BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43520.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484801 jgi|Araly1|484801|fgenesh2_kg.5__793__AT3G43520.1 1415 0.0
> Ahg484801 jgi|Araly1|484801|fgenesh2_kg.5__793__AT3G43520.1
Length=986
Score = 1415 bits (766), Expect = 0.0
Identities = 934/1009 (93%), Gaps = 36/1009 (4%)
Strand=Plus/Plus
Query 2 AAAATCAATCAATCACTAAAATTAGTCGTTAAACAAAAAGCTTGCGAAGAAGAAGACGAA 61
|||||||||||||||||||||||||||||||||| ||||||||| |||| | | |||
Sbjct 1 AAAATCAATCAATCACTAAAATTAGTCGTTAAAC--AAAGCTTGC---GAAG-A-A-GAA 52
Query 62 GAAAATGGCGGATTTGATTTTGAGTTCCTCCTCTGCACAATCCTCTCTCCTTCACGTCAG 121
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 53 GAAAATGGCGGATTTGATTATGAG-T--TCCTCTGCACAATCCTCTCTCCTTCACGTCAG 109
Query 122 ACCTAATCACTAT-CTACTCAATACCTCCACTGCTTCACCGATCCGAAGTGTCAGATTCC 180
||| |||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 ACCCAATCTCT-TCCTACTCAATACCTCCACTGCTTCACCGATCCGAAGTGTCAGATTCC 168
Query 181 AAAATTCCAACGGTTTTCATCCTCTGGCGTTCGCATCTGGTCACCGACGACTTCCTCTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 AAAATTCCAACGGTTTTCATCCTCTGGCGTTCGCATCTGGTCACCGACGACTTCCTCTCG 228
Query 241 GTGCAGTAGTTCCCTCTGACTCCACTAAGACGATCACCAGTACGATTACTGCTAACTGCG 300
||||||| ||||||||||| || ||||||||||||||| |||| ||||||||||| || |
Sbjct 229 GTGCAGTTGTTCCCTCTGATTCGACTAAGACGATCACCGGTACTATTACTGCTAATTGTG 288
Query 301 TTGATTCGGGAGTCAAAGCTGTTGAAGTCGAGCCTACGATCGATTACGGA------GGTG 354
||||||| || || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 289 TTGATTCAGGTGTAAAAGCTGTTGAAGTCGAGCCTACGATCGATTACGGAGGTGGTGGTG 348
Query 355 GTGGTGGAATTGGAGGTGATAAATTTGGCGGCGGTGGTGGAGGCGGCGATGGAAATGACG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTGGTGGAATTGGAGGTGATAAATTTGGCGGCGGTGGTGGAGGCGGCGATGGAAATGACG 408
Query 415 ACGGAGGGGAAGACGATAAGGAGGAGAGTGACGGGAAGAAGAG-CACGCCTCTGTCTATG 473
|||||| || | |||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 409 ACGGAGAAGATGGTGATAAGGAAGAGAGTGACGGGAAAAA-AGGCACGCCTCTGTCTATG 467
Query 474 TCGCAGAAGTTGACTCTTGGTTACGCTTTTCTCGTCGGAGTTGGTGGGCTGATGGGTTAT 533
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 468 TCGCAGAAATTGACTCTTGGTTACGCTTTTCTCGTTGGAGTTGGTGGGCTGATGGGTTAT 527
Query 534 CTGAAGAGCGGTAGCCAGAAATCGTTGCTTGCAGGTGGACTGTCAGCTGCTGTTCTGCTG 593
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 528 CTGAAGAGCGGTAGCCAGAAATCGCTGCTTGCAGGTGGACTGTCAGCTGCTGTTCTGCTG 587
Query 594 TATGTCTTCAGTCAGCTCCCAACAAAACCTGTTCTTGCATCAACCGTTGGTGTAGTGATG 653
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 588 TATGTCTTCAGCCAGCTCCCAACAAAACCTGTTCTTGCATCAACCGTTGGCGTAGTGATG 647
Query 654 GCGGGTGCGTTAATGTACGTAATGGGAACCCGATACATGCGTTCGAAGAAGATATTTCCT 713
|||||||| |||| |||||| ||||||||||| |||||| | ||||||||||||||||||
Sbjct 648 GCGGGTGCATTAACGTACGTGATGGGAACCCGGTACATGGGATCGAAGAAGATATTTCCT 707
Query 714 GCTGGAGTTGTGTCGATCATGTCTTTCATTATGACCGGAGGATACATACACGGTATCATG 773
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GCTGGAGTCGTGTCGATCATGTCTTTCATTATGACCGGAGGATACATACACGGTATCATG 767
Query 774 CGCAGCCTCCACTAAGCAGTAGCAAACACTCTCGAGTCTGTTACAAAAGTGTCTTGTCTC 833
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 768 CGTAGCCTTCACTAAGCAGCAGCAAACACTCTCGAGTCTGTTACAAAAGTGTCT-GTCTC 826
Query 834 TGACCTTTTTCTTTCTTTATGTGTGTGTTTCACGGTGTATAAAGCAGCTTTGCTACTTTG 893
|||||||||||||||||| |||||| || ||||||||| || ||||||| |||||||||
Sbjct 827 TGACCTTTTTCTTTCTTT--GTGTGT-TT-CACGGTGTA-AA-GCAGCTTCGCTACTTTG 880
Query 894 T-TTT-GTCTGAACCATAAGAAAACTAGCACCAAAACGTTCTAAAG--G-ACTTTATGGA 948
| ||| || |||||||||||||||||| | | ||||||||| | || | ||||||||||
Sbjct 881 TGTTTTGTATGAACCATAAGAAAACTA-C-C-AAAACGTTCCAGAGAAGTACTTTATGGA 937
Query 949 TTTAGCTCTGTGGTCAGAATCTAAAAACTCAAATTATTCCCGAAAATCT 997
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TTTAGCTCTGTGGTCAGAATCTAAAAACTCAAATTATTCCCGAAAATCT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5