BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43220.1
Length=3126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484790 jgi|Araly1|484790|fgenesh2_kg.5__782__AT3G43220.1 4093 0.0
Ahg488990 jgi|Araly1|488990|fgenesh2_kg.6__2124__AT5G20840.1 1912 0.0
> Ahg484790 jgi|Araly1|484790|fgenesh2_kg.5__782__AT3G43220.1
Length=2981
Score = 4093 bits (2216), Expect = 0.0
Identities = 2748/2989 (92%), Gaps = 99/2989 (3%)
Strand=Plus/Plus
Query 124 tttttGTGAAATCCG-AGCTTCGtttttttGATCATTTTGTTTACACTTCCAGAGTGATA 182
|||||||| ||| || ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 32 TTTTTGTG-AATTCGAAGCTTCG---TTTTGATCA-TTTGTTTACACTTCCAGAGTGATG 86
Query 183 ACGATTCTCTGATCTGTTTCCATGATCGCTCTTCTCTAACTCTCTA-TTCGATCTTCGAC 241
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 87 ACGATTCTGTGATCTGTTTCCATGATCGCTCTTCTCTAGCTCTCTATTTCGATCTTCGAC 146
Query 242 AATTTCTTCT--ACAACGCCGAAG-AGGA-AGAAAGAATCTGTGTTTCTTCGTTGTGGCT 297
|||| |||| | || | | ||| || || ||||||||||| || |||||||||
Sbjct 147 -ATTT-TTCTGGAGAATG-C-AAGTTCGAGAGGAAGAATCTGTG----TT-GTTGTGGCT 197
Query 298 TATTTCTTT-CTCTATTGCTATTTATGTTC-----CG--T-A-----GAAATTTGATCTG 343
||||| ||| | ||||||||||| ||||| | | | |||||||||||||
Sbjct 198 TATTTATTTGGT-TATTGCTATTTTTGTTCGTGGAGGTTTGATTCCGGAAATTTGATCTG 256
Query 344 GTGAATGCTCCTGCGATAAAATTTCCCTGAGCCAACGCGGCTCGGGGGAGATCTGTTATA 403
||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||| || |
Sbjct 257 GTGAATGCTCCGGCGAT-AAATTTCCCTGAGCC-A-GCGGCTCGGGGGAGATCTG-TAAA 312
Query 404 -TCAGCTATGTC-T--T---CATCAACGGACGA--------T--G-----CAGGAACAAC 441
||||||||||| | | ||| ||||||||| | | | ||||||||
Sbjct 313 TTCAGCTATGTCTTCATCGCCATTAACGGACGATGGTGGTTTAAGCTCCTCTGGAACAAC 372
Query 442 A-A----C---AC-ATTC-TCT-T-CAGGAATTCAAACTCTTCGAAACTCAATCGAACTT 489
| | | || ||| ||| | |||||||||||||| ||||||||||||||||||||
Sbjct 373 ACATTCTCTTTACGCTTCTTCTATGCAGGAATTCAAACTGTTCGAAACTCAATCGAACTT 432
Query 490 TTATATGATTGGTTGGGATGGAAGTGGAGTTTATAGAGTACTAAAGATTGATCGTCTTGA 549
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTACATGATTGGTTGGGATCGAAGTGGAGTTTATAGAGTACTAAAGATTGATCGTCTTGA 492
Query 550 TCCATCTGAGCTTAACATTAGTCAAGATTCGACTCATTACACAAAGAAAGAATGTTATGA 609
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 493 TCCGTCTGAGCTTAACATTAGTCAAGATTCGACTCATTACACAAAGAAAGAATGCTATGA 552
Query 610 GTTGCTCAAACGGATACACGAAGGAAATAAAGCTACGGGTGGGCTTAAACTTGTGACTCT 669
|||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||
Sbjct 553 GTTGCTCAAACGGATACATGAAGGAAATAAGGCTACGGGTGGGCTGAAACTTGTCACTCT 612
