BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43810.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1 1103 0.0
Ahg938640 jgi|Araly1|938640|scaffold_502831.1 497 4e-140
Ahg481582 jgi|Araly1|481582|fgenesh2_kg.4__642__AT2G27030.3 459 2e-128
> Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1
Length=750
Score = 1103 bits (597), Expect = 0.0
Identities = 710/761 (93%), Gaps = 21/761 (3%)
Strand=Plus/Plus
Query 13 GAACATTCACTCTCACGCGCTTCAACTTTCTCCAGAAACAAG-AAAATATCACAGCAAAA 71
||||||||||||||||||||||||||||||| |||||||||| ||||| |||| || |||
Sbjct 1 GAACATTCACTCTCACGCGCTTCAACTTTCT-CAGAAACAAGAAAAAT-TCACTGC-AAA 57
Query 72 ATTTTCTCGAGAAAATCCGAAGAAGACaaaaaaaaTGGCGGATCAGCTAACCGATGACCA 131
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 58 ATTTTCTCGAGAAAATCCGAAG--CA-AAAAAAAATGGCGGATCAGCTTACCGATGACCA 114
Query 132 GATCTCCGAGTTCAAGGAAGCTTTTAGCCTATTCGACAAAGACGGAGATGGTTGTATCAC 191
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 115 GATCTCCGAGTTCAAGGAAGCTTTCAGCCTCTTCGACAAAGACGGAGATGGTTGCATCAC 174
Query 192 CACAAAGGAGCTTGGGACTGTGATGAGATCACTTGGGCAGAACCCGACAGAAGCCGAGCT 251
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 175 TACAAAGGAGCTTGGGACTGTGATGAGATCACTCGGGCAGAACCCAACAGAAGCTGAGCT 234
Query 252 CCAGGACATGATCAACGAAGTGGATGCAGACGGGAACGGGACAATAGATTTCCCAGAGTT 311
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 235 TCAGGACATGATCAACGAAGTAGATGCAGATGGGAACGGGACAATAGATTTCCCGGAGTT 294
Query 312 CCTGAACCTAATGGCACGTAAGATGAAAGACACTGATTCAGAGGAAGAGCTTAAGGAAGC 371
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 295 CCTGAACCTTATGGCACGGAAGATGAAAGACACTGATTCAGAGGAGGAGCTTAAGGAAGC 354
Query 372 CTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCGGCTGAGCTTCGTCACGT 431
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 355 CTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCAGCTGAGCTTCGTCACGT 414
Query 432 GATGACAAATCTTGGGGAGAAGTTGACGGATGAGGAAGTCGATGAGATGATCCGAGAGGC 491
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 415 GATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAAGTCGATGAGATGATCCGAGAGGC 474
Query 492 TGACGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAA 551
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGATGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAA 534
Query 552 GTGAGATTCTTCTTATCCCTCGAAATCCTAAG-CATGTTT-TTC-TTTTACATCTTTAAA 608
|||||| ||||||||||||||||||||| ||| | ||||| || |||| | ||||||||
Sbjct 535 GTGAGAATCTTCTTATCCCTCGAAATCCCAAGTC-TGTTTATTTATTTT-CGTCTTTAAA 592
Query 609 ACTGAGAAAAGTAATTTATTGAACCAAAAGAAACAGAGAGATTTGCTTCcttgtttgttt 668
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 593 -CTGAGAAAAGTAATTTATTGAACCAAAAGAAACAGAGAGATTTGCTTCGTTGTTTGTTT 651
Query 669 tgttgatcgtgattttttggtaacgttgcttcttctttgcctt--t-t--ggttttgttA 723
||||| |||| ||||||||||||||||||||||||||| |||| | | ||||||||||
Sbjct 652 TGTTGGTCGTAATTTTTTGGTAACGTTGCTTCTTCTTTACCTTCATCTTCGGTTTTGTTA 711
Query 724 TTGTCCGTGACGTTTGAACTCATAA-TTTGCTTTAGTCTCT 763
| |||||||| ||||||||||| || |||||||||||||||
Sbjct 712 T-GTCCGTGAAGTTTGAACTCA-AAGTTTGCTTTAGTCTCT 750
> Ahg938640 jgi|Araly1|938640|scaffold_502831.1
Length=575
Score = 497 bits (269), Expect = 4e-140
Identities = 402/467 (86%), Gaps = 6/467 (1%)
Strand=Plus/Plus
Query 92 AGAAGACaaaaaa-aaTGGCGGATCAGCTAACCGATGACCAGATCTCCGAGTTCAAGGAA 150
|||||| |||||| ||||||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct 8 AGAAGA-AAAAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAA 66
