BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43270.1
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936938 jgi|Araly1|936938|scaffold_501129.1 2447 0.0
> Ahg936938 jgi|Araly1|936938|scaffold_501129.1
Length=1625
Score = 2447 bits (1325), Expect = 0.0
Identities = 1529/1629 (94%), Gaps = 8/1629 (0%)
Strand=Plus/Plus
Query 317 CAAGATTCTACCTGAGATAGATGGCGAAGTTCCGACAAATGGGTTCATCAATCTTCTTCC 376
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CAAGATTCTACCGGAGATAGATGGCGAAGTTCCTACAAATGGGTTCATCAATCTTCTTCT 60
Query 377 TCTTTCTTATCATAATCTCATTATGTTCCGCCCACAAAGAAGCGTTTTCTTCAACT-GAT 435
|||||||||||| | || |||||||||||||||||||| ||||||||||| ||| | |
Sbjct 61 TCTTTCTTATCACCGTTTCTTTATGTTCCGCCCACAAAGAGGCGTTTTCTTCTACTGGGT 120
Query 436 CTTGTTCAAATGGAGTGCTTGAGAGTCCCACCGTTAGAGTTTGCTGAAGCGGCCAAAACC 495
| ||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||
Sbjct 121 -TGGTTCAAATGGAGTGCTTGAAAGTCCCGCCGTTAGAGTTCGCCCAAGCGGCCAAAACC 179
Query 496 GTCGTCGACGCTATAACAAAA-GCGGTAGCTATAGTGTCCAAGTTCGACAAGAAAGCCGG 554
||||| || ||||| ||||| |||||||||||||| || || ||||||||||||| |||
Sbjct 180 GTCGTTGATGCTAT-CCAAAAGGCGGTAGCTATAGTTTCAAACTTCGACAAGAAAGTCGG 238
Query 555 GAAGTCGCGAGTCTCCAATGCGATTGTTGATTGTGTTGATCTTCTTGATTCTGCCGCCGA 614
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 GAAGTCACGAGTGTCCAATGCGATTCTTGATTGTGTTGATCTTCTTGATTCTGCCGCCGA 298
Query 615 AGAGCTTTCTTGGATCATCTCTGCCTCTCAATCCCCCAACGGTAAAGACAATAGCACAGG 674
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 299 AGAGCTTTCTTGGATCATCTCTGCCTCTCAAAATCCCAACGGTAAAGACAACAGTACAGG 358
Query 675 AGACGTGGGTTCGGATCTAAGGACATGGATAAGCGCCGCACTTTCTAACCAGGACACATG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 AGACGTGGGTTCGGATCTAAGGACATGGATAAGCGCCGCACTTTCTAACCAGGACACGTG 418
Query 735 TCTTGACGGTTTCGAGGGTACTAATGGAATTATCAAAAAGATAGTGGCCGGTGGTCTTAG 794
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 TCTTGACGGCTTCGATGGTACTAATGGAATTATCAAAAAGATAGTGGCTGGTGGTCTTAG 478
Query 795 CAAG-GTTGGTACGACCGTTCGGAATTTACTAACGATGGTTCACTCTCCTCCCTCTAAGC 853
| | || ||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 479 C-CGCGTCGGTACGACCGTCCGAAATCTACTAACGATGGTTCACTCTCCTCCCTCTAAGC 537
Query 854 CCAAACCTAAGCCCATTAAGGCCCAGACAATGACGAAAGCTCATAGTGGCTTCAGTAAGT 913
||||||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||||
Sbjct 538 CCAAACCCAAGCCCATTAAAGCCCACACGATGACAAAAGCTCATAGTGGCTTCAGTAAGT 597
Query 914 TCCCCTCATGGGTTAAACCCGGTGATCGGAAGTTGTTGCAAACTGATAACATAACGGTTG 973
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCCTCGTGGGTTAAACCTGGTGATCGGAAGTTGTTGCAAACTGATAACATAACGGTTG 657
Query 974 CTGACGCGGTTGTAGCCGCAGACGGGACCGGAAATTTCACGACGATAAGTGACGCGGTGT 1033
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 658 CTGACGCGGTTGTAGCCGCAGACGGGACCGGGAATTTCACGACGATAAGTGACGCAGTGT 717
Query 1034 TGGCTGCACCGGACTATAGTACCAAAAGATATGTCATACATGTAAAAAGAGGTGTGTATG 1093
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 718 TGGCTGCACCGGATTATAGTACCAAAAGATATGTGATACATGTGAAAAGAGGTGTATATG 777