Query 670 TTGTTATGGTATCATTGGCTTTGTTAAATTCTTGGGACCTTACTATATGCTGCTAATAAC 729
||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 613 TTGTTATGGTATCATTGGCTTTGTTAAATTCTTGGGACCCTATTACATGCTGCTTATAAC 672
Query 730 TGAAAGAAGACACATAGGTGATCTTTTTGGTCACAGTGTCTATGCTGTATCAAAGAGCGA 789
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 673 TGAAAGAAGACAAATAGGTGAAATTTTTGGTCATAGTGTCTATGCTGTATCAAAGAGCGA 732
Query 790 GATAGTTGCCTTGCATAATTCTACTGTACAGTGCAATTTTGCAAAT-TCAAGAGATGAAA 848
||||||||| ||||| ||||||||| |||||||||| |||| ||| | |||||||||||
Sbjct 733 GATAGTTGCGTTGCAGAATTCTACTCTACAGTGCAACATTGCCAATAT-AAGAGATGAAA 791
Query 849 ACAGATATAAGAGACTCTTGTGTATGGTGGACCTTACGAAAGACTTCTTTTTCAGCTATT 908
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ACAGATACAAGAGACTCCTCTGTATGGTGGACCTTACGAAAGACTTCTTTTTCAGCTATT 851
Query 909 CTTACAATGTAATGAGAAGTTACCAGAAGAATGTATGCAATTATGAGACCGGGCATAATC 968
|||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 852 CTTACAATATAATGAGAAGTTACCAGAAGAATGTATGCAATTACGAGACCGGACATGTTC 911
Query 969 TCTATGAGAAAATGTTTGTCTGGAATGAGTTCTTGACTCGGGGAATCCGACATCATCTAC 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 912 TCTATGAGAAAATGTTTGTCTGGAATGAGTTCTTGACTCGGGGAATCCGACATCATCTTC 971
Query 1029 GGAATACCCTGTGGACTGTAGCATTGGTTTATGGTTTCTTCAAGCAGGCATCTCTTTCTG 1088
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 972 GGAATACCCTGTGGACTGTAGCATTGGTTTATGGTTTCTTTAAGCAGGCCTCTCTTTCTG 1031
Query 1089 AATCTGGGAAGGATTTTAAGATCACCCTTATCGCTAGGCGTTCCCGTCATAATGCTGGAA 1148
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1032 AATCTGGGCGGGATTTTAAGATCACCCTTATTGCTAGGCGTTCCCGTCATAATGCTGGAA 1091
Query 1149 CCAGGTACTTGAAGCGAGGAGTAAACAGAAATGGTGATGTTGCCAATGATGTCGAGACCG 1208
||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |
Sbjct 1092 CCAGGTACTTGAAGCGAGGAGTAAACAGATATGGCAATGTTGCCAATGACGTCGAGACTG 1151
Query 1209 AACAGATAGTGTCTGAAGATGTTCCTGAAGACCACCCTATGCAAATAAGTTCTGTTGTGC 1268
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1152 AGCAGATAGTGTCCGAAGATGTTCCTGAAGACCACCCTATGCAAGTAAGTTCTGTTGTGC 1211
Query 1269 AGAATCGTGGCTCAATCCCTCTTTTCTGGTCACAAGAGACCTCACGACTGAATCTAAAGC 1328
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AGAATCGTGGCTCAATCCCACTTTTCTGGTCACAAGAGACCTCACGACTGAATCTAAAGC 1271
Query 1329 CAGATATAGTCTTGTCAAAAAAGGAACCAAACTATGAGGCGACTAGGCTTCACTTTGATA 1388
| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1272 CGGATATAGTCTTGTCAAAAAAAGAACCAGACTATGAGGCGACTAGACTTCACTTTGATA 1331
