BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G43826.1

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895109 jgi|Araly1|895109|Al_scaffold_0006_3105                    167    1e-40


> Ahg895109 jgi|Araly1|895109|Al_scaffold_0006_3105
Length=825

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 109/118 (92%), Gaps = 1/118 (1%)
 Strand=Plus/Plus

Query  277  AGTA-AATCACTAACTATATAATAATTGTCTTTACGGGTGGCGATGAATTGGAAGAGAAC  335
            |||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  403  AGTAGAATCGCTAACTATATGATAATTGTCTTCACGGGTGGCGATGAATTGGAAGAGAAC  462

Query  336  GAAGAGACGTTGGAGGATTATTTGACTCAATAATGTCAACAATTCCTTAACGTGAGTG  393
            |||||||||||||||||||||||||||||| | |||| ||||||||| || |||||||
Sbjct  463  GAAGAGACGTTGGAGGATTATTTGACTCAAGAGTGTCCACAATTCCTAAAAGTGAGTG  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27867852327


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5