Query 151 GCTTTTAGCCTATTCGACAAAGACGGAGATGGTTGTATCACCACAAAGGAGCTTGGGACT 210
||||| ||| |||||||||| || || |||||||| || ||||| |||||||||||||||
Sbjct 67 GCTTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTTGGGACT 126
Query 211 GTGATGAGATCACTTGGGCAGAACCCGACAGAAGCCGAGCTCCAGGACATGATCAACGAA 270
|||||| | || ||||| || ||||| || ||||| ||||| || ||||||||||| |||
Sbjct 127 GTGATGCGTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGATCAATGAA 186
Query 271 GTGGATGCAGACGGGAACGGGACAATAGATTTCCCAGAGTTCCTGAACCTAATGGCACGT 330
||||| || || || ||||| || || ||||||||||||||| ||||||| ||||| |||
Sbjct 187 GTGGACGCTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTCATGGCTCGT 246
Query 331 AAGATGAAAGACACTGATTCAGAGGAAGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAG 390
|||||||| ||||| || || ||||||||||| |||||||| ||| ||||||||||||||
Sbjct 247 AAGATGAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTTTGACAAG 306
Query 391 GACCAGAACGGTTTCATCTCGGCGGCTGAGCTTCGTCACGTGATGACAAATCTTGGGGAG 450
||||||||||||||||| || || |||||||||||||| ||||||||||| ||||| |||
Sbjct 307 GACCAGAACGGTTTCATTTCAGCCGCTGAGCTTCGTCATGTGATGACAAACCTTGGTGAG 366
Query 451 AAG-TTGACGGATGAGGAAGTCGATGAGATGATCCGAG-AGGCTGACGTCGATGGTGATG 508
||| || || ||||| ||||| |||||||||||| || | ||||| || ||||||||||
Sbjct 367 AAGCTT-ACTGATGAAGAAGTTGATGAGATGATCA-AGGAAGCTGATGTTGATGGTGATG 424
Query 509 GTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAGTGA 555
||||||| |||||||||||||| || || ||||||||||| ||||||
Sbjct 425 GTCAGATTAACTATGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGA 471
> Ahg481582 jgi|Araly1|481582|fgenesh2_kg.4__642__AT2G27030.3
Length=714
Score = 459 bits (248), Expect = 2e-128
Identities = 387/455 (85%), Gaps = 6/455 (1%)
Strand=Plus/Plus
Query 101 aaaaaaTGGCGGATCAGCTAACCGATGACCAGATCTCCGAGTTCAAGGAAGCTTTTAGCC 160
|||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||
Sbjct 61 AAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAAGAAGCTTTTAGCC 120
Query 161 TATTCGACAAAGACGGAGATGGTTGTATCACCAC-AAAGGAGCTTGGGACTGTGATGAGA 219
||||||||||||||||||||||||| ||||| || |||| |||| || || |||||||||
Sbjct 121 TATTCGACAAAGACGGAGATGGTTGCATCACGACGAAAG-AGCTAGGAACAGTGATGAGA 179
Query 220 TCACTTGGG-CAGAACCCGACAGAAGCCGAGCTCCAGGACATGATCAACGAAGTGGATGC 278
||| || || || || || |||||||| ||| | || || ||||| |||||||| |||||
Sbjct 180 TCA-TTAGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGATGC 238
Query 279 AGACGGGAACGGGACAATAGATTTCCCAGAGTTCCTGAACCTAATGGCACGTAAGATGAA 338
|| || ||||| || ||||| ||||| ||||| || ||||| ||||| || ||||||||
Sbjct 239 TGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTCAACCTTATGGCTCGGAAGATGAA 298
Query 339 AGACACTGATTCAGAGGAAGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGAA 398
||||||||| || || |||||||| || ||||| ||||||||||| || |||||||||||
Sbjct 299 AGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAGAA 358
Query 399 CGGTTTCATCTCGGCGGCTGAGCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGTTGA 457
||||||||||||||| || ||| || | || || ||||| |||||||| |||||||| |
Sbjct 359 CGGTTTCATCTCGGCCGCGGAG-TTAAGACATGTTATGACTAATCTTGGTGAGAAGTTAA 417
Query 458 CGGATGAGGAAGTCGATGAGATGATCCGAGAGGCTGACGTCGATGGTGATGGTCAGATCA 517
| ||||| ||||| |||||||||||| ||| ||||| || ||||| |||||||||||||
Sbjct 418 CTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGATCA 477
Query 518 ACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAG 552
| ||||||||||| |||||||| ||||||||||||
Sbjct 478 ATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5