BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43850.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897140 jgi|Araly1|897140|Al_scaffold_0005_1106 693 0.0
> Ahg897140 jgi|Araly1|897140|Al_scaffold_0005_1106
Length=660
Score = 693 bits (375), Expect = 0.0
Identities = 575/665 (86%), Gaps = 39/665 (6%)
Strand=Plus/Plus
Query 1 ATGTTTACTGCCATTGACAAGATTGATCGGACTTTCACGGTGGATCAAGAATTTGCTTGC 60
||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTTTAGGGTCATTGACAAGAGCGATCGGACTTTCACGGCGGATCAAGAATTTGCTTGC 60
Query 61 TTATCGT---CGTCGACGTCTTCTGATTCGATCGGGGAGAACAGTGACGACGATGAAGGT 117
||||||| |||| || ||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 61 TTATCGTCGACGTCTTCGACTTTTGATTCGATCGGGAAGAACAGTGAGGACGATGAAGGT 120
Query 118 GGAGAGAATGAGATTGAGTCTTCTTACAATGGTCCTCTTGATATGATGGAATCTCTTGAA 177
||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 121 GGAGAGAATGAGATTGAGTCTGCTTACAAAGGTCCTCTTGATATGATGGAGTCTCTTGAA 180
Query 178 GAAGCCTTGCCCATCAAGAGAGCTATATCAAAGTTTTACAAAGGGAAGTCAAAGTCGTTC 237
|||||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||
Sbjct 181 GAAGCCTTGCCCATCAAGAGAGGGATATCGAAGTTTTACAAAGGAAAGTCGATGTCGTTC 240
Query 238 ATGAGCTTATCGGAAACTTCATCTTTGCCGGTGAAGGACTTGACGAAACCGGAGAATCTT 297
| ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |
Sbjct 241 ACGAGCTTATCGGAAACAGCATCTTTGCCGGTGAAGGATTTGACGAAACTGGAGAATCCT 300
Query 298 TATAGTCGTCGGAGGAGGAATCTTCTCAGTCACCGGATATGTAGTCGTGGTGGGATCTCA 357
|||||||| ||| ||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 301 TATAGTCGCCGGCGGAGGAATCTTCTCAGTCATCGTATACGTAGTCGTGGTGGGATCTCG 360
Query 358 AAGAAGCCATTCAAGAGTGTTTTAGCG---------ATG---A---GTCAACGAGAAGGA 402
||||| || ||||||||||||||||| ||| | ||||| ||||||||
Sbjct 361 AAGAAACCGGTCAAGAGTGTTTTAGCGGTGGCCGTGATGGCGATATGTCAAAGAGAAGGA 420
Query 403 GACTCTTCTTC--C-TCCGGTGATGATTCTCTTCCGACTCTAAGGCAGCATCATAAGACT 459
||||||||||| | ||||||||||||||||||||| ||| || || ||||||||| |
Sbjct 421 GACTCTTCTTCTTCCTCCGGTGATGATTCTCTTCCGCCTCCGGGGAAGTATCATAAGAAT 480
Query 460 CTTACGCCGAGGCTGAGAAAAGGGAGT-TTTG-AAGCTTTTACATTTCAAGACAAAAGCG 517
|| | ||||||| |||||| ||| || |||| |||||||||||||||||||||||||||
Sbjct 481 CT--C-CCGAGGCAGAGAAA-GGG-GTCTTTGGAAGCTTTTACATTTCAAGACAAAAGCG 535
Query 518 AGACGGATGAGGATCACAAGAAGGCCACCAAAGGAGCCACAAAGCCTGTGAATC-AA-A- 574
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 536 AGAAGGATGAGGATCGCAAGAAGGCCACCAAAGGAGCCACAAAGCCTGTGAATCCAATAG 595
Query 575 ----C---C-TGGTCAAGCTCTGGTCACAGTATAAAGACAAGGCAATGGCCAAGATCAAC 626
| | |||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 596 GGATCAAACCTGGTCAAGCTCTGGTCACAGTACAGAGACAAGGCAATGGCCATGATCAAG 655
Query 627 AATAG 631
|||||
Sbjct 656 AATAG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5