BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43860.1
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484821 jgi|Araly1|484821|fgenesh2_kg.5__813__AT3G43860.1 3066 0.0
> Ahg484821 jgi|Araly1|484821|fgenesh2_kg.5__813__AT3G43860.1
Length=1924
Score = 3066 bits (1660), Expect = 0.0
Identities = 1844/1931 (95%), Gaps = 20/1931 (1%)
Strand=Plus/Plus
Query 16 aaaacaagaaaaaacgaaaagcatgcaattgtttttcgttttttgttgaaacaaaaaaca 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAGAAAAAACGAAAAGCATGCAATTGTTTTTCGTTTTTTGTTGAAACAAAAAACA 60
Query 76 aacttaacttcaccaaaaaaactac--agaaaaaaaaaGATTCAGTTTCCTTTTCTTTGT 133
||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 AACAGAACTTCA-CAAAAAAA-TACAGAGAAAAAAAAAGATTCAGTTTCCTTTTCTTTGT 118
Query 134 CTCCACTTCTTATATAAGAGTTGGGCATTTTTATTACAAACATAACTTTTGAAATCATGG 193
||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||
Sbjct 119 TTCCACTTCTTATATAAGAGTT-GGCATTTTTATTACAAACATTACATTTGAAATTATGG 177
Query 194 CTAA-T-T----ATAAAGGAAGAGGAAATGTTATGA-TACGGAG-CATGTTATTGGGTCT 245
||| | | |||||||||||||||||||| ||| || || | ||| || ||||||||
Sbjct 178 GTAATTATGGGGATAAAGGAAGAGGAAATGTTGTGATTA-GG-GCCATATTGTTGGGTCT 235
Query 246 CTATGGCATCATAAACATTGTGTGTGTCAATGGTACTTTCATAAACTACAAAGATGCTTT 305
|||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 236 CTATGGAATCATAAGCATTGTTTGTGTCAATGGTACTAACATAAACTACAAAGATGCTTT 295
Query 306 AACCAAATCCCTCATCTTCTTGGAGGCTCAAAGATCAGGCAAACTCCCTCCTAATAATAG 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 296 AACCAAATCCCTCATCTTCTTGGAGGCTCAAAGATCAGGCAAACTCCCTCCTAACAATAG 355
Query 366 GGTTCCATGGAGAGGTGACTCTGCTCTCGACGATGGCAAACTCGTAAATGTGGACTTGTC 425
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 GGTTCCATGGAGAGGTGATTCTGCTCTCGACGATGGCAAACTCGTAAATGTGGATTTGTC 415
Query 426 TGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGAT 485
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 416 GGGAGGGTACTATGACGCAGGAGACAATGTAAAGTATGGTCTTCCAATGGCGTTTACGAT 475
Query 486 CACAACGCTTGCTTGGTCCACAATTACCTACGAGAAAGAACTTCGAGCCACGGGAGAGCT 545
|||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct 476 CACAACGCTTGCTTGGTCTACCATTACCTATGAGAAAGAACTCCGAGCCACGGGAGAGCT 535
Query 546 CGAAAACGCTCGTGCTGCTATCCGTTGGGGTACGGATTATTTCCTCAAATGTGCTTCTCG 605
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 CGAAAACGCTCGTGCTGCTATCCGTTGGGGTACAGATTATTTCCTCAAATGTGCTTCTCG 595
Query 606 CAAGAACCGCCTCTATGTTCAGGTTGGTGATCCAAACGCGGACCACCAGTGCTGGGCGAG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAAGAACCGCCTCTATGTTCAGGTTGGTGATCCAAACGCGGACCACCAGTGCTGGGCGAG 655
Query 666 ACCTGAGAACATGAAGACACCAAGGACGGTGTTGGAGATAAGCGATAAAGTTCCAGGAAC 725
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACCCGAGAACATGAAGACGCCAAGGACGGTGTTGGAGATAAGCGATAAAGTTCCAGGAAC 715
Query 726 CGAGATCGCGGCGGAAGCCGCTGCTGCATTCGCCGCTTCCTCCATCGTTTTCCGCCATGT 785
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 CGAGATCGCTGCGGAAGCCGCCGCTGCATTCGCCGCTTCCTCCATCGTTTTCCGCCATGT 775
Query 786 CGACCACAAATATGCACGCCGGCTTCTCAACAAAGCCAAATTGCTTTTCAAGCTAGCCAA 845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGACCACAAATATGCACGCCGGCTTCTCAACAAAGCCAAATTGCTTTTCAAGCTAGCCAA 835
Query 846 AAGCCACAAGGGTACATACGATGGAGAATGCCCCTTCTATTGTTCTAACTCCGGTTACAA 905
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 836 AAGCCACAAGGGTACATACGATGGAGAATGCCCGTTTTATTGTTCTAACTCCGGTTACAA 895
Query 906 TGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCT 965
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 896 TGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATGATTTGTACCT 955
