BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G43580.1

Length=1464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932598 jgi|Araly1|932598|scaffold_400586.1                        134    2e-30
  Ahg351421 jgi|Araly1|351421|fgenesh1_pg.C_scaffold_6002014           134    2e-30
  Ahg323654 jgi|Araly1|323654|fgenesh1_pm.C_scaffold_5001198          80.5    3e-14
  Ahg947373 jgi|Araly1|947373|scaffold_703602.1                       63.9    3e-09
  Ahg328776 jgi|Araly1|328776|fgenesh1_pm.C_scaffold_7001003          60.2    4e-08


> Ahg932598 jgi|Araly1|932598|scaffold_400586.1
Length=788

 Score =  134 bits (72),  Expect = 2e-30
 Identities = 96/108 (89%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  308  TTCGTGCATGACAAGAGCTCCACCTCCCCATGCGCATCATTTGGATCCCCCATGGCTCAG  367
            ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  83   TTCGTCCATGGCAAGAGCTCCACCTCCCCATGCGCATCATTTGGATCCTCCATGGCTTAG  142

Query  368  TCCCAAGCTATTGGTTTGTTTCTGGTGGCTGGAAATCCTTGAACCGTC  415
            | || |||||| |||||| ||||||||||||||   ||||| ||||||
Sbjct  143  TTCCGAGCTATCGGTTTGCTTCTGGTGGCTGGAGGCCCTTGGACCGTC  190


> Ahg351421 jgi|Araly1|351421|fgenesh1_pg.C_scaffold_6002014
Length=1035

 Score =  134 bits (72),  Expect = 2e-30
 Identities = 96/108 (89%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  308  TTCGTGCATGACAAGAGCTCCACCTCCCCATGCGCATCATTTGGATCCCCCATGGCTCAG  367
            ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  63   TTCGTCCATGGCAAGAGCTCCACCTCCCCATGCGCATCATTTGGATCCTCCATGGCTTAG  122

Query  368  TCCCAAGCTATTGGTTTGTTTCTGGTGGCTGGAAATCCTTGAACCGTC  415
            | || |||||| |||||| ||||||||||||||   ||||| ||||||
Sbjct  123  TTCCGAGCTATCGGTTTGCTTCTGGTGGCTGGAGGCCCTTGGACCGTC  170


> Ahg323654 jgi|Araly1|323654|fgenesh1_pm.C_scaffold_5001198
Length=840

 Score = 80.5 bits (43),  Expect = 3e-14
 Identities = 55/61 (90%), Gaps = 0/61 (0%)
 Strand=Plus/Plus

Query  895  TTGAAGAAGAACGACATTATCATCCCATTTCTAAGGAGCGGTGATTACCGAAGCTTCTTC  954
            ||||||||||||| |||||| |||||   || ||||||||||||||||||||||||||||
Sbjct  76   TTGAAGAAGAACGGCATTATGATCCCGCATCCAAGGAGCGGTGATTACCGAAGCTTCTTC  135

Query  955  A  955
            |
Sbjct  136  A  136


> Ahg947373 jgi|Araly1|947373|scaffold_703602.1
Length=480

 Score = 63.9 bits (34),  Expect = 3e-09
 Identities = 46/52 (88%), Gaps = 0/52 (0%)
 Strand=Plus/Plus

Query  904  AACGACATTATCATCCCATTTCTAAGGAGCGGTGATTACCGAAGCTTCTTCA  955
            |||| |||||| |||||   || |||||||||||||||||||||||||||||
Sbjct  12   AACGGCATTATGATCCCGCATCCAAGGAGCGGTGATTACCGAAGCTTCTTCA  63


> Ahg328776 jgi|Araly1|328776|fgenesh1_pm.C_scaffold_7001003
Length=801

 Score = 60.2 bits (32),  Expect = 4e-08
 Identities = 32/32 (100%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  924  TCTAAGGAGCGGTGATTACCGAAGCTTCTTCA  955
            ||||||||||||||||||||||||||||||||
Sbjct  12   TCTAAGGAGCGGTGATTACCGAAGCTTCTTCA  43



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54773772310


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5