BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43540.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484802 jgi|Araly1|484802|fgenesh2_kg.5__794__AT3G43540.1 1849 0.0
> Ahg484802 jgi|Araly1|484802|fgenesh2_kg.5__794__AT3G43540.1
Length=1269
Score = 1849 bits (1001), Expect = 0.0
Identities = 1137/1203 (95%), Gaps = 7/1203 (1%)
Strand=Plus/Plus
Query 24 TCTGACTAAACGTTTGCTTCTTCTTCTTCACACAAAACTGTAGGGAAGAAAAGGAATAAT 83
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1 TCTGACTTAACGTTTGCTTCTTCTTCTTCACACAAAACTGTACGGAAGAAAAAGAATAAT 60
Query 84 GGAGTTTGGATTAGCCACTTCGAGTTTTCTGGGTACTCAACTAATCCCGGCCACTCTG-T 142
|||||||| ||||||||||||||||||||||||||| ||| | || ||||| |||||| |
Sbjct 61 GGAGTTTGCATTAGCCACTTCGAGTTTTCTGGGTACGCAAGTGATTCCGGCGACTCTGAT 120
Query 143 TTAGCAAACGAGCTCGAGCTTTGTCTCTCACCGTCACAGCGACCGGTGGCAGCAGAAACA 202
|| ||| ||||||||||||| | |||||||||||||| |||| |||| || ||||||
Sbjct 121 TT-GCAGACGAGCTCGAGCTGTCTCTCTCACCGTCACTGCGA---GTGGAAGTAGAAACG 176
Query 203 ATAAGGTTTACACGAGGCTTGATTCTTGTCTAGTGATTCCTCCTCCTCCTAAATTCAAGA 262
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 ATAAGATTTACACGAGGCTTGATTCTTGTCTAGTGATTCCTCCTCCTCCTAGATTCAAGA 236
Query 263 AACCGCGTGCTATTGTTAAATTCTTGGGAGGTGCCTTCGTCGGAGCTGTTCCTGAACTCA 322
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 237 AACCGCGTGCTATTGTTAAGTTCTTGGGAGGTGCCTTCGTCGGAGCTGTACCTGAACTCA 296
Query 323 CTTACAGTTACCTTAAGGAGCTACTGGCAAAGGAAGGGTATTTGATAGTATCTGTGCCGT 382
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 297 CTTACAGTTACCTCAAGGAGCTACTGGCAAAGGAAGGGTATTTAATAGTATCAGTGCCGT 356
Query 383 ACAATGTTACATTTGATCATGAACAAGCTGCTAAGCAAGTTTATGAGAGGTTTAATTCAT 442
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 357 ACAATGTTACATTTGATCATGAACAAGCTGCTAAGCAGGTTTATGAGAGGTTTAATTCTT 416
Query 443 GCTTGGACACGATTGTCTCATCTGGAATTCCAAATTCAAACTTGAAGCCTGGAGATTTAG 502
|||||||||||||| |||||||||||||||||| | |||| |||||||||| |||| |||
Sbjct 417 GCTTGGACACGATTATCTCATCTGGAATTCCAACTGCAAATTTGAAGCCTGAAGATCTAG 476
Query 503 CTGACCTTCCTCTTTTCTCAGTTGGTCACAGTAATGGTGCACTGCTCCAAGTTTTGACCG 562
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 477 CTGACCTTCCTCTTTTCTCAGTTGGTCACAGTAATGGTGCGCTGCTCCAAGTTTTGACCG 536
Query 563 GAAGTTATTTTGCTGAGAAGATACCAAAGGTTAATGCCATTATTTCATTCAATAACAAAT 622
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 537 GAAGTTATTTTGCTGAGAAGATACCAAAGGTTAACGCCATCATTTCATTCAACAACAAAT 596
Query 623 CAGCGACAGAGGCGGTTCCATATTTTGAGCAGCTTGGTCCTCTCATCCAGCAGATGCTGC 682
||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 597 CAGCGACAGAGGCAGTTCCATATTTTGAGCAGCTTGGCCCTCTTATTCAGCAGATGCTGC 656
Query 683 CAATGGTGGAAGCTTCTCCAGTATATGAAATGGCTCGAAATGCTTCAGGTGATGTTTTGA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAATGGTGGAAGCTTCTCCAGTATATGAAATGGCTCGAAATGCTTCAGGTGATGTTTTGA 716
Query 743 AACTCTTACTTGACACAGCTGGGACAACGATTCTAAACAACGATCAAGAAGCTCTTAAGT 802
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 AACTCTTACTTGACACAGCTGGGACAACGATTCTAAATAACGATCAAGAAGCTCTTAAGT 776
Query 803 CATTTACTAAATTGGTGGATCAATTGCCATCAGTATTTGGTGAGGTAGGACAAGGAGTGT 862
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 777 CATTTACTAAATTGGTGGATCAATTGCCCTCAGTGTTTGGTGAGGTAGGACAAGGAGTGT 836
Query 863 CAGAATTCAGACCGTCACCACTTGAGAATCGCAATTGCTTCAAGTGCTCCTACAGCGTTC 922
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 CGGAATTCAGACCGTCACCACTTGAGAATCGCAATTGCTTCAAGTGCTCCTACAGCATTC 896
Query 923 CACACACTCTACTGGTACAATTCAACTCCGATGCAATCGACGAGACTGATTTGCTCGAAG 982
|||||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 897 CACACACTTTACTGGTACAATTCAACTCTGATGCAATCGACGAAACCGATTTGCTCGAAG 956
Query 983 AAACTCTTAGGCCTCGGATAGAATCTATTGGTGGTACACTTGAAAAGGTTCGGCTGAACG 1042
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 AAACCCTTAGGCCTCGGATAGAATCTATTGGTGGTACACTTGAAAAGGTTCGGCTGAATG 1016
Query 1043 GAAACCATCTTACACCTTGCATACAGGATCCAAAGTGGCAAATTGGGACTGTGTACACGC 1102
|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 1017 GAAACCATCTCACACCTTGCATACAGGACCCAAAGTGGCAAATTGGGTCTGTGTACACAC 1076
Query 1103 CAGCAGACGCTGTGGCTCAGGCGCTAAAGACCATTCCTCTTAGCGAAACTCGAGTTCTTT 1162
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 CAGCAGATGCTGTGGCTCAGGCGCTAAAGACTATTCCTCTTAGCGAAACTCGAGTTCTTT 1136
Query 1163 CCAGGACGATCGTTGACTGGTTTAGACGGTTTGAGAATTGAGC-TGTCTCATGTAATGTT 1221
||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| ||||
Sbjct 1137 CCAGGACGATCGTTGACTGGTTTAGACGGTTTGAGGATT-AGCCTATCTCATGTATTGTT 1195
Query 1222 GAA 1224
|||
Sbjct 1196 GAA 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5