BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43700.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936962 jgi|Araly1|936962|scaffold_501153.1 1971 0.0
Ahg941655 jgi|Araly1|941655|scaffold_602199.1 926 0.0
Ahg927902 jgi|Araly1|927902|scaffold_300359.1 315 9e-85
Ahg952585 jgi|Araly1|952585|scaffold_91900001.1 198 1e-49
> Ahg936962 jgi|Araly1|936962|scaffold_501153.1
Length=1291
Score = 1971 bits (1067), Expect = 0.0
Identities = 1212/1282 (95%), Gaps = 10/1282 (1%)
Strand=Plus/Plus
Query 70 AAT-CCAAATGTCAAAGCTAATGACCAGAACCAGCGGATCATCAAGCCCCAACACGATTC 128
||| ||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| ||
Sbjct 13 AATCCCAAATGTCAAGGCTAATGACCAGACCCAGCCGATCATCAAGCCCCAATACGAATC 72
Query 129 CAGACCAAATCGAATCACCAACAAGCTCAAGATCGGTGACGCAGACGACAAACGGATCGC 188
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CAGATCGAATCGAATCACCAACAAGCTCAAGATCGGTGACGCAGACGACAAACGGATCGC 132
Query 189 ACCAATTCGTGATACAAGGATACAGTTTAGCTAAAGGAATTGGTGTAGGGAAACACATAG 248
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 133 ACCAATTCGTGATCCAAGGATACAGTTTAGCTAAAGGAATCGGAGTAGGGAAACACATAG 192
Query 249 CAAGTGATAATTTCTCCGTAGGAGGTTATCAATGGACTATCTTCGTCTACCCTGACGGTA 308
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 193 CAAGTGATAATTTCTCCGTCGGAGGTTATCAATGGACTATCTTTGTCTACCCAGATGGTA 252
Query 309 AAAATCCAGAGGATAACTCTTCTTACGTCTCTGTGTTCATCGTTTTGGCTAGTGAATGTA 368
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 253 AAAATCCAGAAGATAACTCTTCTTACGTCTCTGTGTTCATCGTTTTGGCTAGTGAAGGTA 312
Query 369 CTGAAGTTAGAGCGCTTTTTGAGCTTTCTCTTGTTGATCAAAGTGGTAAAGGGAAGCATA 428
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 313 CTGAAGTTAGAGCGCTTTTTGAGCTTGCTCTTGTTGATCAAAGTGGTAAAGGGAAGCATA 372
Query 429 AGGTTCATAGCCATTTTAATCGTTCACTTGATGGTGGTCCTTATACGCTTAAGTACAGAG 488
|||||||||||||||| |||| || ||||||||||||||||| |||||||| || ||||
Sbjct 373 AGGTTCATAGCCATTTCGATCGGTCGCTTGATGGTGGTCCTTACACGCTTAAATATAGAG 432
Query 489 GAAGTATGTGGGGATACAAGCGTTTCTTCAGACGGTCCTTGCTTGAGACATCTGACTATC 548
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 433 GAAGTATGTGGGGATACAAGCGTTTCTTCAGACGTTCCTTGCTTGAGACATCTGACTACC 492
Query 549 TTAAAGACGATTGCTTGAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAATGCATT 608
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 493 TTAAAGACGATTGCTTGAAAATCAATTGTACAGTTGGAGTTGTCGTTTCAGAAATACATT 552
Query 609 GCCCACGGTTACTCTCGATTCATGTCCCAGACTCAGAACTTGGATCACATTTTGGAAAGT 668
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GCCCACGATTACTCTCGATTCATGTCCCAGACTCAGAACTTGGATCACATTTTGGAAAGT 612