Query 1389 ACCTTGTAGAACGATATGGAAACCCCATCATCATTCTGAACTTGATCAAGACAAAAGAGA 1448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1332 ACCTTGTAGAACGATATGGAAACCCCATCATCATTCTGAACTTGATCAAGACAAAAGAAA 1391
Query 1449 GGAGGCCTAGAGAGTCAATCCTACGAGAAGAGTTTGTTAATGCAATTGACTTTATAAACA 1508
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1392 AGAGGCCTAGAGAGTCAATCCTCCGAGAAGAGTTTGTTAATGCAATTGACTTCATAAACA 1451
Query 1509 AAGATTTACCTGAGGAAAATCGTCTGCGATTCCTCCACTGGGACCTGCACAAACATTTTC 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 AAGATTTACCTGAGGAAAATCGTCTGCGATTCCTCCACTGGGACCTGCACAAACATTTTC 1511
Query 1569 GGAGCAAAACAAAAAATGTCTTGGCACTCCTTTGCAAAGTAGCTACCTGCGCATTGATGC 1628
||| ||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1512 AGAGAAAAACAACAAATGTCTTGGCACTCCTTGGCAAAGTAGCTGCCTGTGCATTGATGC 1571
Query 1629 TAACCGATTTATTTTACTATCAAGTTACACCAGCCATGACGATTGAGGATTCCATGAGCT 1688
|||| ||||| |||||||||||||| |||||||| |||| |||||||| || ||||||||
Sbjct 1572 TAACAGATTTGTTTTACTATCAAGTAACACCAGCTATGAAGATTGAGGGTTACATGAGCT 1631
Query 1689 TGTCTTCTTCTTCTGATGCCGACACTGGGGATATATCTCCACACACTAGTTCTGATGATG 1748
|||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1632 TGTCGTCCTCTTCTGATGCTGACACTGGGGATATATCTCCACACACTAGTTC---TGATG 1688
Query 1749 ATAATGGGGACCATGATAGTCTTGAGAAAAAATCTAGTAGGAGTAAGAATATTGCTTATG 1808
|| | ||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1689 ---AT---G---ATGATAGCCTTGAGAAGAAATCCAGTAGGAGTAAGAATATTGCTTATG 1739
Query 1809 GAAAATGTGATGTCAAGCCACCCAGGCTTCAGAGTGGCGTTCTTAGGACCAATTGCATTG 1868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AAAAATGTGATGTCAAGCCACCCAGGCTTCAGAGTGGCGTTCTTAGGACCAATTGCATTG 1799
Query 1869 ATTGCCTTGACCGTACAAATGTAGCACAATATGCATACGGTTGGGCTGCTCTTGGGCAGC 1928
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1800 ATTGCCTTGACCGTACAAATGTAGCACAATATGCATATGGTTGGGCTGCTCTTGGGCAGC 1859
Query 1929 AGCTTCATGTATTAGGGATTAGAGATGTTCCCGCCATAGAACTTGATGATCCCTTGGCTA 1988
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1860 AGCTACATGTATTAGGGATTAGAAATGTTCCAGCCATAGAACTTGATGATCCCTTGGCTA 1919
Query 1989 TTTCGTTAATGGGGTTGTATGAGAGAATGGGTGACACACTAGCTCATCAGTATGGCGGAT 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1920 TTTCGTTAATGGGGTTGTATGAGAGAATGGGTGACACACTAGCTCATCAGTATGGTGGAT 1979
Query 2049 CCGCAGCCCACAACAAGGTATTCAGTGAGAGAAGAGGCCAGTGGAGAGCAGCAACTCAGT 2108
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1980 CCGCAGCCCACAACAAGGTTTTCAGCGAGAGAAGAGGCCAGTGGAGAGCAGCAACTCAGT 2039
Query 2109 CACAGGAGTTCTTGAGAACTCTACAACGATATTATAACAACGCATATATGGATGCAGATA 2168
