BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43430.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484797 jgi|Araly1|484797|fgenesh2_kg.5__789__AT3G43430.1 686 0.0
> Ahg484797 jgi|Araly1|484797|fgenesh2_kg.5__789__AT3G43430.1
Length=616
Score = 686 bits (371), Expect = 0.0
Identities = 480/533 (90%), Gaps = 6/533 (1%)
Strand=Plus/Plus
Query 29 CTCCAAGTTTTCACAATGACATTCTTCATCGAAGACACTAGTCTCATCATCAGCCACGTT 88
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CTCCAAGTTTTCACAATGACTTTCTTCATTGAAGACACTAGTCTCATCATCAGCCACGTT 60
Query 89 CTCTACAAAACGGC-ACTTATCATCACCGTTTTACGATGGATCTTTGCATGGATCCTCCG 147
|| ||||||||||| | | |||||| |||||||||||||||| || || |||| ||||||
Sbjct 61 CTATACAAAACGGCGA-TAATCATCGCCGTTTTACGATGGATATTCGCCTGGAGCCTCCG 119
Query 148 TTACCGctcaagatcctcctcatcatcatcatctcaatcctcctcttctccttct-attt 206
||||||||| ||||| | ||||||||||||||||||||||||||| |||||| | ||||
Sbjct 120 TTACCGCTCCAGATCATTATCATCATCATCATCTCAATCCTCCTCTACTCCTT-TGATTT 178
Query 207 catcaCAAACCATCAAAGAAAGCCTAGCCGTGTCCGCTTTCCGCGACGCGGTGGAGAGAT 266
|||||||||| |||||||||||||| || || | || ||||||||||||||||||||||
Sbjct 179 CATCACAAACAATCAAAGAAAGCCTCGCTGTAACGGCGTTCCGCGACGCGGTGGAGAGAT 238
Query 267 CTCCCGCGGCGATAAACGACATGTGTGCCGTGTGTCTAGGAGATCTTGAAGACGAGGACG 326
|||||||| | |||||||||| ||| ||||||||||||||||||||||||||||| || |
Sbjct 239 CTCCCGCGACAATAAACGACACGTGCGCCGTGTGTCTAGGAGATCTTGAAGACGATGATG 298
Query 327 AAATCAGAGAGCTTAGGAACTGTA-CTCACGTGTTTCATCGTGATTGTATTGACCGATGG 385
||||||||||||||||||| |||| | || || ||||||||||||||||||||||| |||
Sbjct 299 AAATCAGAGAGCTTAGGAATTGTAGC-CATGTTTTTCATCGTGATTGTATTGACCGGTGG 357
Query 386 CTAGATTATGAATGTTGCGGCGGTGATGATGATAACCACCGTACTTGTCCCCTATGTCGA 445
||||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 358 CTAGATTATGAATGTCGCGGTGGCGATGAGGATAACCACCGTACTTGTCCGCTATGTCGA 417
Query 446 ACGCCGTTGCTTCCATCTTTCACTGATTACTCAACCGTTACTCAAACTAGTTGGGCTGTT 505
|| ||||||||||| || ||| |||||| ||| ||||||| |||| |||| ||||| |||
Sbjct 418 ACACCGTTGCTTCCGTCGTTCTCTGATTGCTCCACCGTTAATCAACCTAGCTGGGCCGTT 477
Query 506 GAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGACttttattttt 558
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 GAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGAATTTTATTTTT 530
Score = 126 bits (68), Expect = 2e-28
Identities = 80/86 (93%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 611 GAGGGGTCGAATAGGAAATATAAGAGTGATTGATCGCAATTATACGAAATCGAATCAATT 670
|||| || ||||||||||||||||| ||||||||| ||||||||||||| |||| |||||
Sbjct 531 GAGGAGTAGAATAGGAAATATAAGAATGATTGATCTCAATTATACGAAAACGAACCAATT 590
Query 671 TGATTTGATTGTATATACAAATGTTA 696
||||||||||||||||||||||||||
Sbjct 591 TGATTTGATTGTATATACAAATGTTA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5