BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G43505.1 Length=231 Score E Sequences producing significant alignments: (Bits) Value Ahg897094 jgi|Araly1|897094|Al_scaffold_0005_1060 307 2e-83 > Ahg897094 jgi|Araly1|897094|Al_scaffold_0005_1060 Length=231 Score = 307 bits (166), Expect = 2e-83 Identities = 204/223 (91%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 1 ATGTCTAAAACCACCGTTATTGCTATTTTCATGGTTGTCCTCGTTTTAGGGCTTGTGACA 60 ||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| Sbjct 1 ATGTCTAAAACCACCGTTATTGCTATTTTCATGATCGTCCTCGTTCTAGGGCTGGTGACA 60 Query 61 AAAGAGACGCAAGGACAAGAATTGTGTCACGACTATATGTCAGGAACAGAACTATGTGAA 120 || |||||||||||||||||||||||||| |||||||||| |||| |||||| ||||||| Sbjct 61 AAGGAGACGCAAGGACAAGAATTGTGTCATGACTATATGTTAGGAGCAGAACCATGTGAA 120 Query 121 GAAGACAAGTGTGTAGCTAAGTGTATTTGGATGCACGGGACAGCTGCAAAAGGCACATGT 180 |||||||||||||| |||||||||||||||| ||| || |||| || ||||||| | ||| Sbjct 121 GAAGACAAGTGTGTCGCTAAGTGTATTTGGAGGCATGGCACAGGTGGAAAAGGCTCGTGT 180 Query 181 ATGCCAAAGCCAAGCAAGCAATGCGTCTGCACTTATAGTTGCA 223 |||||||||||||||||||||||| |||| ||||||||||||| Sbjct 181 ATGCCAAAGCCAAGCAAGCAATGCCTCTGTACTTATAGTTGCA 223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7943158288 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5