BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43710.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491422 jgi|Araly1|491422|fgenesh2_kg.7__855__AT3G43710.1 1280 0.0
> Ahg491422 jgi|Araly1|491422|fgenesh2_kg.7__855__AT3G43710.1
Length=894
Score = 1280 bits (693), Expect = 0.0
Identities = 833/900 (93%), Gaps = 12/900 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACAACGCCAAAACGATCCAAGACTTTGTTAATGTCAAACGGAGAAGAGAGAAGA 60
||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGAGAAAGCCAAAACGTTCCAAGACTTTGTTAATGTCAAACGAAGAAGAGAGAAGA 60
Query 61 AGCATGACGTTTGGTATTGAGATGCTTCCTGATGATTTAGTATTAAGTTGTCTAGCTCGT 120
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 AGCATGACGTTTGGTATTCAGATGCTTCCTGATGATTTAGTATTAAATTGTCTAGCTCGT 120
Query 121 GTGC-CAAGAATGTACTATCCAATTCTCTCCTTAGTCTCCAAGAGATTCCGTTCTTTCCT 179
|| | |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 121 GT-CTCAAGAATGTATTATCCAGTTCTCTCCTTAGTCTCCAAGAGATTCCGCTCTTTCCT 179
Query 180 CACTTCAACGGAGCTTTACCAAACCCGAAACCTCTTAGGCAGCACCGAGAGTTTTCTCTT 239
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CACTTCAACGGAGCTTTTCCAAACCCGAAACCTCTTAGGCCGCACCGAGAGTTTTCTCTA 239
Query 240 CGTGTGCTTACGAAT-CGTCAACGATTCTAACCCACTACGTTTGTTTACTCTCTGCCGGA 298
||||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 240 CGTGTGCTTACGAATCCGTC-ACGTTTCAAACCCACTACGTTTGTTTACTCTCTGCCGGA 298
Query 299 GACCAAATAGCTTGACGAAAGTTATGGTCCCAATTTTATCTCCCGATTCTATTCCCAAGT 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GACCAAATAGCTCGACGAAAGTTATGGTCCCAATTTTATCTCCCGATTCTATTCCCAAGT 358
Query 359 TCTTGCCAGATGTTGTACTGGTTGGTTCTAATATCTATGTCATTGGCGGTTTAATAAACA 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 359 ACTTGCCAGATGTTGTACTGGTTGGTTCTAATATCTATGTCATTGGCGGTTCAATAAAGA 418
Query 419 ACAATGCATCT-CATAAAGTCATGGTCATGGACTGTCGTTCTCACACATGGCGTGAGGCC 477
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACAATGCATCTTC-TAGCGTCATGGTCATGGACTGTCGTTCTCACACATGGCGTGAGGCC 477
Query 478 CAAGGCACGTGTG-TCGCCCGTGTGAGCCCATCTGCTTGCGTTCTTGATGGAAAAATATA 536
||| || | ||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 CAAATCATGCGTGCT-GCACGTGTGAACCCATCTGCTTGCGTTCTTGATGGAAAAATATA 536
Query 537 TGTAGCAGGAGGCTGCAAAAATCTAGATGCAACTATGTGGATGGAGGTATTCGATACAAA 596
|||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 537 TGTAGCAGGAGGCTGCCAAAATCCGGATGCAACTATCTGGATGGAGGTATTCGATACAAA 596
Query 597 GACTGAAAGTTGGGAGTTTGTGTCGAGTCCTGGCGAGGAAATTTGTAGGGACCTTACTAG 656
|||| ||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 597 GACTCAAACTTGGGAGTTTGTGTCGAGTCCTGGCGAGGAAATATGCAGGGATCTTACTAG 656
Query 657 CTGCGAAAGCATAGGGTATGATGGAAATGTCTACGTGGAATCTATGAAGACGTATGGACT 716
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||
Sbjct 657 GTGCGAAAGCATAGGGTATGATGGAAATGTCTACGTGAAATCTATGCAGACATATGGGCT 716
Query 717 TTACGAGCTGCATAAAGGGAGATGGAGAGAAGGACAAT-ACTCGATGAGTAGGGGTGGTA 775
|||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||
Sbjct 717 TTACGAGCTGCATAAAGGTAGATGGAGAAAAGGACAACCA-TCGATGAGTAGGGGTGGTA 775
Query 776 GTTTATCATCTCAATGTGTGATCGATAACGTGCTCTATCGTTCTTGGAGCTATATGGTCG 835
| |||||||||| ||||||||||||||||||||||||| ||| |||||||| |||| |||
Sbjct 776 GCTTATCATCTCTATGTGTGATCGATAACGTGCTCTATAGTTGTTGGAGCTGTATGATCG 835
Query 836 AGTGGTACGACTCTGAG-AACAAATTGTGGAATAGCTTGAAGGGTTTGGAGAAATTGTTT 894
| ||||| ||||||||| || ||||||||||| || ||||||||||||||| |||||||
Sbjct 836 ATTGGTATGACTCTGAGGAA-AAATTGTGGAAAAGGTTGAAGGGTTTGGAGGGATTGTTT 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5