BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43750.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091 968 0.0
Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 534 4e-151
Ahg936973 jgi|Araly1|936973|scaffold_501164.1 464 5e-130
Ahg347642 jgi|Araly1|347642|fgenesh1_pg.C_scaffold_5001034 388 3e-107
Ahg897345 jgi|Araly1|897345|Al_scaffold_0005_1311 294 7e-79
Ahg323077 jgi|Araly1|323077|fgenesh1_pm.C_scaffold_5000621 183 2e-45
Ahg897338 jgi|Araly1|897338|Al_scaffold_0005_1304 152 5e-36
Ahg937218 jgi|Araly1|937218|scaffold_501409.1 147 2e-34
Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435 110 3e-23
> Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091
Length=798
Score = 968 bits (524), Expect = 0.0
Identities = 681/754 (90%), Gaps = 22/754 (3%)
Strand=Plus/Plus
Query 283 ATGGGGAGATCC-ACGCCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACG 341
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGATCCGTC-CCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACG 59
Query 342 CATGAGACAACAATTGAGATATAGTAATCCTATTCTGGTGACTAGAGATCAAATTAGCTT 401
|||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 60 CATGAGACAACAATTGTCATCTAGTAATCCCATTCTGGTGACTAGAGATCAAATTAGCTT 119
Query 402 TGCTTATAAGCTTGCAATGGAAACAGTAGTTTCCGAGATCAGCATATGTATGCCTGCGAC 461
||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||||
Sbjct 120 TGCTTATAAGCTTGCAATGGAAACAGTAGCTTCGGATATCAGCATACGTATGCCTGCGAC 179
Query 462 TTGCAGCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTCTGTT-GCTATAT 520
||||||||||||||||||| ||| ||||||||||||| |||||| ||||||| || |||
Sbjct 180 TTGCAGCATCTGTTTCAATGATGATTTGGAAGCTGAGCAGATGTATTCTGTTCCCT-TAT 238
Query 521 GCGGTCATCAATTCTGTGTGGAGTGCGTGAAAC-ATTATATAGAAGTGAAGCTACTCGAG 579
||||||||||||||||||| |||||||||| || | |||||||||||| ||||||||||
Sbjct 239 GCGGTCATCAATTCTGTGTCGAGTGCGTGAGACGA-CATATAGAAGTGAGGCTACTCGAG 297
Query 580 GGAGGTGTACCGAGATGTCTTGATTATCAATGCGAGTCTAAGCTAACTCTTACAAGTTGT 639
||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 298 GGAAGTGTACCGACATGTCTTCATTATCAATGCGAGTCTAAGCTAACTCTTAGAAGTTGT 357
Query 640 GGCAATCTTTTAACACCTAAACTAAAGGCGATAT-GGAAGCAAAGGATCGAAGAGGAGTT 698
| |||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||
Sbjct 358 GACAATCTTTTAACACCTAAACTAAAAGCGATATGGGAA-CAAAGGATCGAAGAGGAATT 416
Query 699 GATTCTTGTAG-CGGAGAGAGTTTATTGTCCAAACCCGAGGTGCTCGGGATTAATGTCGA 757
||||| ||| | |||| ||||||||||||||||| |||| |||| |||||||||||||||
Sbjct 417 GATTCCTGT-GCCGGATAGAGTTTATTGTCCAAAACCGACGTGCGCGGGATTAATGTCGA 475
Query 758 AAACCGAGCTCTCTACATCAACTGAAGAAGATGTAA-GTACTAGGACTTGTTGTGTTAAA 816
|||||||||| ||||| |||||||||||||||| || ||| ||||| ||||||||| |||
