BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43660.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484807 jgi|Araly1|484807|fgenesh2_kg.5__799__AT3G43660.1 1142 0.0
Ahg484806 jgi|Araly1|484806|fgenesh2_kg.5__798__AT3G43630.1 798 0.0
Ahg897075 jgi|Araly1|897075|Al_scaffold_0005_1041 143 2e-33
> Ahg484807 jgi|Araly1|484807|fgenesh2_kg.5__799__AT3G43660.1
Length=785
Score = 1142 bits (618), Expect = 0.0
Identities = 746/804 (93%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 9 CATCCTAGGCGTGTGTTCACCACACTT---C-A-ATTCTCTTCTTTCATTTTCACTAttt 63
|||||||||||||||||| |||||||| | | ||||||| | |||||||||| || ||
Sbjct 1 CATCCTAGGCGTGTGTTCTCCACACTTCACCGATATTCTCTACCTTCATTTTCAGTA-TT 59
Query 64 tttttCTCGTTTAACAAAAGAAACCAAAACCAAAAGGTCCTAACCATGGAATCAAACAAC 123
|||||||||||||||||||| |||||| ||||| |||||||||| | || ||||
Sbjct 60 TTTTTCTCGTTTAACAAAAG------AAACCAGAAGGT-CTAACCATGG-A--AACCAAC 109
Query 124 AACAACTTGAACCTAGACATGGAGAAAGATCAAGAAACGACTTTCGACTACTCCAAACGA 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 110 AACAACTTGAACCTAGACATGGAGAAAGATCAAGATACGACTTTCGACTACTCCAAACGA 169
Query 184 GCTCAATGGCTACGAGCCGCCGTGCTAGGTGCCAACGATGGTCTTGTCTCAACGGCTTCA 243
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 170 GCTCAATGGCTACGAGCCGCCGTGCTCGGTGCCAACGATGGTCTAGTCTCAACGGCTTCA 229
Query 244 CTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTCAGAATCATGCTCTTAACCGGTTTT 303
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 230 CTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTCAGAACCATGCTTTTAACCGGTTTT 289
Query 304 GCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTATCTCCGTTTACTCT 363
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 290 TCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAATTTATCTCCGTTTACTCT 349
Query 364 CAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAAAGAG 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAAAGAA 409
Query 424 AAGCTTCCAAGTCCAACGCAAGCGGCTATCGCGTCTGCATTAGCATTTACTCTAGGAGCG 483
||||||||||| || | || |||||||||||||||||| ||| ||||| |||||||||||
Sbjct 410 AAGCTTCCAAGCCCGATGCTAGCGGCTATCGCGTCTGCGTTATCATTTTCTCTAGGAGCG 469
Query 484 ATTGTGCCGCTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTTAGGATTGGAGTGATT 543
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 470 ATTGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAGGGATT 529
Query 544 GTGGCGGCGGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGGGAAAA 603
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 530 GTGGCGGCAGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGGGGAAG 589
Query 604 GCACCAGTGGTTAAGTCGTTGGTTCGGGTTTTGATTGGAGGATGGTTAGCTATGGCCATT 663
||||| ||||||||||||| | | |||||||||| ||||||||||||||||||||||||
Sbjct 590 GCACCGGTGGTTAAGTCGTCGCTAAGGGTTTTGATCGGAGGATGGTTAGCTATGGCCATT 649
Query 664 ACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATATGTATGTGTGAGTTTA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATATGTATGTGTGAGTTTA 709
Query 724 CTTACGTGACCAAACCCTTCTTCATGTTTCATGCTTCAAAAACTGGaaaaaaaaaTGTAA 783
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 CTTACGTGACCAAACCCTTCTTCATGTTTCATGCTTCAAAAACTGGA--------TGTAA 761
Query 784 TAAGTAGAATTAATTTCTAATGAA 807
|||||||||| |||||||||||||
Sbjct 762 TAAGTAGAATGAATTTCTAATGAA 785
> Ahg484806 jgi|Araly1|484806|fgenesh2_kg.5__798__AT3G43630.1
Length=602
Score = 798 bits (432), Expect = 0.0
Identities = 545/599 (91%), Gaps = 10/599 (2%)
Strand=Plus/Plus
Query 122 ACAACAACTTGAACCTAGACATGGA-GAAAGATCAAGAAACGACTTTCGACTACTCCAAA 180
|||||| |||||||||||||||||| |||| ||||||||| | |||| ||||||||||||
Sbjct 11 ACAACACCTTGAACCTAGACATGGAGGAAA-ATCAAGAAAAGGCTTTTGACTACTCCAAA 69
Query 181 CGAGCTCAATGGCTACGAGCCGCCGTGCTAGGTGCCAACGATGGTCTTGTCTCAACGGCT 240
||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||
Sbjct 70 CGAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCGAACGACGGTCTAGTCTCGACGGCT 129
Query 241 TCACTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTC-AGAATCATGCTCTTAACCGG 299
||||||||||||||| |||||||||| |||||||||||| || |||||| ||||||| ||
Sbjct 130 TCACTTATGATGGGTGTTGGTGCGGTCAAGCAAGACGTCAAG-ATCATGATCTTAACTGG 188
Query 300 TTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTATCTCCGTTTA 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 189 TTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTGTCTCCGTTTA 248
Query 360 CTCTCAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAA 419
||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | ||||
Sbjct 249 CTCTCAGTATGACATAGAGGTGGCTCAGATGAAGAGAGAGACCGGAGGAGAGGTAGAGAA 308
Query 420 AGAGAAGCTTCCAAGTCCAACGCAAGCGGCTATC-GCGTCTGCATTAGCATTTACTCTAG 478
|||||| || || || ||||| ||||||||| | || ||||| ||||| ||| |||| |
Sbjct 309 AGAGAAACTCCCGAGCCCAACCCAAGCGGCTG-CAGCATCTGCGTTAGCGTTTTCTCTCG 367
Query 479 GAGCGATTGTGCCGCTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTTAGGATTGGAG 538
| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 368 GGGCGATGGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAG 427
Query 539 TGATTGTGGCGGCGGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGG 598
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TGATTGTGGCAGCGGTTACGTTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGG 487
Query 599 GAAAAGCACCAGTGGTTAAGTCGTTGGTTCGGGTTTTGATTGGAGGATGGTTAGCTATGG 658
| |||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 488 GGAAAGCACCGGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTTAGCTATGG 547
Query 659 CCATTACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATATGTATGTGTG 717
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 548 CCATTACGTTTGGTTTTACAAAACTCATTGGGTCACATGGTC----ATATGTATGTGTG 602
> Ahg897075 jgi|Araly1|897075|Al_scaffold_0005_1041
Length=360
Score = 143 bits (77), Expect = 2e-33
Identities = 108/123 (88%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 427 CTTCCAAGTCCAACGCAAGCGGCTATC-GCGTCTGCATTAGCATTTACTCTAGGAGCGAT 485
|||| ||| |||||||||||||||| | | |||||| ||||||||| ||| | ||| ||
Sbjct 226 CTTCGAAGCCCAACGCAAGCGGCTA-CGGAGTCTGCGTTAGCATTTTCTCCAAGAGAAAT 284
Query 486 TGTGCCGCTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTTAGGATTGGAGTGATTGT 545
||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 285 TGTGCTGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAGCGATTGT 344
Query 546 GGC 548
|||
Sbjct 345 GGC 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5