BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G43505.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897094 jgi|Araly1|897094|Al_scaffold_0005_1060                    307    2e-83


> Ahg897094 jgi|Araly1|897094|Al_scaffold_0005_1060
Length=231

 Score =  307 bits (166),  Expect = 2e-83
 Identities = 204/223 (91%), Gaps = 0/223 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTAAAACCACCGTTATTGCTATTTTCATGGTTGTCCTCGTTTTAGGGCTTGTGACA  60
            ||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||
Sbjct  1    ATGTCTAAAACCACCGTTATTGCTATTTTCATGATCGTCCTCGTTCTAGGGCTGGTGACA  60

Query  61   AAAGAGACGCAAGGACAAGAATTGTGTCACGACTATATGTCAGGAACAGAACTATGTGAA  120
            || |||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||
Sbjct  61   AAGGAGACGCAAGGACAAGAATTGTGTCATGACTATATGTTAGGAGCAGAACCATGTGAA  120

Query  121  GAAGACAAGTGTGTAGCTAAGTGTATTTGGATGCACGGGACAGCTGCAAAAGGCACATGT  180
            |||||||||||||| |||||||||||||||| ||| || |||| || ||||||| | |||
Sbjct  121  GAAGACAAGTGTGTCGCTAAGTGTATTTGGAGGCATGGCACAGGTGGAAAAGGCTCGTGT  180

Query  181  ATGCCAAAGCCAAGCAAGCAATGCGTCTGCACTTATAGTTGCA  223
            |||||||||||||||||||||||| |||| |||||||||||||
Sbjct  181  ATGCCAAAGCCAAGCAAGCAATGCCTCTGTACTTATAGTTGCA  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5