Sbjct 476 AAACCGAGCTTTCTACCTCAACTGAAGAAGATG-AAGGTAGTAGGAGTTGTTGTGTCAAA 534
Query 817 TGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGAT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGAT 594
Query 877 GATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGAT-ATAAAGCTAAAAGTTTTGGC 935
|||||||||||||| |||| |||||||||| ||||||| | ||| ||||||||| | ||
Sbjct 595 GATTACAAGAGATTAGGTCTGAATCCTACAACAAATGATGAAAAA-CTAAAAGTTCTAGC 653
Query 936 AAATCAGCAAAA-GTGGAGTCAATGTGCAAAGTGCCAACACATGATTGCACGTATCGAA- 993
||||||| |||| |||| ||||||||| ||||||| |||||||||| | || | |||||
Sbjct 654 AAATCAG-AAAATGTGGCGTCAATGTGAAAAGTGCAAACACATGATCGAACTT-TCGAAA 711
Query 994 GGATGCAACG-TAATAATCT-GCAGGTATCATCA 1025
||||||| | | ||| || |||||||||||||
Sbjct 712 GGATGCATCCATG-TAA-CTTGCAGGTATCATCA 743
> Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321
Length=819
Score = 534 bits (289), Expect = 4e-151
Identities = 587/726 (81%), Gaps = 40/726 (6%)
Strand=Plus/Plus
Query 301 GAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACGCATGAGACAACAATTGA-G 359
|||||||| ||||| || |||||||| |||||||||||||||| ||||||| ||||| |
Sbjct 79 GAGCAAGAGAACATCGCTTTGCTAATGGATGATGTGCAACGCATTAGACAACGATTGACG 138
Query 360 ATATAG-TAATCCTATTCTGGTGACTA-GAGATCAAATTAGCTTTGCT-TAT-AAGCTTG 415
| ||| | |||| |||||||||||| || ||||||| | |||| | ||| || ||||
Sbjct 139 -TCTAGCT-TTCCTGTTCTGGTGACTAGGA-ATCAAATGAAATTTG-TGTATGAA-CTTG 193
Query 416 CAATGGAAACAGTAGTTTCCGAGATCAGCATATGTATGCCTG--C-------GACTTGCA 466
||||||||||| ||||||| || ||||||||| ||| |||| | ||||||||
Sbjct 194 CAATGGAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCAGAAGAAGACTTGCA 253
Query 467 GCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTCTGTTGCTATATGCGGTC 526
| || |||| | || || || ||| ||||| ||||||||||| ||| | |||||||||
Sbjct 254 GTATTTGTTCCGATGATAACTTCGAACCTGAGCAGATGTTTTCTATTGATTTATGCGGTC 313
Query 527 ATCAATTCTGTGTGGAGTGCGTGAAAC-ATTATATAGAAGTGAAGCTACTCGAGGGAGGT 585
|| ||||||||||||||||| |||||| | |||||||||||| |||||||| |||||||
Sbjct 314 ATGAATTCTGTGTGGAGTGCATGAAACGA-CATATAGAAGTGAGGCTACTCGCGGGAGGT 372
Query 586 GTACCGAGATGTCTTGATTATCAATGCGA-GTCTAAGCTAACTCTTACAAGTTGTGGCAA 644
||||||||||||| | ||||||||||| | |||||| || |||||| ||| |||| |||
Sbjct 373 GTACCGAGATGTCCTCATTATCAATGC-AGGTCTAAACTTACTCTTGGAAGCTGTGTCAA 431
Query 645 TCTTTTAACACCTAAACTAAAGGCGATAT-GGAAGCAAAGGATCGAAGAGGAGTTGATTC 703
|||||| ||| |||||||||| || || | |||| | || ||||| ||||| | |||||
Sbjct 432 TCTTTTGACATCTAAACTAAAAGCAATGTGGGAA-CGAATAATCGACGAGGAATCGATTC 490
Query 704 TTGTAGCGGAGAGAGTTTATTGTCCAAACCCGAGGTGCTCGGGATTAATGTCGAAAACCG 763
||| ||||| ||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 491 ATGTGGCGGACAGAGTTTATTGTCCAAACCCGAGGTGCTCAGCCTTAATGTCGGTAACCA 550
