BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43790.3
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484816 jgi|Araly1|484816|fgenesh2_kg.5__808__AT3G43790.1 2316 0.0
> Ahg484816 jgi|Araly1|484816|fgenesh2_kg.5__808__AT3G43790.1
Length=1566
Score = 2316 bits (1254), Expect = 0.0
Identities = 1413/1488 (95%), Gaps = 18/1488 (1%)
Strand=Plus/Plus
Query 30 ATCAACCAGTCCGACTCAGTGGTTCCGATCATGGCCGATGATGAGTCAAGAACCATCCTG 89
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATCAACCACTCCGACTCAGTGGTTCCGATCATGGCCGATGATGAGTCACGTACCATCCTG 60
Query 90 TTGGAGAAGAACGAAGACTGCCCTGGCTGTATCATTGATCGAACCAAGCAACAGCAACGA 149
||||||||||||||||| |||||||| ||| ||||||||||||| |||||| | |||||
Sbjct 61 TTGGAGAAGAACGAAGATTGCCCTGGTTGTGTCATTGATCGAACTAAGCAAGATCAACGT 120
Query 150 GGCGTTCCTTACTTGCACCTCTCCTTCATCTGGCTCGTGTCACTCTGCACTGCTCTTCCA 209
||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 GGCGTCCCTTACTTCCACCTCTCCTTCATCTGGCTCGTCTCACTCTGCACCGCTCTTCCA 180
Query 210 ATATCTTCACTGTTTCCATATATTTATTTCATGATCAGAGACTTCCATATAGCAAAACAA 269
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 181 ATATCTTCACTGTTTCCATATCTTTATTTCATGATCAGAGACTTCCATATTGCAAAACAA 240
Query 270 GAAGAAGATATTGGTTTCTATGCTGGTTTTGTTGGATCATCATTCATGATTGGAAGAGCT 329
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 GAAGAAGATATTGGTTTCTATGCTGGTTTTGTTGCATCATCATTCATGATTGGAAGAGCT 300
Query 330 TTGACATCTATTTTCTGGGGGAAATTAGCTGATCGTTATGGTCGCAAACCTATTATTCTC 389
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TTGACATCTATTTTCTGGGGGAAATTAGCTGATCGATATGGTCGCAAACCTATTATTCTG 360
Query 390 ATTGGGACATTCTCAGTGATCATATTCAATACCCTCTTTGGTCTAAGCACAAGTTTCTGG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGGGACATTCTCAGTGATCATATTCAATACCCTCTTTGGTCTAAGCACAAGTTTCTGG 420
Query 450 CTTGCAATTTCCGTTAGATTTCTTCTTGGCTGCTTCAATTGTTTACTTGGAGTTATAAGA 509
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 421 CTTGCAATTTCCGTTAGATTTCTTCTCGGCTGCTTCAATTGTCTACTTGGAGTTATAAGG 480
Query 510 GCATATGCTTCAGAAGTCGTTAGCGAAGAGTATAACGCTCTTAGTCTTTCTGTCGTGAGT 569
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 481 GCATATGCTTCGGAAGTCGTTAGTGAAGAGTATAACGCTCTTAGTCTTTCTGTTGTGAGT 540
Query 570 ACATCAAGAGGTATAGGATTGATACTAGGTCCTGCTATTGGAGGTTATCTTGCTCAGCCT 629
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 ACATCGAGAGGTATAGGATTGATACTAGGTCCTGCTATTGGAGGCTATCTTGCTCAGCCT 600
Query 630 GCAGAAAAGTACCCAAATATATTTTCCCAGAGTTCAGTTTTTGGGAGGTTTCCATATTTT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAGAAAAGTACCCAAATATATTTTCCCAGAGTTCAGTTTTTGGGAGGTTTCCATATTTT 660
Query 690 CTGCCGAGCTTAGTTATATCCGTCTATGCTACTGCGGTTCTCATCGCTTGCTGGTGGCTT 749
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 661 CTGCCGAGCTTAGTTATATCAGTCTATGCTACTGGGGTTCTCATCGCCTGCTGGTGGCTT 720
