BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43740.2
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484812 jgi|Araly1|484812|fgenesh2_kg.5__804__AT3G43740.2 1173 0.0
> Ahg484812 jgi|Araly1|484812|fgenesh2_kg.5__804__AT3G43740.2
Length=809
Score = 1173 bits (635), Expect = 0.0
Identities = 756/814 (93%), Gaps = 10/814 (1%)
Strand=Plus/Plus
Query 10 AAACTTGTAAAAGGGTTTGAAAAAGTCAGATTACGAAACCCTAGTTCTCTCTCCGGCGAA 69
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||
Sbjct 1 AAACTTGTAAAAGGGTTTGAAAAAGTGAGATTACGAAACCCTAATTCTCTCTCCGGC-AA 59
Query 70 -AACCATGGTGGCGCAAAACAGTCGGCGGGAGCTTCTAGCAGCTTCCCTGATCCTAACTT 128
||| |||||||||||||||||||| |||||||||||||||||||| || |||||||| |
Sbjct 60 CAACTATGGTGGCGCAAAACAGTCGACGGGAGCTTCTAGCAGCTTCTCTAATCCTAACCT 119
Query 129 TAGCTCTAATTCGTCTAACGGAAGCAAACTCCGAAGGGGACGCTCTTCACGCGCTTCGCC 188
|||||||||||||| |||| ||||||||||||||||| ||| |||||||||| ||||| |
Sbjct 120 TAGCTCTAATTCGTTTAACAGAAGCAAACTCCGAAGGCGACTCTCTTCACGCTCTTCGTC 179
Query 189 GGAGCTTATCAGATCCAGACAATGTTGTTCAGAGTTGGGATCCAACTCTTGTTAATCCTT 248
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 180 GGAGCTTATCAGATCCAGACAATGTTCTTCAAAGCTGGGATCCAACTCTTGTTAATCCTT 239
Query 249 GTACTTGGTTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCTGGATTTGGGGA 308
|||| ||||| ||||| ||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 240 GTACCTGGTTCCATGTTACTTGTAATCAACACAACCAAGTCACTCGACTGGATTTGGGGA 299
Query 309 ATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATC 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 ATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAGTATC 359
Query 369 TGTATGGAATCATCACTCTTTTGCCTTTTGATTATCTGAAAAC--A-TTTAC-ATTATCA 424
||||||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||
Sbjct 360 TGTATGGAATCATCACTCTTTTGCCTTTTGATTATCTGAAAACTTACTTTTCGATTACCA 419
Query 425 GTCACACATATAACATTTTGCTTTGAGTCATATAGTGAACTCTACAAAAACGAGATTCAA 484
|| | || | | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 ACCA-A-ATTTTA--TTTTGCTTTGATTCATATAGTGAACTCTACAAAAACGAGATTCAA 475
Query 485 GGAACTATACCTTCTGAGCTTGGAAATCTGAAGAGTCTAATCAGTTTGGATCTGTACAAC 544
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 476 GGAACTATACCTTCTGAGCTTGGAAATCTGAAGAGTCTGATCAGTTTGGATCTGTACAAC 535
Query 545 AACAATCTCACCGGGAAAATCCCATCTTCTTTGGGAAAATTGAAGTCACTTGtttttttG 604
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |
Sbjct 536 AACAATCTCACCGGGAAAATTCCATCGTCTTTGGGAAAATTGAAGTCACTTGTCTTTCTA 595
Query 605 CGGCTTAACGAAAACCGATTGACCGGTCCTATTCCTAGAGAACTCACAGTTATTTCAAGC 664
||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| ||
Sbjct 596 CGGCTTAACGAAAACCGATTGACCGGTCCAATTCCTAGAGAACTCACGGCTATCTCATGC 655
Query 665 CTTAAAGTTGTTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCT 724
|| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 656 CTCAAAGTTGTTGATGTCTCAGGCAATGATTTGTGTGGAACGATCCCAGTAGAAGGACCT 715
Query 725 TTTGAACACATTCCTATGCAAAACTTTGAGAACAACCTGAGATTGGAGGGACCAGAACTA 784
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 716 TTTGAACACATTCCTATGCAAAACTTTGAGAACAACCTGAGACTAGAGGGACCAGAACTA 775
Query 785 CTAGGTCTTGCGAGCTATGACACCAATTGCACTT 818
||||||||||||||||| ||||||||||||||||
Sbjct 776 CTAGGTCTTGCGAGCTACGACACCAATTGCACTT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30307719015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5