BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43440.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936941 jgi|Araly1|936941|scaffold_501132.1 606 9e-173
> Ahg936941 jgi|Araly1|936941|scaffold_501132.1
Length=755
Score = 606 bits (328), Expect = 9e-173
Identities = 516/601 (86%), Gaps = 35/601 (6%)
Strand=Plus/Plus
Query 236 TAGAGTCTTCAATGGTGTCCCTGCACAAAAGGTTCAAGAAATCATTCGCATCGCTTTTGC 295
|||| | ||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 168 TAGAATGTTCGATGGTGTTCCTGCACAAAAGGTTCAAGAAATCATTCGCATCGCTGCTGC 227
Query 296 TGGTAAACAGACGAAGAATGTGACCGGTATCAATCCAGCACTGAACAGAGCTCTTTC-TT 354
|| |||| ||| ||||||||||| |||||||||||||| |||||||||||| |||| ||
Sbjct 228 TGCTAAAGAGATAAAGAATGTGACTGGTATCAATCCAGCGCTGAACAGAGCTGTTTCTTT 287
Query 355 -T------C-TCAACTGTAGCTGATCTTCCAATTGCTAGGAGACGTTCGCTTCAAAGATT 406
| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 288 CTCAGGCACATCAACTGTAGCTGATCTTCCGATTGCTAGGAGACGTTCGCTTCAAAGATT 347
Query 407 TCTCGAGAAGAGACGGGACAGGTCCACGAAGCCAGATGGTTCAATGATCCTTCCAAGTCA 466
||| ||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 348 TCTTGAGAAAAGACGGGACAGGTCCACAAAGCCAGATGCTTCAACAATCCTTCCAAGTCA 407
Query 467 ACTAACCATTATTTTTGGTGGGAGTTTTAGCGTATTTGATGGTATTCCAGCTGAAAAGGT 526
||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 408 ACTTACTATTATCTTTGGTGGGAGTTTTAGCGTATTTGATGGAATTCCAGCTGAAAAGGT 467
Query 527 TCAAGAAATTCTGCATATCGCTGCTGCAGCTAAAGCCACTGAGACAATTAATTTGACCAG 586
||||||||| ||| ||| |||||||| ||||||||||||||||||| |||||||||||
Sbjct 468 TCAAGAAATCCTGTGTATTGCTGCTGCTGCTAAAGCCACTGAGACAAAGAATTTGACCAG 527
Query 587 TATAAATCCAGCATTAAAGAGAGCTATTTCATTCTCAAACGCATCAACAGTAGCTTG-C- 644
||| ||||||||||| ||||||||| |||| ||||||| | ||||||||||| ||| |
Sbjct 528 TATCAATCCAGCATTGAAGAGAGCTCTTTCTTTCTCAAGCACATCAACAGTACCTTTACC 587
Query 645 -G----T-A--T--CGACAGCAGATGTGCCAATTGCTAGGAGACGTTCACTTCAAAGATT 694
| | | | ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 588 AGGGGCTTACATATCGACAGCTGATGTGCCAATTGCTAGGAGACGTTCGCTTCAAAGATT 647
Query 695 TTTTGAGAAAAGACGGCATC-GATTTGTCCACACGAAGCCTTACTCTGCTACGACTTCGG 753
| |||||||||||||| | | |||||||||| ||||| |||||||||||||| || |||
Sbjct 648 TCTTGAGAAAAGACGGGA-CAGATTTGTCCATACGAACCCTTACTCTGCTACAACCTCGA 706
Query 754 AAGCAGACAAAAATGAAACCAGCCCCATTGTGACATGAGCTCCAAGACTGTAAGCTAACC 813
||||||| |||| | || || ||||||||||||||||| |||||||||||||
Sbjct 707 AAGCAGA-------GAAA--A-CC--ATGGTGACATGAGCTCCAAGGCTGTAAGCTAACC 754
Query 814 T 814
|
Sbjct 755 T 755
Score = 128 bits (69), Expect = 8e-29
Identities = 138/170 (81%), Gaps = 9/170 (5%)
Strand=Plus/Plus
Query 199 CTT-CAACTCAACTTACTATTATCTTTGGTGGGAGTTGTAGAGTCTTCAATGGTGTCCCT 257
||| ||| ||||||||||||||||||||||||||||| ||| || || |||| | ||
Sbjct 397 CTTCCAAGTCAACTTACTATTATCTTTGGTGGGAGTTTTAGCGTATTTGATGGAATTCCA 456
Query 258 GCACAAAAGGTTCAAGAAATCAT-TCGCATCGCTTTTGCTGGTAAA-C-A--GA--CGAA 310
|| ||||||||||||||||| | | | || ||| ||||| |||| | | || | ||
Sbjct 457 GCTGAAAAGGTTCAAGAAATCCTGT-GTATTGCTGCTGCTGCTAAAGCCACTGAGACAAA 515
Query 311 GAATGTGACCGGTATCAATCCAGCACTGAACAGAGCTCTTTCTTTCTCAA 360
|||| ||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 516 GAATTTGACCAGTATCAATCCAGCATTGAAGAGAGCTCTTTCTTTCTCAA 565
Score = 95.3 bits (51), Expect = 8e-19
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 365 AGCTGATCTTCCAATTGCTAGGAGACGTTCGCTTCAAAGATTTCTCGAGAAGAGACGGGA 424
||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 606 AGCTGATGTGCCAATTGCTAGGAGACGTTCGCTTCAAAGATTTCTTGAGAAAAGACGGGA 665
Query 425 CAG 427
|||
Sbjct 666 CAG 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5