BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43250.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936937 jgi|Araly1|936937|scaffold_501128.1 785 0.0
> Ahg936937 jgi|Araly1|936937|scaffold_501128.1
Length=784
Score = 785 bits (425), Expect = 0.0
Identities = 545/604 (90%), Gaps = 4/604 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGAACGCAAAAACCTAAACAAGTATTATCCGCCAGATTTTGATCCGAAGAAGATA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 24 ATGGGAGAACGCAAAAACCTAAACAAGTATCATCCGCCAGATTTTGATCCGAAGAAGATA 83
Query 61 CACCGCATCAAGAAACCGAAGAACCAGCAGAAAAAGATTAGATTTATGCTTCCAGTTCGT 120
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 84 CATCGCATCAAGAAACCGAAGAACCAGCAGAAAAAGATTCGATTTATGCTTCCAGTGCGT 143
Query 121 GTTCGCTGCAACACATGTGGTAATTACATGTCGGAAGGCACCAAATTCAATTGCCGTCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 144 GTTCGCTGCAACACATGTGGTAATTACATGTCGGAAGGCACCAAATTCAATTGCCGTGAA 203
Query 181 GAAGACGTCATCACCGAGACGTACCTAGGTCTAAAAATCCACAGGTTCTACATCAAGTGC 240
||||||||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||
Sbjct 204 GAAGACGTCATCACCGAGACGTATCTAGGTATTAAAATCCATAGGTTCTACATTAAGTGC 263
Query 241 ACCAAATGCTTAGCAGAGTTGACAATCAAAACCGATCCAAAGAACCATAGTTATACTGTA 300
| | |||||| |||||| | ||||| ||||||||||||| |||| | |||||||||||
Sbjct 264 AATACATGCTTGGCAGAGGTAACAATTAAAACCGATCCAAGGAACGAGAGTTATACTGTC 323
Query 301 GAATCAGGTGCAAGTTGCCTTTATAATGGCCATGAGGACATTGAGGAGGAGAAGAA-GAA 359
||||||||||||| ||||||||||||||| || || | | ||| || ||| | | ||
Sbjct 324 GAATCAGGTGCAACTTGCCTTTATAATGGACACGAAAAGGTAGAGAAGAAGAGGCATGAG 383
Query 360 GAAGCATGAAAACGCATTAGAATCCCTAGAGAACAGAACTGTGGTATCTAAAAGAGAGAT 419
||| || ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 384 GAAACA-GAAAACGCATTGGAATCATTAGAGAAGAGAACTGTGGTATCTAAAAGAGAGAT 442
Query 420 TGAAGTTATGGCTAGTCTTGATGAGTT-AAAGTCGATGAAGTCTAGACGAGCCTCATTGA 478
||||||||||||| | ||||||||||| ||| || ||||||||||||||||||||| |||
Sbjct 443 TGAAGTTATGGCTGGGCTTGATGAGTTGAAA-TCTATGAAGTCTAGACGAGCCTCAGTGA 501
Query 479 GTGTAGACTACATGCTTGAGGATTTGAGTAGAAGaaaaaaaCAAGAAGAAGAGAATGTTG 538
| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 502 GCGTAGACTCCATGCTTGAGGCTTTGAGTAGAAGAAAAAAACAAGAAGAAGAGAACGTGG 561
Query 539 AGGAAGAATTGCTTATTAAGTCGATAAAATTTGGTAAGAGGATTagaactgatgaagaga 598
||||||| ||||| |||||||||||| ||||||||||| ||| ||| | |||||||||||
Sbjct 562 AGGAAGAGTTGCTCATTAAGTCGATACAATTTGGTAAGCGGAGTAGGATTGATGAAGAGA 621
Query 599 aaaa 602
||||
Sbjct 622 AAAA 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5