Query 750 CCTGAAACTCTTCATACACGTTGTAGAATTGCACAAGGGAGACTTAATCCAACAGAGCTA 809
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 CCTGAAACACTTCATACCCGTTGTAGAATTGCACAAGGGAGACTTAATCCAACTGAGCTA 780
Query 810 AACGATGATGAAAGTAGAGGAGGAGGACTTGATGAACAGAAAATAATTAATAAGCCAAGT 869
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 781 AACGATGATGAAAGCAGAGGAGGAGGACTTGATGACCAGAAAATAATTAGTAAGCCAAGT 840
Query 870 CTCTTGAGGAATCGTCCATTGATGGCTATCATCATTGTTTATTGTGTTTTTTCCCTCCAA 929
|||||||| |||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 841 CTCTTGAGAAATCGTCCATTGATGGCTATCATCATCGTGTATTGTGTCTTTTCCCTTCAA 900
Query 930 GAGATAGCATACAATGAGATATTCTCACTCTGGGCTGTTAGTGACCGAAGCTATGGAGGA 989
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGATAGCTTACAATAAGATATTCTCACTCTGGGCTGTTAGTGACCGAAGCTATGGAGGA 960
Query 990 TTGAGCTTCTCATCTCAAGATGTTGGTGAAGTTTTAGCTATATCAGGACTTGGGCTTCTG 1049
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 961 TTGAGCTTCTCATCTCAAGATGTTGGTGAAGTTTTAGCTATATCAGGATTTGGGCTTCTG 1020
Query 1050 GTGTTTCAACTTTTGGTATACCCGCCATTGGAGAAATCCGTGGGACTCCTTGCGGTTATA 1109
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||||
Sbjct 1021 GTGTTTCAACTTTTGGTATACCCGCCGTTGGAGAAGTCCGTTGGACTCCTTGCGATTATA 1080
Query 1110 CGTCTTTCTGCGGTATTGCTGATACCGCTGCTTTCGTGTTACCCCTATATAGCTTTGCTT 1169
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 CGTCTTTCTGCGGTATTGCTGATACCTCTGCTTTCGTGTTACCCCTATATAGCTTTGCTT 1140
Query 1170 TCTGGGGTGACTCTCCATTTGGTGATAAATTGTGCATCCATCATAAAAAACGCTTTGTCT 1229
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCTGGGGTGACCCTCCATTTGGTGATAAATTGTGCATCCATCATAAAAAACGCTTTGTCA 1200
Query 1230 ATCTCACTTGTCACAGGACTGTTTATCATGTTGAACAAAGCTGTGCCTCAGAATCAGAGA 1289
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 ATCTCACTTGTCACAGGACTGTTTATCATGTTGAACAAAGCCGTGCCTCAGAATCAGAGA 1260
Query 1290 GGTGCTGCTAATGGCATTTCTATGACCGCGATGTCTGTTTTCAAATCATTTGGCCCTGCC 1349
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 GGTGCTGCTAATGGCATTTCTATGACCGCAATGTCTGTTTTCAAATCATTTGGCCCTGCC 1320
Query 1350 GGTGGAGGGGTCTTATTCTCATGGGCGCAAAAGAGACAAGACGCTACATTCCTTCCAGGT 1409
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 GGTGGAGGGGTCTTATTCTCATGGGCGCAAAAGAGACAAGACGCTACTTTCCTTCCAGGT 1380
Query 1410 CAAATTTTTGCACCATGTGATGAGATGGTGTTCTTGGTGTTGAATTTGGTACAGCTCGTA 1469
| || | | || ||||||||||||||||||| |||||||||||||||
Sbjct 1381 ---------G-AC---G--A-GA--TGGTGTTCTTGGTGTTGAACTTGGTACAGCTCGTA 1422
Query 1470 GGATTGATACTAACGTTCATACCTTACATTTCCCAAATCCAGTAAAAG 1517
|||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1423 GGATTGATTCTAACGTTCGTACCTTACATTTCCCAAATCCAGTAAAAG 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66467477525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5