Query 764 AGCTCT----CT-ACA-TCAACTGAAGAAGATGTAAGTACTAGGACTTGTTGTGTT-AAA 816
|||||| || | | || ||| |||||||||| | |||| || | ||| || |||
Sbjct 551 AGCTCTCAAACTCAAACTCTACTAAAGAAGATGT-A--ACTATGAGAAGCTGT-TTCAAA 606
Query 817 TGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGAT 876
||| ||||||||||||| |||| ||||||||||||||||||||| |||||||| ||| |
Sbjct 607 TGCAGTGAACCCTTTTGTATCACCTGCAAAGTTCCGTGGCATAGCAACTTGTCGTGCAAC 666
Query 877 GATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGATATAAAGCTAAAAGTTTTGGCA 936
|||||||||||||||||||||||||||||| | ||||||||||| | |||| | | |||
Sbjct 667 GATTACAAGAGATTGGGTCCAAATCCTACAGCAGATGATATAAAGATGAAAGCTCTAGCA 726
Query 937 AATCAGCAAAA-GTGGAGTCAATGTGCAAAGTGCCAACACATGATTGCACGTATCG-AAG 994
|| || |||| |||| ||||||||| ||| || |||||||| || | || | ||| |||
Sbjct 727 TATAAG-AAAATGTGGCGTCAATGTGAAAATTGTCAACACATAATCGAACTT-TCGGAAG 784
Query 995 GATGCA 1000
||||||
Sbjct 785 GATGCA 790
> Ahg936973 jgi|Araly1|936973|scaffold_501164.1
Length=506
Score = 464 bits (251), Expect = 5e-130
Identities = 277/290 (96%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 727 CCAAACCCGAGGTGCTCGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAA 786
||||| |||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 CCAAAACCGACGTGCGCGGGATTAATGTCGAAAACCGAGCTTTCTACCTCAACTGAAGAA 60
Query 787 GATGTAAGTACTAGGACTTGTTGTGTTAAATGCGGTGAACCCTTTTGCATCAACTGCAAA 846
|||| | ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GATGGAGGTAGTAGGAGTTGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAA 120
Query 847 GTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACA 180
Query 907 AAAAATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAAAGTGGAGTCAATGTGCAAAG 966
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 181 AAAAATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAAAGTGGCGTCAATGTGGAAAG 240
Query 967 TGCCAACACATGATTGCACGTATCGAAGGATGCAACGTAATAATCTGCAG 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TGCCAACACATGATTGCACGTATCGAAGGATGCAACGTAGTAATCTGCAG 290
> Ahg347642 jgi|Araly1|347642|fgenesh1_pg.C_scaffold_5001034
Length=690
Score = 388 bits (210), Expect = 3e-107
Identities = 450/562 (80%), Gaps = 31/562 (6%)
Strand=Plus/Plus
Query 450 TATGCCTGCGACTTGCAGCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTC 509
|||||||||||||||| | ||||||||| | ||| |||||||||||| ||||||||||
Sbjct 36 TATGCCTGCGACTTGCTGTATCTGTTTCGACCATGACTTGGAAGCTGAGCAGATGTTTTC 95
Query 510 TGTTGCTATATGCGGTCATCAATTCTGTGTGGAGTGCGTGAAAC-ATTATATAGAAGTGA 568
|||| | ||||| |||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 96 TGTTTATTTATGCCGTCATCAATTCTGTGTGGAGTGCGTGAAACGAT-ATATAGAAGTAA 154