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2040 CACAGGAGTTCTTGAGAACTCTGCAACGATATTATAATAACGCATATATGGATGCAGATA 2099
Query 2169 AACAAGACGCCATTAATATATTTCTTGGCACGTTCCAGCCTGAACAGGGAATGCCAGCAA 2228
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2100 AACAAGACGCCATTAATATATTTCTTGGCACATTCCAGCCTGAACAGGGAATGCCAGCAA 2159
Query 2229 TCTGGGAGTTACGATCAAATTCTCTCTCCAATGGACGAAATGGAGAGATGAACATAGGGA 2288
|||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 2160 TCTGGGAGTTACAATCAAATTCTCTCTCTAATGGACGAAATGGAGAGATGAGCATAGCAA 2219
Query 2289 AAGATGAAAGGTTTCTTGTGAAAAGGTGCTTATCAGATGGAGATTTTCTCCATGAAAGTT 2348
||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 2220 AAGATGAGAGGTTTCTTGTGAAAAGGTGCTTATCAGATGGGGACTTTCTCCACGAAAGTT 2279
Query 2349 GCACTCCGCTGTCAGCCATGAGTAGCAATCATGAAAGCATGCCACAAAAAGGTTTCTCCG 2408
||| ||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2280 GCATTCCACTGCCAGCCATGAGTAGCAATGATGAAAGCATGCCACAGAAAGGTTTCTCCG 2339
Query 2409 CACCATTACAGCATGTGAGCCATATTCTTTCAGAGTCATCGTCTGATATACCAGTATCTA 2468
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2340 TACCATTACAGCATGTGAGCCATATTCTTTCAGAGTCATCATCTGATATACCAGTTTCTA 2399
Query 2469 ATGATGTAGCATTATCAAGGTGTACTCCTTCAATGCC-CAGGAAACAGCTCTTCGGAGAT 2527
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2400 ATGATGTAGCATTATCAAGGTGTACTCCTTCAATGCCTC-GGAAACAGCTCTTCGGAGAT 2458
Query 2528 GTGCAAAAGGTTCATCGTTTTGGTAGCGACCAAGTTTACTTTGGCGGGGAGGAAGACATG 2587
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2459 GTGCAAAAGGTTCATCGTTTTGGTAGCGATCAAGTTTACTTTGGTGGGGAGGAAGACATG 2518
Query 2588 TCTAGTGTCTCCAATTTTGTTGATATTGAGTGGCTTT---CATCAGAAAACCCATGCGAG 2644
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 2519 TCTAGTGTCTCCAATTTTGTTGATGTTGAGTGGCTTTTATCATCAGAAAATCCATGCGAG 2578
Query 2645 AATGCTTTATTTGACAGGTCGTCGGAGCTTACAAGAAATTTGACAGCGGAGACGTCTTCA 2704
|||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 2579 AATGCTCTATTTGACAGGTCGTCGGCGCTTACAAAAAATTTGACAGCGAAGACGTCTTCA 2638
Query 2705 ACAGAGAATAGCGTCAACGGAGTAGGACAATCGGCACCAACTATAAGTGAAAGTGGGTCA 2764
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2639 ACAGAGAATAGCGTCAATGGAGTAGGACAATCGGCACCAACTACAAGTGAAAGTGGGTCA 2698
Query 2765 AGCAGCAGTAAGGGAAAGGAACCGATGGGAACAAAGATTCGGGAGGACTTTCCAGATAGC 2824
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2699 AGCAGCAGTAAGGGAAAGGAACCGATGGGAACAAAGATTCGGGATGACTTTCCAGATAGC 2758
Query 2825 TTCAAAGAATGGGTAGCATACGGTGAAGCTCTCTGCCACTGAGTCCCAAAATCTTAGGAA 2884
