BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43590.1
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323091 jgi|Araly1|323091|fgenesh1_pm.C_scaffold_5000635 2444 0.0
Ahg891237 jgi|Araly1|891237|Al_scaffold_0007_3223 274 2e-72
> Ahg323091 jgi|Araly1|323091|fgenesh1_pm.C_scaffold_5000635
Length=1671
Score = 2444 bits (1323), Expect = 0.0
Identities = 1570/1683 (93%), Gaps = 41/1683 (2%)
Strand=Plus/Plus
Query 133 ATGCCGAGGCAGAATAAAGATGAAAAATTTGTTTTTGATGACGGAGAAGACGAAGACAGA 192
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCCGAGGCATAATAAAGATGAAAAATTTGTTTTTGATGACGGAGAAGACGAGGACAGA 60
Query 193 GAAGATCCAGTAGCCATTACAGAAGTCGA----CAACGGCGAAGAAGAAGATGATGATGA 248
|||||||||||| |||||| || ||||| || | ||||| ||||||||||||||
Sbjct 61 GAAGATCCAGTATCCATTAAAGTTGTCGATGGTGAA-GATGAAGATGAAGATGATGATGA 119
Query 249 AGCTAATGAAGATCTAAGCTTGAAGATTTTAGAGAAAGCATTATCGAGGCGTGATGTTGG 308
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 AGCTAATGAAGATCTTAGCTTGAAGATATTAGAGAAAGCATTATCGAGGCGTGATGTTGG 179
Query 309 GAACAAGCTTGATTCTGATCTCTCCTCCGATTCTGGTGTAGTTAGTACTGTGATGGTTAA 368
||||||||||||||||||||||| || |||||||||||||| | |||||||||||||||
Sbjct 180 GAACAAGCTTGATTCTGATCTCT-CT--GATTCTGGTGTAGTAAATACTGTGATGGTTAA 236
Query 369 TGGAGTAAAGTCTAAGGTTAAAAAGTCTGAGAGTAGTAAGAAGATGAAGAGAAATAAGCT 428
||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 237 TGGAGGAAAGTCTAAGGTTAAAAAATATGAGAGTAATAAGAAGATGAAGAGAAATAAGCT 296
Query 429 TGAAGCTGACCATGAAATTCCTATTGTTTGGAATGACCAAGATGAAGAGAAAGTGGTGGA 488
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 297 TGAAGCTGCCCATGAAATTCCTATTGTTTGGAAAGACCAAGATGAAGAGAAAGTTGTGGA 356
Query 489 GGAGATAGTAAAAGGTGAAGGAGAGGATGATGAGGTTGAGAGATCTGATGAACCAAAAAC 548
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 357 GGAGGTAGTAAAAGGTGAAGGAGAGGATGATGAGGTTGACAGATCTGATGAACCGAAAAC 416
Query 549 TGAAGAAACAGCTAGCAATTTGGTTCTGAAAAAGCTTCTTCGTGGAGCAAGATACTTTGA 608
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGAAGAAACATCTAGCAATTTGGTTCTGAAAAAGCTTCTTCGTGGAGCAAGATACTTTGA 476
Query 609 CCCTCCTGATGCTGGTTGGGTGAGTTGTTATAGTTGTGGGGAGCAAGGTCATACAAGTTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCCTCCTGATGCTGGTTGGGTGAGTTGTTATAGTTGTGGGGAGCAAGGTCATACAAGTTT 536
Query 669 CAATTGTCCAACTCCTACTAAGCGTAGAAAGCCTTGCTTTATATGTGGGAGTTTGGAACA 728
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAATTGTCCAACTCCTACCAAGCGTAGAAAGCCTTGCTTTATATGTGGGAGTTTGGAACA 596
Query 729 TGGTGCAAAGCAGTGTTCAAAGGGACATGATTGTTATATATGCaaaaaaaCTGGACATCG 788
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 TGGTGCAAAGCAGTGTTCAAAGGGACATGATTGTTATATATGCAAAAAAGGTGGACATCG 656
Query 789 AGCTAAAGATTGTCCGGATAAGTACAAAAACGGGTCTAAAGGAGCTGTATGTTTAAGATG 848
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 AGCTAAAGATTGTCCCGATAAGTATAAAAACGGGTCTAAAGGAGCTGTATGTTTAAGATG 716
Query 849 TGGAGACTTTGGACATGACATGATTTTGTGCAAGTATGAGTACTCTAAGGAAGATTTGAA 908
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 TGGAGACTTTGGTCATGACATGATTTTGTGCAAGTATGAGTACTCTCAGGAAGATTTGAA 776
Query 909 GGATGTACAATGCTATATCTGTAAAAGCTTTGGCCATCTATGCTGTGTTGAACCTGGTAA 968
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 GGATATACAATGCTATGTCTGTAAAAGCTTTGGCCATCTATGCTGTGTCGAACCTGGTAA 836
Query 969 TTCACTGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGGTCATAGTGGACTGGC 1028
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 TTCACCGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGGTCATACTGGACTGGC 896
Query 1029 ATGTGGTAGACACTATGAAGAAAGCAACGAAAATGATTCTGCCA-CTCCAGAAAGGCTTT 1087
||||||||||||||| |||||||| ||||||||||||||| ||| || | | | ||||