Query 569 AGCTACTCGAGGGAGGTGTACCGAGATGTCTTGATTATCAATGCGAGTCTAAGCTAACTC 628
||||| | ||||||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 155 AGCTAGTTGAGGGAGGTGTACTAAGATGTCCTCATTATCAATGCGAGTCTAAGCTAACTC 214
Query 629 TTACAAGTTGTGGCAATCTTTTAACACCTAAACTAAAG-G-CGATATGG-AAGCAAAGGA 685
||| |||||||| |||| |||| |||| ||||| |||| | | || ||| || | |||||
Sbjct 215 TTAGAAGTTGTGACAATATTTTGACACATAAAC-AAAGAGAC-ATGTGGGAA-CGAAGGA 271
Query 686 -TCGAAGAGGAGTT-GATTCTTGT-AGCGGAGAGAGTTTATTGTCCAAACCCGAGGTGCT 742
| || || || | | ||| || | |||| || ||||| || ||||| || |||||||
Sbjct 272 ATAGA-GAAGAATCAG-TTCCTGCGA-CGGACAGGGTTTACTGCCCAAATCCAAGGTGCT 328
Query 743 CGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAAGATGTAAGT-ACTAGG 801
||| |||||||||||| |||||||||| | ||||||| |||||| || | || | ||
Sbjct 329 CGGCTTTAATGTCGAAAGCCGAGCTCTCCAAATCAACTAAAGAAGCTGGA-GTTAAGAG- 386
Query 802 ACTTGTTGTGTTAAATGCGGTGAACCCTTT-TGCATCAACTGCAAAGTTCCGTGGCATAG 860
|| |||| || |||||| | |||| ||| ||||| |||||||||||| ||||||||
Sbjct 387 AC--GTTGCGTCAAATGCTCTCAACC-TTTCTGCATGAACTGCAAAGTTTTGTGGCATAA 443
Query 861 TAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGATATAAA 920
|||||||| ||||| ||||| | ||||| | || | || ||| | ||||||| |
Sbjct 444 TAACTTGTTGTGCGACGATTATATGAGAT-G--TC-A--TCATACGGCAGATGATATGAT 497
Query 921 GCTAAAAGTTTTGGCAAATCAGCAAAA-GTGGAGTCAATGTGCAAAGTGCCAACACATGA 979
||||||| | | |||||||| || | |||| ||||||||| ||| |||||||| ||||
Sbjct 498 GCTAAAAAATCTAGCAAATCAT-AATATGTGGCGTCAATGTGTAAATTGCCAACAGATGA 556
Query 980 TTGCACGTATC-GAAGGATGCA 1000
| | |||| || ||||||||||
Sbjct 557 TCGAACGT-TCAGAAGGATGCA 577
> Ahg897345 jgi|Araly1|897345|Al_scaffold_0005_1311
Length=651
Score = 294 bits (159), Expect = 7e-79
Identities = 498/654 (76%), Gaps = 53/654 (8%)
Strand=Plus/Plus
Query 283 ATGGGGAGATCCACGCCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACGC 342
||||||||||| ||| || | || || || ||| |||||||| ||||||||||||||
Sbjct 1 ATGGGGAGATCTGTGCCTAAGGATGAGAAAATCGCCTTGCTAATGGATGATGTGCAACGC 60
Query 343 ATGAGACAACAATTGAGATATAGTAAT-CCTATTCTGGTGACTAGAGATCAAA-TTAGCT 400
|| ||||||||||| | || ||| || |||||||| ||| ||||| |||||| | | |
Sbjct 61 ATCAGACAACAATTTATATCTAG-CATCCCTATTCTTGTGGCTAGAAATCAAACTGA-TT 118
Query 401 TTGCT-TATAAGCTTGCAATGGAAACAGTAGTTTC-CG--AGATCAG--C-AT--AT-GT 450
||| | |||| ||||||| ||||||| ||||||| || ||||| | || | ||
Sbjct 119 TTG-TCCATAAACTTGCAAAGGAAACAATAGTTTCTCGCCTCATCAGACCTATGCCTCGT 177
Query 451 A-TGC-C---TG-CGACTTGCAGCATCTG-TTTCAATAATGTTTTGGAAGCTGAGAAGAT 503
| ||| | | |||||| | | ||| ||| | ||||| | ||| |||||||||
Sbjct 178 ACTGCTCAGAAGAAGACTTGTGGTAACTGCTTT-GACGATGTTATCAAAGGTGAGAAGAT 236