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2759 TTCAAAGAATGGGTAGCATACGGTGAAGCACTCTGCCACTGAGTCCAAAAATCTTAGGAA 2818
Query 2885 CACGGAATGGTACAAAAGAGTAGTACATTATTGCTGAATAGCTGAAACCTTTGTGTTGCA 2944
||||||||||||||||||||||||| | || ||||||||||||||| ||||| |||||
Sbjct 2819 CACGGAATGGTACAAAAGAGTAGTATAATA---CTGAATAGCTGAAACATTTGTATTGCA 2875
Query 2945 TAAAATTTCATCATTCGTTTGAAACCTTTATTTTTCCCCCTAATTTGTTTTGTAAATAGT 3004
|||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 2876 TAAAATTTCATCTTTCTTTTGAAACCTTT-TTTT-CCCCCTAATTTGTTTTGTAAATAGT 2933
Query 3005 GTAATGTTTATATAAAGCTTGTAAGAAT-CATGTTAAAATTATTTGTAG 3052
||||||||||||||||||||||| ||| | ||| | ||||||||||||
Sbjct 2934 GTAATGTTTATATAAAGCTTGTAC-AATTCTTGTGAGAATTATTTGTAG 2981
> Ahg488990 jgi|Araly1|488990|fgenesh2_kg.6__2124__AT5G20840.1
Length=3386
Score = 1912 bits (1035), Expect = 0.0
Identities = 2003/2462 (81%), Gaps = 100/2462 (4%)
Strand=Plus/Plus
Query 458 GAATTCAAACTCTTCGAAACTCAATCGAACTTT-TATATGATTGGTTGGGATGGAAGTGG 516
||||||||||||||||| ||||||||||| ||| || |||||||||||| ||| |||||
Sbjct 527 GAATTCAAACTCTTCGAGACTCAATCGAA-TTTCTACATGATTGGTTGGAATGCTAGTGG 585
Query 517 AGTTTATAGAGTACTAAAGATTGATCGTCTTGATCCATCTGAGCTTAA-CATTAGTCAAG 575
||| |||||| |||||||||| || || || ||| | ||||||||||| | | || | |
Sbjct 586 AGTCTATAGAATACTAAAGATAGACCGCCTCGATGCGTCTGAGCTTAATC-TCAGAGAGG 644
Query 576 ATTCGACT-CATTACA-CAAAGAAAGAATGTTATGAGTTGCTCAAACGGATACACGAAGG 633
|||||||| | ||| | |||| |||||||| || |||||||| |||||||||||||||||
Sbjct 645 ATTCGACTGC-TTATACCAAA-AAAGAATGCTACGAGTTGCTTAAACGGATACACGAAGG 702
Query 634 AAATAAAGCT-ACGGGTGGGCTTAAACTTGTGACTCTTTGTTATGGTATCATTGGCTTTG 692
||| ||| | || ||||| || |||||||| ||| |||||||||| |||||||| ||
Sbjct 703 AAA-CAAGGTGACTGGTGGACTCAAACTTGTCACTGTTTGTTATGGAATCATTGGGTTCA 761
Query 693 TTAAATTCTTGGGACCTTACTATATGCTGCTAATAACTGAAAGAAGACACATAGGTGATC 752
|||| || |||||||| ||||| |||||||| ||||||||||||||| | || |||||
Sbjct 762 TTAAGTTTTTGGGACCATACTACATGCTGCTTATAACTGAAAGAAGAGAGATCGGTGAAA 821
Query 753 TTTTTGGTCACAGTGTCTATGCTGTATCAAAGAGCGAGATAGTTGCCTTGCATAATTCTA 812
||| |||||||||||| |||| || |||||||| || ||| |||| ||||| |||||||
Sbjct 822 TTTGTGGTCACAGTGTTTATGAAGTGTCAAAGAGTGATATAATTGCATTGCAAAATTCTA 881
Query 813 -CTGTACAGTGCAATTTTGCAAATTCAAGAGATGAAAACAGATATAAGAGACTCTTGTGT 871
| || | ||||| ||||||||||||||| |||||||| || ||||||||| |||||
Sbjct 882 GC-GTGCTTTGCAACACTGCAAATTCAAGAGACGAAAACAGGTACAAGAGACTCCTGTGT 940
Query 872 ATGGTGGACCTTACGAAAGACTTCTTTTTCAGCTATTCTTACAATGTAATGAGAAGTTAC 931