Sbjct 897 ATGTGGTAGACACTACGAAGAAAGAAACGAAAATGATTCTTCCAGCTT-A-A--G-CTTT 951
Query 1088 TTA-A---CAGTAGGGAAGCCAGTGAATGCTATAGGTGTGGGGAAGAAGGGCATTTCGCA 1143
| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CCAGAAAACAACAGGGAAGCCAGTGAATGCTATAGGTGTGGGGAAGAAGGGCATTTCGCA 1011
Query 1144 CGTGAATGTCCGAATTCGTCGAGCATAAGCACTTCACATGGCAGAGAGTCACAAACTTTA 1203
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1012 CGTGAATGCCCGAATTCGTCGAGCATAAGCACTTCACAGGGCAGAGAGTCACAAAGTTTA 1071
Query 1204 TGCTACAGATGTAATGGATCAGGACATTTCGCTCGTGAATGCCCCAATTCCTCCCAGGTT 1263
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGCTACAGATGTAATGGAGCAGGACATTTCGCTCGTGAATGCCCCAATTCCTCCCAGGTT 1131
Query 1264 TCTAAGAGAGACCGTGAAACATCTACAACATCACATAAATCTCGCAAGAAAAACAAAGAG 1323
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1132 TCTAAGAGGGACCGTGATACATCTACACCATCACATAAATCTCGCAAGAAAAATAAAGAG 1191
Query 1324 AACTCAGAACACGATTCTACTCCCCATGAGTCCAATGgaaagacaaagaagaagaagaag 1383
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1192 AACTCGGAACACGATTCTACTCCCCATGAATCCAATGGAAAGAC---GAAGAAGAAGAAG 1248
Query 1384 aagaaaacacataaagaagaaCAGCCCCAGACTTCACCAAGGAAACGAAAACACAGAGGC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AAGAAAACACATAAAGAAGAACAGCCCCAGACTTCACCAAGGAAACGAAAACACAGAGGC 1308
Query 1444 GGTTGGATCACAGAGGAACCGGAAGAAGAATCTTTCCAAAGAGGAAAGATGAGAAGGCCA 1503
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1309 GGTTGGATCACAGAGGAACCGGAAGAAGAATCTTTCCAAAGAGGAAAGACGAGAAGGCCA 1368
Query 1504 AAGTCTCCCATTACACCATCGGGTTATAACAGGTCACCCTCTACACATATTGGTCATAAC 1563
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1369 AAGTCTCCCATTACACCATCGGGTTATAACAAGTCACCCTCTACACATATGGGTCATAAC 1428
Query 1564 TATAGATCGCCAAAATTCAATTCTGGTGGGCATTACCCGGGTTCTCAGTCTAGTAGGCAT 1623
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1429 TATAGATCTCCAAAATTCAATTCTGGTGGGCATTTCCCGGGATCTCAGTCTAGTAGGCAT 1488
Query 1624 CACTCGGGTCCTTCACCTTCAAGGTGGCAGCCTTCtcatc---------agcatcatca- 1673
||||||||||||||||| |||||||||||||||||| ||| | ||||||||
Sbjct 1489 CACTCGGGTCCTTCACCATCAAGGTGGCAGCCTTCTTATCCTCCTTCTCATCATCATCAG 1548
Query 1674 --tcatcatcagcatc-t--tca---tcatcatcatcagaatcaCAGTTATG-AACCTGC 1724
||||||||| |||| | ||| |||||||||||||||||| ||||||| ||| |||
Sbjct 1549 CATCATCATCATCATCATCATCAGCATCATCATCATCAGAATCAAAGTTATGGAAC-TGC 1607
Query 1725 ACCACCAAGGCATGGAAGAGCTAACCGCTATAGTGAGTTTGCAGGGAACTATGAACGGTG 1784
|||||||||| |||| |||||| ||| |||| | ||||||||||||||||||||||||||
Sbjct 1608 ACCACCAAGGTATGGCAGAGCTCACCACTATGGCGAGTTTGCAGGGAACTATGAACGGTG 1667
Query 1785 GTA 1787
|||
Sbjct 1668 GTA 1670
> Ahg891237 jgi|Araly1|891237|Al_scaffold_0007_3223
Length=531
Score = 274 bits (148), Expect = 2e-72
Identities = 184/201 (92%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 835 GTATGTTTAAGATGTGGAGACTTTGGACATGACATGATTTTGTGCAAGTATGAGTACTCT 894
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 31 GTATGTTTAAGATGTGGAGAATTTGGACATGACATGACTTTGTGCAAGTATGAGTACTCT 90
Query 895 AAGGAAGATTTGAAGGATGTAC-AATGCTATATCTGTAAAAGCTTTGGCCATCTATGCTG 953
||||||||||||||||| | | |||||||| ||||||||||||| |||||| |||| ||
Sbjct 91 CAGGAAGATTTGAAGGATAT-CAAATGCTATGTCTGTAAAAGCTTAGGCCATTTATGTTG 149
Query 954 TGTTGAACCTGGTAATTCACTGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGG 1013
| |||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 150 TATTGAACCTAGTCATTCACCGTCATGGACTGTATCTTGCTACAGATGTGGTCAACTGGG 209
Query 1014 TCATAGTGGACTGGCAT-GTG 1033
||||| ||||||||||| |||
Sbjct 210 TCATACTGGACTGGCATCGTG 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79265799845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5