ||||| || |||||| | | ||| | ||||||||||| |||||
Sbjct 617 GAAAATTCAAAACCTCAACACTCTGCAACAC-ACCTTGATG-AAAGCAGAGGAGTATCT- 673
Query 805 ATG--GAGCTGAAGCCTGAGACACTC-TACT-CAGAGTTTGA-GCACAAGTTCCAGGAGA 859
|| ||||| |||||||| |||| | || | ||||||||| || |||||| ||||||
Sbjct 674 -TGCAGAGCTTAAGCCTGAAACAC-CGTA-TGAAGAGTTTGAGGC-CAAGTTTGAGGAGA 729
Query 860 TTGGTCTTGAGAGAGGCTGGGGAGACACCGCGGAGCGTGTTCTTAACATGATCCGTCTTC 919
||||||||||||| || |||||||||| || |||||||| ||| |||||||||||||||
Sbjct 730 TTGGTCTTGAGAGGGGATGGGGAGACAATGCTGAGCGTGTCCTTGACATGATCCGTCTTC 789
Query 920 TTCTT-GACCTTCTCGAGGCACCTGACCCTTGTACTCTTGAGAATTTCCTTGGAAGAATC 978
|| || |||||||| ||||| ||||| ||||| |||||||||| ||| ||||||||| |
Sbjct 790 TT-TTGGACCTTCTTGAGGCGCCTGATCCTTGCACTCTTGAGACTTTTCTTGGAAGAGTA 848
Query 979 CCAATGGTTTTCAACGTTGTGATCCTCTCTCCTCATGGATACTTTGCTCAGGACAATGTT 1038
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 849 CCAATGGTGTTCAACGTTGTGATCCTCTCTCCACATGGTTACTTTGCTCAGGACAATGTT 908
Query 1039 CTTGGTTACCCTGACACAGGTGGTCAGGTTGTTTACATTCTTGATCAAGTTCGTGCTCTC 1098
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 909 CTTGGTTACCCTGACACTGGTGGCCAGGTTGTGTACATTCTTGATCAAGTTCGTGCTCTG 968
Query 1099 GAAACAGAGATGCTCCAACGCATCAAACAACAAGGACTCAACATCACTCCGAGAATCCT- 1157
|||||||||||||| || || || || ||||||||||||||||| | || ||||| ||
Sbjct 969 GAAACAGAGATGCTTCAGCGTATTAAGCAACAAGGACTCAACATTAAACCAAGAATTCTC 1028
Query 1158 AATCATCACTCGGCTGCTTCCTGACGCAGCAGGAACCACTTGTGGTCAACGTCTAGAGAA 1217
| || ||||||| || || ||||| || | ||||||||| |||||| ||||||| ||||
Sbjct 1029 ATTC-TCACTCGACTCCTCCCTGATGCGGTAGGAACCACATGTGGTGAACGTCTCGAGAG 1087
Query 1218 AGTGTACGGA-TCTCAGTATTGTGATATCCTCCGTGTGCCTTTTAGAACAGAGAAA-GGA 1275
||| || || ||| |||| |||||||| ||||||||||| || ||||||| ||| ||
Sbjct 1088 AGTTTA-TGATTCTGAGTACTGTGATATTCTCCGTGTGCCCTTCCGAACAGA-AAAGGGT 1145
Query 1276 ATCGTTCGCAAATGGATATCAAGGTTTGAGGTCTGGCCGTATCTAGAGACTTTTACCGAG 1335
|| |||||||||||||| ||||| ||||| || ||||| ||||||||||||| ||||||
Sbjct 1146 ATAGTTCGCAAATGGATCTCAAGATTTGAAGTTTGGCCATATCTAGAGACTTACACCGAG 1205
Query 1336 GATGTTGCCGCTGAAATCTCGAAAGAGTTGCAGGGGAAGCCTGA-CTTGATCATTGGAAA 1394
|||| ||| | ||| | |||||||| ||| | || |||||||| ||| |||||||| ||
Sbjct 1206 GATGCTGCGGTTGAGCTATCGAAAGAATTGAATGGAAAGCCTGACCTT-ATCATTGGTAA 1264