|||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||| |
Sbjct 941 ATGGTGGACCTTACAAAAGACTTCTTTTTCAGCTATTCGTACAATATAATGCGAAGTTTC 1000
Query 932 CAGAAGAATGTATGCAATTATGAGACCGG-GCATAATCTCTATGAGAAAATGTTTGTCTG 990
||||||||| ||||| | |||||| || | || ||||||| ||||||||||||| ||
Sbjct 1001 CAGAAGAATATATGCGACCATGAGAGTGGAG-GTACTCTCTATAAGAAAATGTTTGTGTG 1059
Query 991 GAATGAGTTCTTGACTCGGGGAATC-CGACATCATCTACGGAATACCCTGTGGACTGTAG 1049
|||||| ||| |||||||||||| | |||||||| || ||||||||||||||||||||||
Sbjct 1060 GAATGAATTCCTGACTCGGGGAA-CTCGACATCACCTTCGGAATACCCTGTGGACTGTAG 1118
Query 1050 CATTGGTTTATGGTTTCTTCAAGCAGGCATCTCTTTCTGAATCTGGGAAGG-ATTTTAAG 1108
||||||| |||||||| || |||||| || | ||||||||| || ||| || |||| ||
Sbjct 1119 CATTGGTGTATGGTTTTTTTAAGCAGACAACACTTTCTGAAGCT-GGACGGAATTTCAA- 1176
Query 1109 A-TCACCCTTATCGCTAGGCGTTCCCGTCATAATGCTGGAACCAGGTACTTGAAGCGAGG 1167
| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1177 ACTCACTCTTATTGCTAGGCGTTCCCGCCATAATGCTGGAACCAGGTACTTGAAACGAGG 1236
Query 1168 AGTAAACAGAAA-TGGTGATGTTGCCAATGATGTCGAGACCGAACAGATAGTGTCTGAAG 1226
| ||||| |||| ||| ||||||| |||||||| || || || |||||||||||||| |
Sbjct 1237 AATAAAC-GAAAGTGGCAATGTTGCTAATGATGTGGAAACAGAGCAGATAGTGTCTGAGG 1295
Query 1227 ATGTTCCTGAAGACC-ACCCTATGCAAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATC 1285
| ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1296 ACGTTCCTGTAGACCGTCCC-ATGCAAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATC 1354
Query 1286 CCTCTTTTCTGGTCACAAGAGACCTCACG-ACTGAATCTAAAGCCAGATATAGTCTTGTC 1344
||||| ||||||||||| ||||||||||| | |||| | ||||| |||||||| |||||
Sbjct 1355 CCTCTATTCTGGTCACAGGAGACCTCACGGA-TGAAAGTTAAGCCTGATATAGTATTGTC 1413
Query 1345 AAAAAAGGAACCA-AACTATGAGGCGACTAGGCTTCACTTTGATAACCTTGTAGAACGAT 1403
||||| ||| || ||||||||||| ||||| ||||||||||| |||||||| || ||||
Sbjct 1414 AAAAAGGGA-CCTGAACTATGAGGCAACTAGACTTCACTTTGAAAACCTTGTGGAGCGAT 1472
Query 1404 ATGGAAACCCCATCATCATTCTGAACTTGATCAAGACAAAAGAGAGGAGGCCTAGAGAGT 1463
|||||| ||||||||| |||||||||||||||||||| || ||||||| || || ||||
Sbjct 1473 ATGGAATCCCCATCATTATTCTGAACTTGATCAAGACCAACGAGAGGAAACCCAGGGAGT 1532
Query 1464 CAATCCTACGAGAAGAGTTTGTTAATGCAATTGACTTTATAAACAAAGATTTACCTGAGG 1523
| || || || | |||||||| |||||||||||||||||||||||||||| | || || |
Sbjct 1533 CGATTCTCCGGGCAGAGTTTGCTAATGCAATTGACTTTATAAACAAAGATCTGCCGGAAG 1592
Query 1524 AAAATCGTCTGCGATTCCTCCACTGGGACCTGCACAAACATTTTCGGAGCAAAACAAAAA 1583
||||||| || |||||||||| |||||| ||||||||||||||| ||||||||| |||
