BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43870.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913233 jgi|Araly1|913233|Al_scaffold_0001_3487 215 3e-55
Ahg916271 jgi|Araly1|916271|Al_scaffold_0008_1022 200 9e-51
Ahg891073 jgi|Araly1|891073|Al_scaffold_0007_3059 200 9e-51
Ahg913231 jgi|Araly1|913231|Al_scaffold_0001_3485 195 4e-49
Ahg891038 jgi|Araly1|891038|Al_scaffold_0007_3024 141 5e-33
> Ahg913233 jgi|Araly1|913233|Al_scaffold_0001_3487
Length=177
Score = 215 bits (116), Expect = 3e-55
Identities = 134/142 (94%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 368 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 73
Query 428 CTGAGCCACGAGGGCCAGCCTCCAC-CTATGAGGTTCTAGTCGTCACGAGGATGACTGGA 486
||||||||||||||||||||||||| | | |||||||| ||| |||||||||||||||||
Sbjct 74 CTGAGCCACGAGGGCCAGCCTCCACTC-AGGAGGTTCTGGTCATCACGAGGATGACTGGA 132
Query 487 CCTAACGATGT--GTATGTTTA 506
||||||||||| ||||| |||
Sbjct 133 CCTAACGATGTATGTATGGTTA 154
> Ahg916271 jgi|Araly1|916271|Al_scaffold_0008_1022
Length=168
Score = 200 bits (108), Expect = 9e-51
Identities = 130/140 (93%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60
Query 430 GAGCCACGAGGGCCAGCCTCCAC-CTATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488
||||||||| ||||||||||||| | | |||||||||||| |||||||||||||||||||
Sbjct 61 GAGCCACGACGGCCAGCCTCCACTCAA-GAGGTTCTAGTCATCACGAGGATGACTGGACC 119
Query 489 TAACGATGT--GTATGTTTA 506
||||||||| ||||| |||
Sbjct 120 TAACGATGTATGTATGGTTA 139
> Ahg891073 jgi|Araly1|891073|Al_scaffold_0007_3059
Length=177
Score = 200 bits (108), Expect = 9e-51
Identities = 125/133 (94%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429
||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 1 ATGGACCGACGGGTTAACAGCTGCTCAAGAACAGTTGACGAGCCCGGAATGGGAGTGTCT 60
Query 430 GAGCCACGAGGGCCAGCCTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488
||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||
Sbjct 61 GAGCCACGAGGGCCACCCTCCA-CTCAGGAGGTTCTAGTCGTCACGAGGATGACTGGACC 119
Query 489 TAACGATGTGTAT 501
||||||||| |||
Sbjct 120 TAACGATGTATAT 132
> Ahg913231 jgi|Araly1|913231|Al_scaffold_0001_3485
Length=174
Score = 195 bits (105), Expect = 4e-49
Identities = 120/127 (94%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 60
Query 430 GAGCCACGAGGGCCAGCCTCCAC-CTATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488
||||||||||||||| ||| ||| | | |||||||| ||| |||||||||||||||||||
Sbjct 61 GAGCCACGAGGGCCACCCTTCACTC-AGGAGGTTCTGGTCATCACGAGGATGACTGGACC 119
Query 489 TAACGAT 495
|||||||
Sbjct 120 TAACGAT 126
> Ahg891038 jgi|Araly1|891038|Al_scaffold_0007_3024
Length=201
Score = 141 bits (76), Expect = 5e-33
Identities = 89/95 (94%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 402 GGCTGACGAGCCCGGAATGGGAGTGTCTGAGCCACGAGGGCCAGCCTCCACCT-ATGAGG 460
|||||| |||||| |||||| ||||||||||||||||||||||||||||| || | ||||
Sbjct 3 GGCTGAAGAGCCCAGAATGGAAGTGTCTGAGCCACGAGGGCCAGCCTCCA-CTCAGGAGG 61
Query 461 TTCTAGTCGTCACGAGGATGACTGGACCTAACGAT 495
|||||||||||||||||||||||||||||||||||
Sbjct 62 TTCTAGTCGTCACGAGGATGACTGGACCTAACGAT 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5