Query 1395 CTACAGTGATGGTAATCTTGTTGCATCCTTGTTAGCACACAAACTTGGTGTCACTCAGTG 1454
|||||||||||| ||||||||||| || || ||||| |||||||||||||||||||||||
Sbjct 1265 CTACAGTGATGGAAATCTTGTTGCCTCTTTATTAGCTCACAAACTTGGTGTCACTCAGTG 1324
Query 1455 CACCATCGCTCATGCTTTGGAGAAGACTAAGTACCCGGATTCTGATATCTACTGGAAGAA 1514
||||| ||||||||| |||||||||| |||||||||||||| || |||||||||| |||
Sbjct 1325 TACCATTGCTCATGCTCTGGAGAAGACAAAGTACCCGGATTCCGACATCTACTGGAGGAA 1384
Query 1515 GCTCGACGAGAAGTATCACTTT-TCTTGCCAGTTCACGGCTGATCTTATCGCCATGAACC 1573
||| ||||||||||| || ||| || ||||||||||| || ||| || |||| |||||||
Sbjct 1385 GCTTGACGAGAAGTACCA-TTTCTCATGCCAGTTCACTGCGGATATTTTCGCAATGAACC 1443
Query 1574 ACACAGATTTCATCATCACAAGTACTTTCCAAGAAATTGCTGGAAGCAAGGACACTGTTG 1633
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ACACTGATTTCATCATCACCAGTACTTTCCAAGAAATTGCTGGAAGCAAGGACACTGTTG 1503
Query 1634 GTCAATATGAGAGCCACA-GATCTTTCACACTTCCCGGGTTGTACCGTGTAGTTCACGGT 1692
| || ||||| ||||||| | |||| || |||||||| |||||||| || ||||||||
Sbjct 1504 GGCAGTATGAAAGCCACACGGCCTTT-ACTCTTCCCGGATTGTACCGAGTTGTTCACGGG 1562
Query 1693 ATTGATGTGTTTGATCCAAAGTTCAACATTGTCTCTCCTGGAGCAGATATGAGCATCTAC 1752
|| |||||||||||||| ||||||||||||||||| ||||| || ||||||| |||||||
Sbjct 1563 ATCGATGTGTTTGATCCCAAGTTCAACATTGTCTCCCCTGGTGCTGATATGAACATCTAC 1622
Query 1753 TTCGCTTACACCGAGGAGAAGCGTAGATTAACTGCATTCCA-TCTAGAGATCGAGGAGCT 1811
||| ||||||| ||||||||||||||||| ||| |||||| ||| ||||||||||||||
Sbjct 1623 TTCCCTTACACAGAGGAGAAGCGTAGATTGACTAAATTCCACTCT-GAGATCGAGGAGCT 1681
Query 1812 CCTCTATAGTGATGTTGAAAACGAAGAGCACTTATGTGTGCTTAAGGACAAGAAGAAGCC 1871
|||||| || ||||| || |||||||||||| | ||||| || |||||||||||||||||
Sbjct 1682 CCTCTACAGCGATGTCGAGAACGAAGAGCACCTGTGTGTCCTCAAGGACAAGAAGAAGCC 1741
Query 1872 AATAATTTTCACCATGGCTAGGCTTGACCGTGTAAAGAACTTATCAGGTCTTGTTGAGTG 1931
|| | ||||| ||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1742 GATCCTCTTCACAATGGCTAGGCTCGACCGTGTCAAGAACTTGTCAGGTCTTGTTGAGTG 1801
Query 1932 GTACGGTAAGAACACTCGCTTGCGCGAACTGG-TGAACTTGGTGGTTGTGGGTGGAGACA 1990
|||||| |||||||| ||| |||| || |||| | ||||||||||||||||| |||||||
Sbjct 1802 GTACGGGAAGAACACCCGCCTGCGTGAGCTGGCT-AACTTGGTGGTTGTGGGAGGAGACA 1860
Query 1991 GGAGGAAAGAGTCACAGGACAACGAAGAGAAGGCCGAGATGAAGAAAATGTATGAACTGA 2050
