BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G43826.1 Length=756 Score E Sequences producing significant alignments: (Bits) Value Ahg895109 jgi|Araly1|895109|Al_scaffold_0006_3105 167 1e-40 > Ahg895109 jgi|Araly1|895109|Al_scaffold_0006_3105 Length=825 Score = 167 bits (90), Expect = 1e-40 Identities = 109/118 (92%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 277 AGTA-AATCACTAACTATATAATAATTGTCTTTACGGGTGGCGATGAATTGGAAGAGAAC 335 |||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 403 AGTAGAATCGCTAACTATATGATAATTGTCTTCACGGGTGGCGATGAATTGGAAGAGAAC 462 Query 336 GAAGAGACGTTGGAGGATTATTTGACTCAATAATGTCAACAATTCCTTAACGTGAGTG 393 |||||||||||||||||||||||||||||| | |||| ||||||||| || ||||||| Sbjct 463 GAAGAGACGTTGGAGGATTATTTGACTCAAGAGTGTCCACAATTCCTAAAAGTGAGTG 520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27867852327 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5