Sbjct 1593 AAAATCGGCTTAGATTCCTCCATTGGGACTTGCACAAACATTTTCACAGCAAAACAGAAA 1652
Query 1584 ATGTCTTGGCACTCCTTTGCAAAGTAGCTACCTGCGCATTGATGCTAACCGATTTATTTT 1643
| || |||||||| ||| | ||||||||| | || || ||||||||||| | || ||||
Sbjct 1653 ACGTATTGGCACTTCTTGGAAAAGTAGCTGCTTGTGCTTTGATGCTAACAGGGTTCTTTT 1712
Query 1644 ACTATCAAGTTACACCAGCCATGACGATTGAGGATTCCATGAGCTTGTCTTCTTCTTCTG 1703
| |||||| |||||||||| |||| | |||||| || |||||||||||||| ||| |
Sbjct 1713 ATTATCAACTTACACCAGCAATGAAGCTTGAGGGTTATATGAGCTTGTCTTCATCT---G 1769
Query 1704 ATGCCGACACTGGGGATATATCTCCACACACTAGTTCTGATGATGATAATGGGGACCATG 1763
||||||| | || | ||||||| | ||||||||||||||||| | |||| ||
Sbjct 1770 ATGCCGATA-TG----T----CTCCACATAATAGTTCTGATGATGATAGTAGGGATTGTG 1820
Query 1764 ATAGTC-TT-GAGAAAAAATCTAGTAGGAGTAAGAATATTGCTTATGGAAAATGTGATGT 1821
| || || ||||| | | | | ||||||||| || | |||| | | ||||
Sbjct 1821 AC--TCATTAGAGAAGAGTTTTCGCCCAAGTAAGAATGTTACAAATGGCGATTATGATAC 1878
Query 1822 CAAGCC-ACCCAGGCTTCAGAGTGGCGTTCTTAGGACCAATTGCATTGATTGCCTTGACC 1880
|||||| | | ||||| ||||| || || || ||||| || ||||| ||||||||||| |
Sbjct 1879 CAAGCCTAGC-AGGCTCCAGAGGGGAGTGCTGAGGACTAACTGCATAGATTGCCTTGATC 1937
Query 1881 GTACAAATGTAGCACAATATGCATACGGTTGGGCTGCTCTTGGGCAGCAGCTTCATG-TA 1939
|||||||||| || ||||||||||| |||||||||||||| ||||| |||||||||| |
Sbjct 1938 GTACAAATGTTGCCCAATATGCATATGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCT- 1996
Query 1940 TTAGGGATTAGAGATGTTCCCGCCATAGAACTTGATGATCCCTTGGCTATTTCGTTAATG 1999
||||| |||||||||| ||| | ||||||||||||||||| ||| ||| | | ||||||
Sbjct 1997 TTAGGAATTAGAGATGCTCCAACAATAGAACTTGATGATCCTTTGTCTAGTACTTTAATG 2056
Query 2000 GGGTTGTATGAGAGAATGGGTGACACACTAGCTCATCAGTATGGCGGATCCGCAGCCCAC 2059
||||| || ||||||||||| ||||| |||||| |||| ||||| ||||| |||||||||
Sbjct 2057 GGGTTATACGAGAGAATGGGAGACACTCTAGCTTATCAATATGGTGGATCTGCAGCCCAC 2116
Query 2060 AACAAGGTATTCAGTGAGAGAAGAGGCCAGTGGAGAGCAGCAACTCAGTCACAGGAGTTC 2119
|| ||||| || ||||| || |||| ||||||||||||||||| |||||||| ||||||
Sbjct 2117 AATAAGGTTTTTAGTGAAAGGCGAGGACAGTGGAGAGCAGCAACCCAGTCACAAGAGTTC 2176
Query 2120 TTGAGAACTCTACAACGATATTATAACAACGCATATATGGATGCAGATAAACAAGACGCC 2179
||||| ||||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||
Sbjct 2177 TTGAGGACTCTGCAACGTTACTATAATAACGCATATATGGATGCGGATAAACAAGATGCC 2236
Query 2180 ATTAATATATTTCTTGGCACGTTCCAG-CCTGAACA-GGGAATGCCAG-CAATCTGGGAG 2236
||||||||||||||||| || |||| | |||||||| |||| | | || | | ||||||
Sbjct 2237 ATTAATATATTTCTTGGTACTTTCC-GTCCTGAACAAGGGAGT-C-AGGCGGTTTGGGAG 2293