|||||||||| ||| ||||||| |||||||| || |||||||||||||||||||| || |
Sbjct 1861 GGAGGAAAGAATCAAAGGACAATGAAGAGAAAGCAGAGATGAAGAAAATGTATGATCTCA 1920
Query 2051 TAGAGGAATACAAACTCAACGGGCAATTCCGATGGATCTCTTCACAGATGAACAGAGTGA 2110
| || |||||||| |||||||| || ||| | |||||||| || ||||||||| | || |
Sbjct 1921 TTGAAGAATACAAGCTCAACGGTCAGTTCAGGTGGATCTCCTCTCAGATGAACCGGGTTA 1980
Query 2111 GAAACGGTGAGCTTTACCGTTACATATGTGACACTAAAGGTGCATTTGTGCAGCCTGCTC 2170
| ||||||||||| ||| | ||||| |||||||| || |||||||||||||| |||||
Sbjct 1981 GGAACGGTGAGCTGTACAGGTACATCTGTGACACCAAGGGTGCATTTGTGCAACCTGCA- 2039
Query 2171 TT-TATGAAGCCTTTGGGTTGACTGTTGTTGAGGCTATGACCTGTGGGTTACCGACTTTC 2229
|| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 2040 TTGTATGAAGCCTTTGGGTTGACTGTTGTGGAGGCCATGACTTGTGGATTACCGACTTTC 2099
Query 2230 GCTACTTGTAATGGCGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTTCCACATT 2289
|| ||||| || || ||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 2100 GCCACTTGCAAAGGTGGTCCAGCTGAGATCATTGTGCACGGTAAATCGGGTTTCCACATT 2159
Query 2290 GATCCATATCATGGTGA-CAAGGCAGCTGAGAGTCTTGCTGATTTCTTCACCAAGTGTAA 2348
|| || || |||||| | || ||| ||||| | |||||||||||||||||||||||||||
Sbjct 2160 GACCCTTACCATGGTAATCA-GGCTGCTGATACTCTTGCTGATTTCTTCACCAAGTGTAA 2218
Query 2349 GCATGACCCATCTCACTGGGATCAGATCTCATTGGGAGGACTTGAGAGGATCCAGGAGAA 2408
| | || ||||||||||||||| |||||||| ||||| ||| ||||||| |||||||
Sbjct 2219 GGAGGATCCATCTCACTGGGATGAGATCTCAAAAGGAGGGCTTCAGAGGATTGAGGAGAA 2278
Query 2409 ATATACTTGGCAAATATACTCACAGAGGCTCTTGACATTGACTGGTGTCTACGGCTTTTG 2468
||| ||||||||||| ||||||||||||||| ||||| |||||||||| || || || ||
Sbjct 2279 ATACACTTGGCAAATCTACTCACAGAGGCTCCTGACACTGACTGGTGTGTATGGATTCTG 2338
Query 2469 GAAACATGTCTCGAACCTTGACCGTCTTGAGAGTC-GTCGATACCTTGAGATGTTCTACG 2527
||| ||||||||||||||||||| ||||||| | | | || |||||||| |||||||| |
Sbjct 2339 GAAGCATGTCTCGAACCTTGACCATCTTGAG-GCCCGCCGTTACCTTGAAATGTTCTATG 2397
Query 2528 CACTGAAGTACCGCCCACTGGCTCAAGCTGTTCCTCTTGCTCATGAAGAGTGAA-AGAAG 2586
|| ||||||| |||||| ||||||| ||||||||||||||||| || || |||| |||||
Sbjct 2398 CATTGAAGTATCGCCCATTGGCTCAGGCTGTTCCTCTTGCTCAAGATGATTGAAGAGAAG 2457
Query 2587 A 2587
|
Sbjct 2458 A 2458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104291090810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5