Query 504 GTTTTCTGTTGCTATATGCGGTCATCAATTCTGTGTGGAGTGCGTGAAACATTATATAGA 563
|||||| |||||| ||||| ||||||||||||||||||| ||| ||||||| |||||||
Sbjct 237 GTTTTCCGTTGCTTTATGCCGTCATCAATTCTGTGTGGACTGCATGAAACAACATATAGA 296
Query 564 AGTGAAG-CTACTCGAGGGAGGTGTACCGAGATGTCTTGATTATCAATGCGA-GTCTAAG 621
|||| || ||| ||| ||||||||||| ||||||| | || || ||| | || ||
Sbjct 297 AGTG-AGTCTAAACGACGGAGGTGTACCAAGATGTCCTCATGATGGCTGC-ACATCAAAC 354
Query 622 CT-AACTCTTACA-AG-TTGTGGCAATCTTTTAACACCTAAACTAAAG-GCGATATGGAA 677
|| || || || | || |||| | ||||||| |||||||||| |||| | ||| |||||
Sbjct 355 CTGAA-TC-TA-ATAGCTTGTACCCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGAA 410
Query 678 GCAAAGGATCGAAGAGGAGTTGATT-CTTGTAGCGGAGAGAGTTT-ATTGTCCAAACCCG 735
||||||||| ||||||||| ||| | |||| || ||| ||| |||| ||||| ||
Sbjct 411 ACAAAGGATCAAAGAGGAGTCAATTAC-TGTATATGACAGA-TTTCATTGCCCAAATCCA 468
Query 736 AGGTGCTCGGG-ATTAATGTCGAAAACCGAGCTC-TCTACATCAACTGAAGAAGATGTAA 793
|| |||| ||| || |||||||||||||||||| | || ||| ||| || |||| |
Sbjct 469 AGTTGCT-GGGCTTTGATGTCGAAAACCGAGCTCAT-TAAATCTACT---GACGATG-GA 522
Query 794 GTACTAGGACTTGTTG-TGTTAAATGC-GGTGAACCCTTTTGCATCAACTGCAAAGTTCC 851
|| ||||| || | |||||||| || ||||||||||||| || |||||||||||
Sbjct 523 GT--TAGGAGACACTGCT-TTAAATGCTGG-AAACCCTTTTGCATTAATTGCAAAGTTCC 578
Query 852 GTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTAC 905
|||||||||||||||||| ||| | || ||||| |||| |||| ||| |||||
Sbjct 579 GTGGCATAGTAACTTGTCTTGCAAGGAATACAAAAGATCAGGTCAAAAGCCTAC 632
> Ahg323077 jgi|Araly1|323077|fgenesh1_pm.C_scaffold_5000621
Length=582
Score = 183 bits (99), Expect = 2e-45
Identities = 141/161 (88%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 734 CGAGGTGCTCGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAAGATGTAA 793
||| |||||||| ||||||||| ||| |||||||||| ||| ||| |||||| || ||
Sbjct 311 CGATGTGCTCGGCTTTAATGTCGGTAACAGAGCTCTCTATATCTACTCAAGAAGCTG-AA 369
Query 794 GTACTAGGACTTGTTGTGTTAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGT 853
|| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 370 GT--TAGGAGATGTTGTGTCAAATGCAGTGAACCCTTTTGCATCAACTGCAAAGTTCCAT 427
Query 854 GGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGT 894
|||||||| |||||||||||| |||||||||||||||||||
Sbjct 428 GGCATAGTGACTTGTCATGCGGTGATTACAAGAGATTGGGT 468
Score = 167 bits (90), Expect = 2e-40
Identities = 118/131 (90%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 543 GTGCGTGAAAC-ATTATATAGAAGTGAAGCTACTCGAGGGAGGTGTACCGAGATGTCTTG 601
||||||||||| | ||||||||| || ||||||||||||| ||||||||||||||| ||
Sbjct 186 GTGCGTGAAACGA-CATATAGAAGCGAGGCTACTCGAGGGACGTGTACCGAGATGTCCTG 244
Query 602 ATTATCAATGCGAGTCTAAGCTAACTCTTACAAGTTGTGGC-AATCTTTTAACACCTAAA 660