Query 2237 TTACGATCAAATTCTCTCTCCAATGGACGAAATGGAGAGATGAA-CATAGGGAAAGATGA 2295
|| || ||| |||| | |||||||||||||| ||||||||| || ||| ||| |||||||
Sbjct 2294 TTGCGTTCAGATTCCCACTCCAATGGACGAAGTGGAGAGAT-AAGCATGGGGGAAGATGA 2352
Query 2296 AAGGTTTCTTGTGAAAAGGTGCTTATCAGATGGAGATT-TTCTCCATGAAAGTTGCACTC 2354
||||||||||||||| ||||||||||||||||| || | |||||||||||||| |||||
Sbjct 2353 AAGGTTTCTTGTGAAGAGGTGCTTATCAGATGG-GAATATTCTCCATGAAAGTCACACTC 2411
Query 2355 CGCTGTCAGCCATGAGTAGCAATCA-TGAAAGCATGCCACAAAAAGGTTTCTCCGCACCA 2413
|| |||| || |||||||| || | ||||||||| |||| |||||||| | | |
Sbjct 2412 CGATGTCCGCAATGAGTAGGAAG-AGTGAAAGCATATCACATAAAGGTTT-TGTGT-CG- 2467
Query 2414 TTACAGCATGTGAGC-CATATTCTTTCAGAGTCATCGTCTGATATACCAG-TATCTAATG 2471
| ||| || |||| | ||||| ||||||||||||| | ||||| |||| | | ||
Sbjct 2468 TCACACCAAGTGA-CTCATATAATTTCAGAGTCATCACCAGATATGCCAGCTGCCGG-TG 2525
Query 2472 ATGTAGCATTATCAAGGTGTACTCCTTCAATGCCCAGGAAACAGCTCTTCGGAGATGTGC 2531
||||| ||||||| ||||||||||| |||||||| || | ||| | || ||||||| |
Sbjct 2526 ATGTAACATTATCGAGGTGTACTCCGTCAATGCCTAGCACACATTTTTTTGGAGATGCCC 2585
Query 2532 AAAAGGTTCATCGTTTTGGTAGC-GA-CCAAGTTTACTTTGGCGGGG-AGGAAGACATGT 2588
|||| |||| | | |||||| | ||| ||||||| | | | | | ||||| ||||
Sbjct 2586 AAAAAATTCAACATAATGGTAGTAGCTCCA--TTTACTT-GTCCGAGCAAGAAGATATGT 2642
Query 2589 CTAGTGTCTCCAATTTTGTTGATATTGAGTGGCTTTCATCA--G-AAAACCCATGCGAGA 2645
|||||||||| |||||||||||||||||||||||||| || | |||| | ||| ||||
Sbjct 2643 CTAGTGTCTCAAATTTTGTTGATATTGAGTGGCTTTCGTCGTCGGAAAATCTATGTGAGA 2702
Query 2646 ATGCTTTATTTGAC-AGGTCGTCGGAGCTTACAAGAAATTTGACAGCGGAGACGTCTTCA 2704
| | | ||| | | ||| ||| | | |||||| | | | || |||||||||||||||
Sbjct 2703 ACGATCAATT-GTCCAGGCCGTTAGCGGTTACAATATACTCAACCGCGGAGACGTCTTCA 2761
Query 2705 ACAGAGAATAGCGTCAACGGA-GTAGGACAATCGGCACCAACTAT-AAGTGAAAGTGGGT 2762
||||||||| ||| | || | | ||| ||| | ||| |||| || || ||||| |
Sbjct 2762 TCAGAGAATATTATCA-CTGAAGCAAAACATTCGACGCCAGCTATGAAC-GAGAGTGGAT 2819
Query 2763 CAAGCAGCAGTAAGGGAAA-G-----G---AA-CCGA--TGG--G-A-ACA-AAG-ATTC 2804
|||||||||| |||||||| | | || |||| || | | ||| || ||||
Sbjct 2820 CAAGCAGCAGGAAGGGAAAAGAACCAGTGGAAACCGAACTGTCTGTACACACAAATATTC 2879
Query 2805 GGGAGGACTTTCCAGATAGCTTCAAAGAATGGGTAGCATACGGTGAAGCTCTCTGCCACT 2864
|||| || |||||||||||||||||| |||||||||||||||| ||||| |||||||| |
Sbjct 2880 GGGATGATTTTCCAGATAGCTTCAAACAATGGGTAGCATACGGGGAAGCACTCTGCCATT 2939
Query 2865 GA 2866
||
Sbjct 2940 GA 2941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118079759500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5