BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43720.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484810 jgi|Araly1|484810|fgenesh2_kg.5__802__AT3G43720.1 1096 0.0
> Ahg484810 jgi|Araly1|484810|fgenesh2_kg.5__802__AT3G43720.1
Length=777
Score = 1096 bits (593), Expect = 0.0
Identities = 720/780 (92%), Gaps = 14/780 (2%)
Strand=Plus/Plus
Query 20 ttttCGTCTCTCAAACCAACGCAAAAGAACAATGTCTAACGTTGTAGTAATCGCCGTTGT 79
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCTTCTCTCAAACCAACGC-AAAGAACAATGTCTAACGTTGTAGTAATCGCCGTTGT 59
Query 80 TCTCATCGTAGCATCGCTAACAGGACATGTGTCAGCACAAATGGATATGTCTCCGTCGTC 139
||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 TCTCATCACAGCCTCACTAACAGGACATGTGTCAGCACAAATGGATATGTCTCCATCGTC 119
Query 140 AGGACCATCGGGTGCACCAGACTGCATGGCGAACCTAATGAACATGACAGGCTGTCTCTC 199
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 120 AGGACCGTCGGGAGCACCAGACTGCATGGCGAACCTAATGAACATGACGGGCTGTCTTTC 179
Query 200 GTACGTTACGGTCGGAGAAGGTGGTGGTGCGGCCAAGCCGGACAAGACGTGTTGTCCGGC 259
||||||||||||||||||||| || || ||||| |||||||||||||| |||||||||||
Sbjct 180 GTACGTTACGGTCGGAGAAGGCGGAGGCGCGGCTAAGCCGGACAAGACTTGTTGTCCGGC 239
Query 260 GCTAGCGGGGCTAGTGGAGAGCTCGCCGCAATGCTTATGTTACCTCCTCTCCGGTGACAT 319
| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GTTGGCGGGGCTGGTGGAGAGCTCGCCGCAATGCTTATGTTACCTTCTCTCCGGTGACAT 299
Query 320 GGCGGC-ACAACTTGGAATCAAGATTGATAAGGCAAAGGCTCTCAAACTTCCCGGAGTTT 378
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCGGCTAC-GCTTGGAATCAAGATTGATAAGGCAAAGGCTCTCAAACTTCCCGGAGTTT 358
Query 379 GCGGCGTGATCACTCCCGATCCTTCACTTTGTTCTCTTTTTGGAATTCCTGTTGGAGCAC 438
||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 359 GCGGCGTCCTCACTCCGGATCCATCACTTTGTTCTCTTTTTGGTATTCCAGTTGGAGCAC 418
Query 439 CTGTAGCTATGGG-AGACGAGGGAGCCTCCCCAGCCTATGCTCCAGGTTCGATGTCAGGT 497
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGGTAGCTATGGGCA-ACGAGGGAGCCTCCCCAGCCTATGCTCCAGGTTCGATGTCAGGT 477
Query 498 GCAGAATCACCA------GGAGGATTTGGGTCGGGTCCTTCGGCTAGTAGAGG-G-A-GC 548
|||||||||||| ||||||||||||||||||||||||||||| | | | | | ||
Sbjct 478 GCAGAATCACCATCACCAGGAGGATTTGGGTCGGGTCCTTCGGCTAGCAAAAGAGCAAGC 537
Query 549 GATGCACCAAGCAGTGCACCTTATTCTCTTTTTCTCAATCTTATAATTTTCCCATTAGCT 608
| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTGCATCAAGCACCGCATCTTATTCTCTTTTTCTCAATCTTATAATTTTCCCATTAGCT 597
Query 609 TTTGCATTTTACATCTTTTGCTGATTTCATTCTCTTCCAACCATTAACAACACCATTATT 668
|||| ||||| |||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 598 TTTGTGTTTTATATCTATTGCTGATTTCTTTTTCTTCCAACCATTAACAACACCATTATT 657
Query 669 TGTTATGTATTTTCTTAAAAGAGTATTATTGCTTTTGTAGGCTATGTTCTTGAATTTATT 728
||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 658 TGTAATGTATTTTCTTAAAAGAGTATTGTTGCTTTTGTAGGCTATGTCCTTGAATTTATT 717
Query 729 ACTTTGTGTATCCACGGATTATTTCTTCATTCATCTTATTGAATAAAGATTGtttttttt 788
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTTTGTGTGTCCGCGGATTATTTCTTCATTCATCTTATTGAATAAAGATTGTTTTTTTT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5