BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43230.1
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484792 jgi|Araly1|484792|fgenesh2_kg.5__784__AT3G43230.1 2375 0.0
> Ahg484792 jgi|Araly1|484792|fgenesh2_kg.5__784__AT3G43230.1
Length=1724
Score = 2375 bits (1286), Expect = 0.0
Identities = 1582/1716 (92%), Gaps = 56/1716 (3%)
Strand=Plus/Plus
Query 22 GAATAAAATATTCCCCGAGGCGCCGTGTTCTTGTTGCTTGCTACTTATCTTCTTCTTCAA 81
|||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||
Sbjct 1 GAATAAAATATTCCCC--GGCGCCGTGTTCTTG--G-TCGCTACTTATCTTCTTCTTCAA 55
Query 82 TCCCATAAATCGGATTTGCAAAATTTTCTTAACCTAATTCGTTTCTTCGCGATCAAACCA 141
|||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 56 TCCCATAAATCGGAATTGC-TATTTTTCTTAACCTAATTCGTTTCTTCGCGATCAAAGCA 114
Query 142 CAGATTTTTCAATTTTAGTGAAGTTTCATTTTTTAAGGCATGGCTACTCTCAACGGAAAA 201
||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 115 CAGGTTTTTCAATTTTAGTGAATTTTCA-ATTTTAAGGCATGGCTACTCTCAACGGAAAA 173
Query 202 GCTTCTCCGTATTCTGAAGAAAACATCAAATTCAAGTatgatgattatgatgatgatgat 261
| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 174 GTTTCTCCGTATTCTGAAGAAAACATCAAATTCAAGTATGATG---AT--T-ATGATGAT 227
Query 262 gatgatgatgatggtagtggtagtggtagtggtggtggttatgaagatggACCTAAATGG 321
|||||||||||| | | | | || || | | | ||||||||||||||||
Sbjct 228 GATGATGATGAT-G-A-T-G--GT--TA-------T-G----G-AGATGGACCTAAATGG 266
Query 322 TCTGTTCAATCAATCCCCACAAAGAAAGAGGTGGAGTATCCGATTATCGACTCAGGAGAT 381
||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 267 TCTGTTCAATCAAACCCCACAAAGAAGGAACCGGAGTATCCGATTATCGACTCTGGAGAT 326
Query 382 TACGTTGACGACGGATATGATTCATCCGGCGAGCTCTCTACAACGACGACGCCGCCGATT 441
|| ||||| ||||||||||||||| | | |||||||||| |||| ||||||||
Sbjct 327 TATGTTGATGACGGATATGATTCAGCTGACGAGCTCTCT------ACGA---CGCCGATT 377
Query 442 CAAGGAAATGAG-AAACCTGAAGTTAACTTGAAAAACGTTTTAACTGGGTTGATTGCTAT 500
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 378 CAAGGAAATG-GTAAACCTGAAGTAAACTTGAAAAACGTTTTAACTGGGTTGATTGCTAT 436
Query 501 TGTTACTGGACGGAA-TA--A-G-AA----TCCGTTAGATCAGAAAAACCCGTCTTCGAA 551
|||||| || ||||| | | | || | ||||||||||||||| ||||||||||||
Sbjct 437 TGTTACCGGGCGGAACAAGGACGTAAGGGGTTCGTTAGATCAGAAAATCCCGTCTTCGAA 496
Query 552 TGTTTCGTTTCTTGGCTCTGGCACGAACGGGGATACTTTTGTTCATTCGTCTGTTTACAT 611
||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||
Sbjct 497 TGTTTCGTTTCTTGGCTCTGGCAAGAACGGAGATACTTATGTTCACTCGTCTGTTTACAT 556
Query 612 ACCGAGTGCTCCGCCTCTACTTGAACCTAGTGGGATAAACTATAGTGTTTACAAGGAGTT 671
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 557 ACCGAGTGCTCCGCCTCTACTTGAACCTAGTGGGATTAATTACAGTGTTTACAAGGAGTT 616
Query 672 GCTTGAAGCTGAACCTCCTGAGTGGCTACCTGATAGTTTAGCTAGTACTTGCATGCAGTG 731
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 617 GCTTGAAGCTGAACCTCCTGAGTGGCTACCTGATAGTTTAGCTACTACTTGCATGCAGTG 676
Query 732 TTCTACTCCTTTTACTGCAATTACGTGTGGTAGGCATCATTGTCGGTTCTGCGGAGGGAT 791
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 677 TTCTACTCCTTTTACTGCAATCACGTGCGGTAGACATCATTGTCGGTTCTGCGGAGGGAT 736
Query 792 ATTTTGTAGAAACTGTTCGAAAGGGCGGTGTTTGATGCCTAGTCGGTTTCGGGAAAGGAA 851
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 737 ATTTTGTAGGAACTGTTCGAAAGGGAGGTGTTTGATGCCTAGTCGGTTTCGGGAAAGGAA 796