Query 1094 TA-GAGAATGTGGAGATTAAAAAGAAGAAATGGAACATTATGATGGTTGGTGACGGCATC 1152
| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 778 -AGGAGAATGTGGAGATTAAAAAGAAGAAATGGAACATTATGATTGTTGGTGATGGCATC 836
Query 1153 GATGCCACCGTGATCACGGGTAACCGGAGTTTCATCGACGGCTGGACTACTTTCCGATCT 1212
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 GATGCCACCGTGATCACCGGTAACCGGAGTTTCATCGACGGCTGGACTACTTTCCGGTCA 896
Query 1213 GCTACATTTGCTGTGAGCGGTAGAGGATTTATTGCACGCGATATCACCTTCCAAAACACA 1272
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 897 GCTACTTTTGCTGTGAGCGGTAGAGGGTTTATTGGGCGCGATATCACCTTCCAAAACACA 956
Query 1273 GCAGGACCGGAAAAACACCAAGCGGTCGCAATCCGATCCGATACGGATCTCGGGGTCTTT 1332
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCAGGACCGGAAAAGCACCAAGCGGTCGCAATCCGATCCGATACGGATCTCGGGGTCTTT 1016
Query 1333 TATCGATGCGCGATGAGAGGTTACCAAGACACTCTCTATGCCCACTCAATGCGTCAATTC 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TATCGATGCGCGATGAGAGGTTACCAAGACACTCTCTATGCCCACTCAATGCGTCAATTC 1076
Query 1393 TTTAGAGAATGCATTATAACAGGCACTGTAGACTTTATATTCGGAGACGCCACAGCAGTA 1452
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1077 TTTAGAGAATGCATTATAACCGGCACTGTAGACTTTATATTCGGAGACGCCACTGCCGTA 1136
Query 1453 TTCCAAAGCTGCCAAATCAAAGCCAAACAAGGCCTTCCAAACCAGAAGAATAGCATCACG 1512
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTCCAAAGTTGCCAAATCAAAGCCAAACAAGGCCTTCCAAACCAGAAGAATAGCATCACG 1196
Query 1513 GCTCAAGGACGTAAGGATCCAAATGAGCCAACCGGTTTCACAATCCAATTCAGCAATATA 1572
|| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 1197 GCGCAAGGACGTAAGGATCCAAATGAGCCAACAGGATTCACATTCCAATTCAGCAATATA 1256
Query 1573 GCAGCTGATACCGACCTACTTCTAAACTTAAATACTACGGCTACTTACTTAGGTCGGCCG 1632
| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||
Sbjct 1257 GTGGCTGATACCGACCTACTTCCAAACTCAAATATTACGGCTACTTACTTAGGTCGACCG 1316
Query 1633 TGGAAACTATATTCTAGGACGGTGTTCATGCAAAACTACATGAGTGATGCAATCAACCCC 1692
|||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1317 TGGAAATTATATTCTAGAACGGTGTTCATGCAAAACTACATGAGCGATGCAATCAATCCC 1376
Query 1693 GTAGGATGGCTTGAATGGAATGGAAATTTTGCGTTGGATACATTATATTATGGTGAGTAT 1752
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAAGGATGGCTCGAATGGAACGGAAATTTTGCGTTGGATACATTATATTATGGTGAGTAT 1436
Query 1753 ATGAATAGCGGACCGGGGGCTAGTCTTGACCGCCGTGTTAAGTGGCCAGGATACCATGTG 1812
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATGAATAGCGGACCGGGTGCTAGTCTTGACCGCCGTGTTAAGTGGCCAGGATACCATGTG 1496
Query 1813 TTGAATACTTCGGCCGAGGCTAATAATTTTACAGTATCTCAACTCATACAAGGGAACTTG 1872
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1497 TTGAACACTCCGGCCGAGGCTAATAATTTTACGGTATCTCAACTCATACAAGGGAACCTG 1556
Query 1873 TGGTTACCATCAACTGGTATCACGTTCATTGCTGGTCTAGTCTCGTAAATTAATCATGTT 1932
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGGTTACCATCTACTGGTATCACGTTCATTGCTGGTCTAGTCTCGTAAATTAATCATGTT 1616
Query 1933 TGATCGAAT 1941
|||||||||
Sbjct 1617 TGATCGAAT 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82693921895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5