BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43890.1
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926207 jgi|Araly1|926207|scaffold_201768.1 311 1e-83
> Ahg926207 jgi|Araly1|926207|scaffold_201768.1
Length=427
Score = 311 bits (168), Expect = 1e-83
Identities = 272/322 (84%), Gaps = 8/322 (2%)
Strand=Plus/Plus
Query 9 TTTGAAGGTTAACCTACCGTTCCACGAGCATCCATTAACGCCTGTGAAAATGGAGTCGAA 68
||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 77 TTTGAAGATAAACTTACCGTTCCACGAGCATCCATTAACGCCTGTGAAAATAGAGTCGAA 136
Query 69 GTGTGATTGGTGTGGAATCAAATTCATACACATATCTGATGGCTACCAA-TGTGATTCCT 127
|||||||||||| ||| ||||||||| | || ||||||||||| || || || || |
Sbjct 137 GTGTGATTGGTGCGGACTCAAATTCAAAGGTGTAACTGATGGCTAC-AAGTGCGACTCAT 195
Query 128 GT-TTCACTCCTTTATTCCACAAGACATGCGCCAACGATAAGAATATCGCCCACCCTTCT 186
|| || | ||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 196 GTGTTTT-TGGTTTATTCCACAAGACATGCGCCAACAATGAGAATATCCCCCACCCTTCT 254
Query 187 CAAGCGTGTGGCATCATTCTTTATCATACAGTGAATTT-TGATAGCGGCAAGTGGAGATG 245
||| ||||||||| |||||| |||||||| | ||||| | |||||||| || |||||||
Sbjct 255 CAAACGTGTGGCAACATTCTATATCATACTTTCAATTTCT-ATAGCGGCGAGAGGAGATG 313
Query 246 TGCAAAATGTGGAGAAAAGATCTACGATTCCT-TATTTTTTGTATGTAACGACTGTGTTT 304
|||| |||| |||| |||||||||||| || ||||||| |||||||||| |||||||
Sbjct 314 TGCAGGATGTAGAGAGAAGATCTACGATAGCTATATTTTTA-TATGTAACGATTGTGTTT 372
Query 305 TAAAACCTAGAAGAAAAGGAAG 326
| ||||| ||||||||||||
Sbjct 373 TGGTACCTACAAGAAAAGGAAG 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5