Query 852 TCCTCAGAGAGTGTGTGATTCTTGCTACGAGAGGCTTGATCCTTTGCAATGTGTTCTTAT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TCCTCAGAGAGTGTGTGATTCTTGCTACGAGAGGCTTGATCCTTTGCAATGTGTTCTTAT 856
Query 912 TAACTCTATTAGTAATGCTGTGCAAGTTGCAAAGCATGATGTTGTTGATTGGACTTGCTC 971
||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct 857 TAACTCTATTAGTAATGCTATGCAAGTAGCCAAGCATGATGTTGTGGATTGGACTTGCTC 916
Query 972 AAGAGGATGGTTGAATCTCCCTGTTGGTCTATCCATGGAAGATGAGATATACAAGGC-TG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 917 AAGAGGATGGTTGAATCTCCCTGTTGGTCTATCCATGGAAGATGAGATATACAAGGCAT- 975
Query 1031 CTAATACGTTGAGAGGTTACTGCCAGGTAGCAAGACTAGACCCTGAGAAATCCATACCGC 1090
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 976 CTAATACGTTGAGAGGTTACTGCCAGGTTGCAAGACTAGACCCTGAGAAATCCATACCGC 1035
Query 1091 ATGCTGTTCTTAGTCGAGCTAAAGGTTTGGCAATCATAACGGTTGCCAAGGCTGGGGCTT 1150
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1036 ATGCAGTTCTTAGTCGAGCTAAAGGTTTGGCAATCATAACGGTTGCTAAGGCTGGGGTTT 1095
Query 1151 TACTGTCATACAAACTCGGGACTGGTCTGGTAATATCTCGGAGACCAGACGGGTCATGGT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TACTGTCATACAAACTCGGGACTGGTCTGGTAATATCTCGGAGACCAGACGGGTCATGGT 1155
Query 1211 CTGCTCCATCTGCCATACTATCAGTAGGTCTTGGATGGGGTGCACAGATTGGAGGTGAGT 1270
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1156 CTGCTCCATCTGCCATACTATCAGTAGGTCTTGGATGGGGTGCTCAGATTGGAGGTGAGT 1215
Query 1271 TGATGGACTTCATAATAGTGCTTCATGATGTGAAAGCCGTGAAGACATTCTGCAGCAGAA 1330
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 1216 TGATGGACTTCATAATAGTGCTGCATGATGTGAAAGCGGTGAAGACGTTCTGCAGCAGAA 1275
Query 1331 TGCACTTCTCTCTAGGCGCGGGATGCAGTGCAGCAGCAGGGCCTATCGGGAGAGTGTTGG 1390
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1276 TGCATTTCTCTCTAGGCGCGGGATGCAGTGCAGCAGCAGGACCTATCGGGAGAGTGCTGG 1335
Query 1391 AGGCTGACCTTCGAGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCA 1450
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1336 AAGCTGACCTTCGTGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGTAGCA 1395
Query 1451 AAGGGGCATTTGTGGGAGTATCTCTAGAAGGAAATCTGGTGGCAACAAGAAGGGACATGA 1510
||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||
Sbjct 1396 AAGGGGCATTTGTGGGAGTATCTCTTGAAGGAAATGTGGTGGCCACACGAAGGGACATGA 1455
Query 1511 ATGTAAAGTTCTATGGTGATCCATACCTATCCACATCGGACATTCTACTTGGGATGGTGG 1570
|||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1456 ATGTAAAGTTCTATGGCGATCCATACCTAACCACAACAGACATTCTACTTGGGATGGTGG 1515
Query 1571 ATCAACCCAAGGCAGCTGAACCGTTGTACACCGCCCTCCGAGAGCTCTATGCTCGTTTGC 1630
||||||| |||||||||| |||||||||||| |||||| | || ||||||||||| ||||
Sbjct 1516 ATCAACCGAAGGCAGCTGCACCGTTGTACACTGCCCTCAGGGACCTCTATGCTCGGTTGC 1575
Query 1631 GCCCGTAATCTCCATTCACATTACAAACTACGCTTTGTATATATACGCTTCTCAAATTCG 1690
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1576 GCCCATAATCTCCATTCACATTACAAACTACTCTTTGTATATAAACGCTTCTCAAATTCG 1635
Query 1691 TTTCTATTAAAGTGTAAATGTACATAAATTGTTTCT 1726
|| ||||| ||||||| |||||||||||||||||||
Sbjct 1636 TTACTATTTAAGTGTACATGTACATAAATTGTTTCT 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70009870310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5