BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G43833.1 Length=974 Score E Sequences producing significant alignments: (Bits) Value Ahg896961 jgi|Araly1|896961|Al_scaffold_0005_927 176 3e-43 Ahg936812 jgi|Araly1|936812|scaffold_501003.1 156 3e-37 > Ahg896961 jgi|Araly1|896961|Al_scaffold_0005_927 Length=159 Score = 176 bits (95), Expect = 3e-43 Identities = 120/132 (91%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 639 ATCGTCATTGAAGTTCCCCTTTTCGATGGAATTGTCTGTCGTAATGTCGCATTCGCATTG 698 |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 1 ATCGTCATTGAAGTTCCCCTTTTCGATGGATTTGTCCGTCGTAATGTCACATTCGCGTTG 60 Query 699 CTAGCGAAAGAACGTAGCTTGAAGGCCTCCTTGGAAGCAAAGGATGGTGCTAGAA-TCGG 757 |||||| ||| || ||||||||||||||||||||||||||||||||||| ||| || | Sbjct 61 CTAGCGGAAGTTTGTGGCTTGAAGGCCTCCTTGGAAGCAAAGGATGGTGCT-GAAATCAG 119 Query 758 TTGTCTTGGTTT 769 |||||||||||| Sbjct 120 TTGTCTTGGTTT 131 > Ahg936812 jgi|Araly1|936812|scaffold_501003.1 Length=514 Score = 156 bits (84), Expect = 3e-37 Identities = 96/102 (94%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 555 AGATTTATTGTAGGGAAGAAGATCTTCTGCGGTGAAGCTAGGCTCACTTTCGCATCTCTA 614 |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 411 AGATTTATTGTAGGGAAGAAGATCTTCTTCGGTGAAGCTAGGCTCACTTTCTCATCTCTT 470 Query 615 TGTGATATGGATTGGTGGTTCTCGATCGTCATTGAAGTTCCC 656 |||||||||| | ||||||||| ||||||||||||||||||| Sbjct 471 TGTGATATGGGTCGGTGGTTCTAGATCGTCATTGAAGTTCCC 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36178648233 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5