Query 669 TGCTGGATACTTTACAAGGCTCGGATGTCACATTTGACGTTGCCGGTGAGAAGTTTCAAG 728
|||||||||||||| |||| || ||||||||||||||| |||| ||||||||||||||||
Sbjct 613 TGCTGGATACTTTAGAAGGTTCAGATGTCACATTTGACATTGCTGGTGAGAAGTTTCAAG 672
Query 729 CTCATAAATTGGTTTTGGCTGCACGATCTCAGTTTTTCAGATC-AATGTTTTACAATACT 787
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 673 CTCATAAATTGGTTTTGGCTGCACGATCTCAGTTTTTCAGATCGAA-GTTTTACAAT-GT 730
Query 788 -CTAGCAG-AGAACAACAGCGACGTAGTGATCAGCGATTTGGAACCTAAGGTTTTCAAGG 845
| || || | ||||||| ||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 731 CCCAGAAGCA-AACAACAACGAGGTAGCGATCAGCAATTTGGAACCTAAGGTTTTCAAGG 789
Query 846 CCTTGTTACACTTCATGTATAAAGATTCCCTCCCAGGAGATGTGGAACCATTAACGGCTC 905
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 790 CCTTGTTACACTTCATGTATAAAGATTCTCTCCCAGGAGATGTGGAACCAGTAACGGCTC 849
Query 906 ATTCATTTGACCTATTAAGGCCGTCCGAAATAGATGATACACTGATTGTAAAGCTTCTGG 965
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 850 ATTCATTTGACCTATTAAGGCTGTCCGAAATAGATGATACACTGATTGTAAAGCTTCTGG 909
Query 966 CAGCTGCGGAAATGTACAATCTGAGTAGGCTCAGATTATTGTGTGAATCTCACATCTGCA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CAGCTGCGGAAATGTACAATCTGAGTAGGCTCAGATTATTGTGTGAATCTCACATCTGCA 969
Query 1026 AAGGCATATCTATCAGCTCCGTGTCCAAGATCTTAGCTTTATCCGACAAATATAATGCAT 1085
||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 970 AAGCCGTATCTATCAGCTCCGTATCCAAGATCTTAGCTTTATCCGACAAATATAATGCAA 1029
Query 1086 CCGAACTAAAAAGCGTTTCCTTAAAATTCACTGCAGAAAACCTAGCAGCTGTTCTGCAGA 1145
| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTGAACTAAAAAGCGTATCCCTAAAATTCACTGCAGAAAACCTAGCAGCTGTTCTGCAGA 1089
Query 1146 CAAAAGCATATGAAGATCTGAAGGATGACTGTCCAAACCTCCAGTCTGAGCTACTAAAGG 1205
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1090 CAAAAGCTTATGAAGATCTGAAGGATGACTATCCAAACCTCCAGTCTGAGCTACTAAAGG 1149
Query 1206 CGGTCGCTGGTTATGACGACACAAGTAGCAGCGGAGGAGGAAAGTCTCAGAGTGTTTGGG 1265
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CGGTGGCTGGTTATGACGAAACAAGTAGCAGCGGAGGAGGAAAGTCTCAGAGTGTTTGGG 1209
Query 1266 CTCAACTCTCTAACGGTGGTGAGACCAGTAGCCGAAGGGTCAGGCAGCGAACCACTTAGA 1325
| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1210 CCCAACTCTCTGACGGTGGTGAGACCAGCAGCCGAAGAGTCAGGCAGCGAACCACTTAGA 1269
Query 1326 AGTGCTTCTTC---ACATGTTG 1344
|| |||||||| ||||||||
Sbjct 1270 AGAGCTTCTTCTTCACATGTTG 1291
> Ahg941655 jgi|Araly1|941655|scaffold_602199.1
Length=1273
Score = 926 bits (501), Expect = 0.0
Identities = 954/1169 (82%), Gaps = 45/1169 (4%)
Strand=Plus/Plus
Query 142 ATCACCAACAAGCTCAAGATCGGTGACGCAGACGACAAACGGATCGCACCAATTCGTGAT 201
||| || || || |||| |||||||||||||||| ||||| || || |||||||||||
