BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43630.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484806 jgi|Araly1|484806|fgenesh2_kg.5__798__AT3G43630.1 946 0.0
Ahg484807 jgi|Araly1|484807|fgenesh2_kg.5__799__AT3G43660.1 719 0.0
Ahg897075 jgi|Araly1|897075|Al_scaffold_0005_1041 119 3e-26
> Ahg484806 jgi|Araly1|484806|fgenesh2_kg.5__798__AT3G43630.1
Length=602
Score = 946 bits (512), Expect = 0.0
Identities = 573/603 (95%), Gaps = 2/603 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCTCACAACACCTTGAACCTAGACATGGA-GAAAGATCAAGAAAAGGCTTTTGA 59
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 ATGGCATCTCACAACACCTTGAACCTAGACATGGAGGAAA-ATCAAGAAAAGGCTTTTGA 59
Query 60 CTACTCCAAACGAGCTCAATGGCTAAGAGCCGCTGTGCTTGGTGCCAACGACGGTCTTGT 119
||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||
Sbjct 60 CTACTCCAAACGAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCGAACGACGGTCTAGT 119
Query 120 CTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAAACGTCAAGATCATGAT 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAGACGTCAAGATCATGAT 179
Query 180 CTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATTGGAGAGTTTGT 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTGT 239
Query 240 CTCTGTTTACTCTCAATATGACATAGAGGTAGCTCagatgaagagagagaccggaggaga 299
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CTCCGTTTACTCTCAGTATGACATAGAGGTGGCTCAGATGAAGAGAGAGACCGGAGGAGA 299
Query 300 gattgagaaagagaAGCTTCCAAGTCCAACACAAGCGGCTGCAGCATCTGCGTTAGCGTT 359
| | ||||||||||| || || || ||||| |||||||||||||||||||||||||||||
Sbjct 300 GGTAGAGAAAGAGAAACTCCCGAGCCCAACCCAAGCGGCTGCAGCATCTGCGTTAGCGTT 359
Query 360 TTCTCTTGGGGCGATGGTGCCGTTATTGGCGGCAGCGTTTGTGAAAGAGTATAAAGTGAG 419
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TTCTCTCGGGGCGATGGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAG 419
Query 420 GATTGGTGCAATAGTGGCAGCGGTTACGTTGGCGTTGGTGATGTTTGGATGGTTAGGGGC 479
|||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GATTGGAGTGATTGTGGCAGCGGTTACGTTGGCGTTAGTGATGTTTGGATGGTTAGGGGC 479
Query 480 GGTTTTGGGGAAAGCACCAGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTT 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTTTTGGGGAAAGCACCGGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTT 539
Query 540 AGCTATGGCCATTACGTATGGTTTTACAAAACTCATTGGGTCACATAGTCATATGTATGT 599
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AGCTATGGCCATTACGTTTGGTTTTACAAAACTCATTGGGTCACATGGTCATATGTATGT 599
Query 600 GTG 602
|||
Sbjct 600 GTG 602
> Ahg484807 jgi|Araly1|484807|fgenesh2_kg.5__799__AT3G43660.1
Length=785
Score = 719 bits (389), Expect = 0.0
Identities = 538/610 (88%), Gaps = 10/610 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCTC-ACAACACCTTGAACCTAGACATGGAGAAAGATCAAGAAAAGGCTTTTGA 59
|||||| | | |||||| |||||||||||||||||||||||||||||| | | |||| ||
Sbjct 98 ATGGAAAC-CAACAACAACTTGAACCTAGACATGGAGAAAGATCAAGATACGACTTTCGA 156
Query 60 CTACTCCAAACGAGCTCAATGGCTAAGAGCCGCTGTGCTTGGTGCCAACGACGGTCTTGT 119
||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||| ||
Sbjct 157 CTACTCCAAACGAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCCAACGATGGTCTAGT 216
Query 120 CTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAAACGTCAAG-ATCATGA 178
||| ||||||||||||||||||||| |||||||||| |||||| ||||| || | ||||
Sbjct 217 CTCAACGGCTTCACTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTC-AGAACCATGC 275
Query 179 TCTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATTGGAGAGTTTG 238
| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 276 TTTTAACCGGTTTTTCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAATTTA 335
Query 239 TCTCTGTTTACTCTCAATATGACATAGAGGTAGCTCagatgaagagagagaccggaggag 298
|||| ||||||||||| || ||||||||||| ||||||||||||||||||| |||||| |
Sbjct 336 TCTCCGTTTACTCTCAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGG 395
Query 299 agattgagaaagagaAGCTTCCAAGTCCAACACAAGCGGCTG-CAGCATCTGCGTTAGCG 357
||| ||||||| ||||||||||| || | | ||||||| | || ||||||||| |
Sbjct 396 AGACAAAGAAAGAAAAGCTTCCAAGCCCGATGCTAGCGGCTATC-GCGTCTGCGTTATCA 454
Query 358 TTTTCTCTTGGGGCGATGGTGCCGTTATTGGCGGCAGCGTTTGTGAAAGAGTATAAAGTG 417
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 455 TTTTCTCTAGGAGCGATTGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTG 514
Query 418 AGGATTGGTGCAATAGTGGCAGCGGTTACGTTGGCGTTGGTGATGTTTGGATGGTTAGGG 477
|||||||| | || ||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 515 AGGATTGGAGGGATTGTGGCGGCAGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGG 574
Query 478 GCGGTTTTGGGGAAAGCACCAGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGG 537
|||||||||||||| ||||| ||||||||||||||||| ||||||||| | |||||||||
Sbjct 575 GCGGTTTTGGGGAAGGCACCGGTGGTTAAGTCGTCGCTAAGGGTTTTGATCGGAGGATGG 634
Query 538 TTAGCTATGGCCATTACGTATGGTTTTACAAAACTCATTGGGTCACATAGTC----ATAT 593
||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||
Sbjct 635 TTAGCTATGGCCATTACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATAT 694
Query 594 GTATGTGTGA 603
||||||||||
Sbjct 695 GTATGTGTGA 704
> Ahg897075 jgi|Araly1|897075|Al_scaffold_0005_1041
Length=360
Score = 119 bits (64), Expect = 3e-26
Identities = 105/125 (84%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 316 CTTCCAAGTCCAACACAAGCGGCTGCAGCA-TCTGCGTTAGCGTTTTCTCTTGGGGCGAT 374
|||| ||| ||||| ||||||||| | | | ||||||||||| ||||||| | | ||
Sbjct 226 CTTCGAAGCCCAACGCAAGCGGCTAC-GGAGTCTGCGTTAGCATTTTCTCCAAGAGAAAT 284
Query 375 GGTGCCGTTATTGGCGGCAGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGTGCAATAGT 434
|||| |||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 285 TGTGCTGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAGCGATTGT 344
Query 435 GGCAG 439
|||||
Sbjct 345 GGCAG 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5