|||||||||||||||||||||||||| ||| |||||||| | |||||||| |||||||||
Sbjct 245 ATTATCAATGCGAGTCTAAGCTAACTTTTAGAAGTTGTG-CTAATCTTTTGACACCTAAA 303
Query 661 CTAAAGGCGAT 671
||||| |||||
Sbjct 304 CTAAAAGCGAT 314
> Ahg897338 jgi|Araly1|897338|Al_scaffold_0005_1304
Length=537
Score = 152 bits (82), Expect = 5e-36
Identities = 225/290 (78%), Gaps = 25/290 (9%)
Strand=Plus/Plus
Query 627 TCTTACAAGTTGTGGCAATCTTTTAACACCTAAACTA-AAGGCGATATGG-AAGCAAAGG 684
||||| |||||||| | ||||||| ||||||||| || || ||| ||| || | ||||
Sbjct 33 TCTTAGAAGTTGTGCCTATCTTTTGACACCTAAAGTACAA-AAGATGTGGCAA-CGAAGG 90
Query 685 ATCGAAGAGGAGTTGATTCTTGTA-GCGGAGAGAGTTT-ATTGTCCAAACCCGAGGTGCT 742
||| || | || | ||||| | | | ||| ||| ||| |||| ||||| || || ||||
Sbjct 91 ATCAAACAAGACTCGATTCCTCAATG-GGACAGA-TTTCATTGCCCAAAACCAAGTTGCT 148
Query 743 CGGGATT-AATGTCGAAAACCGAGCTCTCT-ACATC-AACTGAAGAAGATGTAAGTACTA 799
| || || ||||||||||| |||||| | | ||| | | |||||||| | ||| ||
Sbjct 149 C-GGCTTGGATGTCGAAAACTAAGCTCTTTGA-ATCTATC-GAAGAAGA-GGGAGT--TA 202
Query 800 GGACTTGTTG-TGTTAAATG-CGGTGA-ACCCTTTTGCATCAACTGCAAAGTTCCGTGGC 856
||| ||||| | ||||||| | || | ||||||||||||||| ||||||||||||||||
Sbjct 203 GGAGATGTTGCT-TTAAATGTC-GT-ACACCCTTTTGCATCAATTGCAAAGTTCCGTGGC 259
Query 857 ATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGT-CCAAATCCTAC 905
||||||||||||| ||||| || |||| || ||| | | ||||| |||||
Sbjct 260 ATAGTAACTTGTCGTGCGACGAATACAGGA-ATTCGCTTCCAAAGCCTAC 308
> Ahg937218 jgi|Araly1|937218|scaffold_501409.1
Length=633
Score = 147 bits (79), Expect = 2e-34
Identities = 132/156 (85%), Gaps = 9/156 (6%)
Strand=Plus/Plus
Query 849 TCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACAAA 908
||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 355 TCCGTGGCATAGTGACTTGTCGTGCGACGATTACAAGAGATTGGGTCCAAATCCTACTAA 414
Query 909 A-A--ATGATATAAAGCTAAAAGTTTTGGCAAATCAGCAAA-A-GTGGAGTCAATGTGCA 963
| ||||||||||| | |||| ||| |||||| || ||| | |||| ||||||||| |
Sbjct 415 TGATGATGATATAAAGTTCAAAGCTTTAGCAAAT-AG-AAATATGTGGCGTCAATGTGGA 472
Query 964 AAGTGCCAACACATGATTGCACGTATC-GAAGGATG 998
|||||| || ||||||| | |||| || ||||||||
Sbjct 473 AAGTGCAAAAACATGATCGAACGT-TCAGAAGGATG 507
> Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435
Length=411
Score = 110 bits (59), Expect = 3e-23
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 840 CTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAA 899
|||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 332 CTGCAAAGTTGCGTGGCATAGTAACTTGTCTTGCGACGATTACAAGAGATTGGGTCCAAA 391
Query 900 TCCTACAAAAAATGATATAA 919
||||| | || ||| |||||
Sbjct 392 TCCTAGAGAAGATGTTATAA 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5