Query 966 TAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCGAATTCAGCTGGGATCTCAA 1025
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 956 TAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTCGCTGAATTCAGCTGGGATCTCAA 1015
Query 1026 GTACGCTGGTGCGCAGATCCTCATCACCAAGTTGATCTTCGAAGGC-CACAAAGGACTTG 1084
|||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 1016 ATACGCTGGTGCGCAGATCCTCATCACTAAGTTGATCTTCGAAGGCGCA-AAAGGACTTG 1074
Query 1085 ATCTATACAAACAACAAGCCGATAGTTTTGTATGCTCTAA-CCTCCCTGGCAGTCCTTAC 1143
||||||||||||||||||| |||||||||||||||||||| | |||| || |||||||||
Sbjct 1075 ATCTATACAAACAACAAGCAGATAGTTTTGTATGCTCTAATCTTCCC-GGAAGTCCTTAC 1133
Query 1144 CACCAAGTCTTCACTACCCCAGGTGGTATGATTCACTTGAGGGATGGTGCCAACAGTCAA 1203
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1134 CACCAAGTTTTTACTACCCCAGGTGGTATGATTCACTTGAGGGATGGAGCCAACAGTCAA 1193
Query 1204 TATGTCACCGCCACCGCCTTCTTGTTCTCGGCCTACGCTGATATACTACAGAAACACAAC 1263
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1194 TATGTCACCGCCACCGCCTTCTTGTTCTCAACCTACGCTGATATACTACAGAAACACAAC 1253
Query 1264 CAAAAGATCTCTTGCGGTAGCCACCAATTCGATTCAACACACCTCATGGCTTTCGCTAAA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CAAAAGATCTCTTGCGGTAGCCACCAATTCGATTCAACACACCTCATGGCTTTCGCTAAA 1313
Query 1324 AAACAGATTGACTACATACTAGGGCATAACCCACAAGGAAGATCGTACATGGTTGGGTTC 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AAACAGATTGACTACATACTAGGGCATAACCCACAAGGAAGATCGTACATGGTTGGGTTC 1373
Query 1384 GGACCAAACCCACCAAAGCAAGCCCATCACAGAGGAGCCTCAGTGCCCATGCATGAAGCC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GGACCAAACCCACCAAAGCAAGCCCATCACAGAGGAGCCTCAGTGCCCATGCATGAAGCC 1433
Query 1444 AACGCGCCGCTAAGCTGCCCATTGAGCTTCGTGAAATGGTACAACAAGAACGTACCTAAC 1503
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AACGCGCCGTTAAGTTGCCCATTGAGCTTCGTGAAATGGTACAACAAGAACGTACCTAAC 1493
Query 1504 GCTAACGAGCTCACCGGAGCCATTTTGGGAGGACCTGACCGTCAAGACAAATTCCAGGAT 1563
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1494 GCTAACGAGCTCACCGGAGCCATCTTGGGAGGACCTGACCGTCAAGACAAGTTCCAGGAT 1553
Query 1564 CTCCGATGGACCTCCGTGTACACAGAGCCTTGTACTTACATCAACTCTATCGCCGTTGGT 1623
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1554 CTCCGATGGACTTCCGTGTACACAGAACCTTGCACTTACATCAACTCTATCGCCGTTGGT 1613
Query 1624 GTTCTCGCTAAGCTCGCTGCGGCTTAGAGCCTTTTGTACCACATTCGAGACTACTTTGAT 1683
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GTTCTCGCCAAGCTCGCTGCGGCTTAGAGCCTTTTGTACCACATTCGAGACTACTTTGAT 1673
Query 1684 GAAAAGTATTCTTCTAGGGTTTCCCTTACCTACTATAATTGCATACACCTTTGTGGCAAT 1743
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1674 GAAA-GTATTCTTCTAGGGTTTCCCTTACCTACTAAAATTGCATACACCTGTGTGGCCAT 1732
Query 1744 GCAATGTAATTCTAtttttcatttttttttGCCTTTGTAGGTAGCTTTTTGGAATCATGT 1803
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1733 GCAATGTAATTCTATTTTTCATTTTCTTTTGCCTTTGTAGGTAGCTTTTTGGAATCATGT 1792
Query 1804 TTTCTCCAAAATATAAAATTGCATGGGCATAATAATAAGCTCTAGTGATTTGAAACAATA 1863
||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 1793 TTTCTCCAAAATATAAAATTGCATGGGTATAATAATAAGCCCTAATGATTTGAAACAATA 1852
Query 1864 ATTAAGCGAAATTAATGAATAGCCGGAATGATAATTCTCATTCCGTTTCACGTAGATTGT 1923
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1853 ATTAAGTGAAATTAATGAATAGCCGGAAGGATAAAACTCATTCCGTTTCACGTAGATTGT 1912
Query 1924 TGTTTTAAACT 1934
|||||||||||
Sbjct 1913 TGTTTTAAACT 1923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75228233875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5