Sbjct 65 ATCTCCGACGAGTTCAAAATCGGTGACGCAGACGGTGAACGGGTCACATCAATTCGTGAT 124
Query 202 ACAAGGATACAGTTTAGCTAAAGGAATTGGTGTAGGGAAACACATAGCAAGTGATAATTT 261
|||||||||||||||||| ||||| || ||| ||||||| |||||||| |||||||||||
Sbjct 125 ACAAGGATACAGTTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTT 184
Query 262 CTCCGTAGGAGGTTATCAATGGACTATCTTCGTCTACCCTGACGGTAAAAATCCAGAGGA 321
||||| ||||||||||| ||| || ||| ||||||| |||||||| ||||| |||||
Sbjct 185 TTCCGTCGGAGGTTATCAGTGGGGGATTTTCTTCTACCCGGACGGTAAGAATCCGGAGGA 244
Query 322 TAACTCTTCTTACGTCTCTGTGTTCATCGTTTTGGCTAGTGAATGTACTGAAGTTAGAGC 381
|||||| || ||||||||||| ||||||| ||||| |||||| | ||||||||||| ||
Sbjct 245 TAACTCGTCGTACGTCTCTGTTTTCATCGCATTGGCGAGTGAAGGAACTGAAGTTAGGGC 304
Query 382 GCTTTTTGAGCTTTCTCTTGTTGATCAAAGTGGTAAAGGG-AAGCATAAGGTTCATAGCC 440
|||||||||||| |||||||||| |||||||| |||||| || || |||||||||||||
Sbjct 305 GCTTTTTGAGCTAGCTCTTGTTGACCAAAGTGG-AAAGGGGAAACACAAGGTTCATAGCC 363
Query 441 ATTTTAATCGTTCACTTGATGGTGGTCCTTATACGCTTAAGTACAGAGGAAGTATGTGGG 500
||||| | || |||||||||||||| |||||||| || || ||||||||||| |||||||
Sbjct 364 ATTTTGAGCGGTCACTTGATGGTGGACCTTATACACTCAAATACAGAGGAAGCATGTGGG 423
Query 501 GATACAAGCGTTTCTTCAGACGGTCC-TTGCTTGAGACATCTGACTATCTTAAAGACGAT 559
|||||||||||||||||||||| ||| || ||||||||||||||||| || |||||||||
Sbjct 424 GATACAAGCGTTTCTTCAGACGTTCCATT-CTTGAGACATCTGACTACCTGAAAGACGAT 482
Query 560 TGCTTGAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAATGCATTGCCCACGGTTA 619
||||||| ||| |||||||| ||||||||||| ||||||||||| || ||||||| ||||
Sbjct 483 TGCTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACAATGCCCACAGTTA 542
Query 620 CTCTC-GATTCATGTCCCAGACTCAGAACTTGGATCACATTTTGGAAAGTTG--CTGGAT 676
| ||| | |||| ||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct 543 CACTCTG-TTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGT--GTTCTACTGGAT 599
Query 677 A-CTTTACAAGGCTCGGATGTCACATTTGACGTTGCCGGTGAGAAGTTTCAAGCTCATAA 735
| | | |||| || ||||| || |||||| |||| ||||||||||||| |||||||||
Sbjct 600 AGCATGG-AAGGTTCTGATGTAACTTTTGACATTGCTGGTGAGAAGTTTCTAGCTCATAA 658
Query 736 ATTGGTTTTGGCTGCACGATCTC-AGTTTTTCAGATCAATGTTTTACAAT-ACTCTAGCA 793
| | || ||||||| ||||||| | ||||||| ||| ||||||| || | | | | ||
Sbjct 659 ACTAGTACTGGCTGCTCGATCTCCA-TTTTTCAAATCTATGTTTTTCAGTGAGTTT-GCT 716
Query 794 G-AGAACAACAGC-GACGT-AGTGATCAGCGATTTGGAACCTAAGGTTTTCAAGGCCTTG 850
| ||| ||| | | || || | | || | |||||||||||||||||||| ||||| |||
Sbjct 717 GCAGA-CAATA-CAGAGGTTACT-ATTAATGATTTGGAACCTAAGGTTTTTAAGGCTTTG 773
Query 851 TTACACTTCATGTATAAAGATTCCCT-CCCAGGAGATGTGGAACCATT-AACGGCTCATT 908
