BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G43833.1

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896961 jgi|Araly1|896961|Al_scaffold_0005_927                     176    3e-43
  Ahg936812 jgi|Araly1|936812|scaffold_501003.1                        156    3e-37


> Ahg896961 jgi|Araly1|896961|Al_scaffold_0005_927
Length=159

 Score =  176 bits (95),  Expect = 3e-43
 Identities = 120/132 (91%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  639  ATCGTCATTGAAGTTCCCCTTTTCGATGGAATTGTCTGTCGTAATGTCGCATTCGCATTG  698
            |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||
Sbjct  1    ATCGTCATTGAAGTTCCCCTTTTCGATGGATTTGTCCGTCGTAATGTCACATTCGCGTTG  60

Query  699  CTAGCGAAAGAACGTAGCTTGAAGGCCTCCTTGGAAGCAAAGGATGGTGCTAGAA-TCGG  757
            |||||| |||   || ||||||||||||||||||||||||||||||||||| ||| || |
Sbjct  61   CTAGCGGAAGTTTGTGGCTTGAAGGCCTCCTTGGAAGCAAAGGATGGTGCT-GAAATCAG  119

Query  758  TTGTCTTGGTTT  769
            ||||||||||||
Sbjct  120  TTGTCTTGGTTT  131


> Ahg936812 jgi|Araly1|936812|scaffold_501003.1
Length=514

 Score =  156 bits (84),  Expect = 3e-37
 Identities = 96/102 (94%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  555  AGATTTATTGTAGGGAAGAAGATCTTCTGCGGTGAAGCTAGGCTCACTTTCGCATCTCTA  614
            |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| 
Sbjct  411  AGATTTATTGTAGGGAAGAAGATCTTCTTCGGTGAAGCTAGGCTCACTTTCTCATCTCTT  470

Query  615  TGTGATATGGATTGGTGGTTCTCGATCGTCATTGAAGTTCCC  656
            |||||||||| | ||||||||| |||||||||||||||||||
Sbjct  471  TGTGATATGGGTCGGTGGTTCTAGATCGTCATTGAAGTTCCC  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36178648233


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5