|||| ||||||||||||||||| || ||| | ||||||||| || | ||| |||||
Sbjct 774 CTACAATTCATGTATAAAGATTCTCTTCCC-GAAGATGTGGAGCC-TGCAACAACTCATA 831
Query 909 CATTTGACCTATTAAGGCCGTCCGAAATAGATGATACACTGATTGTAAAGCTTCTGGCAG 968
||||||| | |||| || ||| |||||| | || ||| ||||||||||| || | ||||
Sbjct 832 CATTTGAGCGCTTAAAGCTGTCAGAAATATACGAGACATTGATTGTAAAGGTTTTAGCAG 891
Query 969 CTGCGGA-AATGTACAATCTGAGTAGGCTCAGATTATTGTGTGAATCTCACATCTGCAAA 1027
| || || || |||| | |||| ||||||||| || ||||||||||||||||||||||||
Sbjct 892 CAGCAGACAA-GTACGACCTGATTAGGCTCAGGTTGTTGTGTGAATCTCACATCTGCAAA 950
Query 1028 GGCATATCTATCAGCTCCGT-GTCCAAGATCTTAGCTTTATCCGACAAATATAATGCATC 1086
||| |||| |||| || || | ||||||||||||| || |||||| ||||||||| |
Sbjct 951 GGCGTATCAATCAAATCTGTCG-CCAAGATCTTAGCGTTGGCCGACAGATATAATGC-TA 1008
Query 1087 CG-AACTAAA-AAGCGTTT-CCTTAAAATTCACTGCAGAAAACCTAGCAGCTGTTCTGCA 1143
| ||||||| || ||||| ||||||| || ||||| || |||||||||||||| ||| |
Sbjct 1009 AGGAACTAAAGAA-CGTTTGCCTTAAATTT-ACTGCCGAGAACCTAGCAGCTGTACTGGA 1066
Query 1144 GACAAAAGCATATGAAGATCTGAAGGATGACTGTCCAAACCTCCAGTCTGAGCTACTAAA 1203
|||| | || || || | |||||||||| ||| | ||||||||| ||||| || ||
Sbjct 1067 GACAGACGCTTACCAACAGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAA 1126
Query 1204 GGCGGTCGCTGGTTATGACGACA--CAAGTAGCAG--C-GGAGGAGGAAAGTCTCAGAGT 1258
|||||| |||||| | || || | || ||| || | || |||| ||| |||||||||
Sbjct 1127 GGCGGTGGCTGGTCACGAGGA-AGGCA-GTAACACTTCTGGTGGAGCAAAATCTCAGAGT 1184
Query 1259 GTTTGGGCTCAA-CTCTCTAACGGTGGTG 1286
|| ||||| ||| || ||| |||| ||||
Sbjct 1185 GTGTGGGC-CAAACTTTCTGACGGCGGTG 1212
> Ahg927902 jgi|Araly1|927902|scaffold_300359.1
Length=1354
Score = 315 bits (170), Expect = 9e-85
Identities = 436/561 (78%), Gaps = 32/561 (6%)
Strand=Plus/Plus
Query 214 TTTAGCTAAAGGAATTGGTG-TAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAG 272
||| || |||||||| || | | || |||||||| || || |||| |||| |||| ||||
Sbjct 104 TTTGGCCAAAGGAATCGG-GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAG 162
Query 273 GTTATCAATGGACTATCT-TCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCT 331
| ||||||||| | |||| | |||| ||||| || || ||||| |||||||| || ||
Sbjct 163 GCTATCAATGGGCAATCTAT-TTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCT 221
Query 332 TACGTCTCTGTGTTCATCG-TTTTGGCTAGTGAAT-GTACTGAAGTTAGAGCGCTTTTTG 389
|| ||||| || ||||| | | || ||||| | || |||| || ||||| || || ||||
Sbjct 222 TATGTCTCCGTTTTCATTGCTCTT-GCTAGCG-ATGGTACCGATGTTAGGGCTCTCTTTG 279
Query 390 AGCTTTCTCTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAAT 448
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 280 AGCTTTCT-TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGAT 338
Query 449 CGTTCACTTGATG-GTGGTCCTTATACGCTTAAGTA-CAGAGGAAGTATGTGGGGATACA 506
||| | ||||| | | ||||||||||| || ||||| | | || || |||||||| ||||
Sbjct 339 CGTGCTCTTGA-GAGCGGTCCTTATACACTCAAGTATC-GTGGCAGCATGTGGGGCTACA 396
Query 507 AGCG-TTTCTTCAGACGGTCCT-TGCTTGAGACATCTGACTATCTTAAAGACGATTGCTT 564
|||| ||| || ||| | | | |||| || |||||||| | ||| || || ||||| ||
Sbjct 397 AGCGCTTTTTT-AGAAGA-CTTATGCTGGAAACATCTGATTTTCTGAAGGATGATTGTTT 454
Query 565 GAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAAT-GCATTGCCCACGGTTAC-TC 622
||||||||||||||| || |||||||| || |||||||| | ||||||||||||||| |
Sbjct 455 GAAAATTAATTGTACTGTGGGAGTTGTGGTCTCAGAAATAG-ATTGCCCACGGTTACAT- 512
Query 623 TCGATTCATGTCCCAG-ACTCAGA-ACTTGGATCACATTTTGGAAAG-TTGCTGGATACT 679
|| ||||||||||| | | || || | ||||||| ||||| || | | || ||||| | |
Sbjct 513 TCTATTCATGTCCCTGCA-TCTGATA-TTGGATCTCATTTCGGGATGCTT-CTGGAGAAT 569
Query 680 TTACAA-GGCTCGGATGTCACATTTGACGT-TGCCGGTGAGAAGTTTCAAGCTCATAAAT 737
| | || || ||| | || ||| | || | | ||||| ||||| | ||||| | |
Sbjct 570 G-AGGACGGTTCAGATATAACTTTTAATGTCT-CTGGTGAAAAGTTCCGTGCTCACAGGT 627
Query 738 TGGTTTTGGCTGCACGATCTC 758
| || |||||||| |||||||
Sbjct 628 TAGTATTGGCTGCTCGATCTC 648
> Ahg952585 jgi|Araly1|952585|scaffold_91900001.1
Length=418
Score = 198 bits (107), Expect = 1e-49
Identities = 234/294 (80%), Gaps = 14/294 (5%)
Strand=Plus/Plus
Query 214 TTTAGCTAAAGGAATTGGTG-TAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAG 272
||| || |||||||| || | | || |||||||| || || |||| |||| |||| ||||
Sbjct 104 TTTGGCCAAAGGAATCGG-GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAG 162
Query 273 GTTATCAATGGACTATCT-TCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCT 331
| ||||||||| | |||| | |||| ||||| || || ||||| |||||||| || ||
Sbjct 163 GCTATCAATGGGCAATCTAT-TTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCT 221
Query 332 TACGTCTCTGTGTTCATCG-TTTTGGCTAGTGAAT-GTACTGAAGTTAGAGCGCTTTTTG 389
|| ||||| || ||||| | | || ||||| | || |||| || ||||| || || ||||
Sbjct 222 TATGTCTCCGTTTTCATTGCTCTT-GCTAGCG-ATGGTACCGATGTTAGGGCTCTCTTTG 279
Query 390 AGCTTTCTCTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAAT 448
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 280 AGCTTTCT-TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGAT 338
Query 449 CGTTCACTTGATG-GTGGTCCTTATACGCTTAAGTA-CAGAGGAAGTATGTGGG 500
||| | ||||| | | ||||||||||| || ||||| | | || || |||||||
Sbjct 339 CGTGCTCTTGA-GAGCGGTCCTTATACACTCAAGTATC-GTGGCAGCATGTGGG 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5