BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43910.1
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484823 jgi|Araly1|484823|fgenesh2_kg.5__815__AT3G43910.1 684 0.0
> Ahg484823 jgi|Araly1|484823|fgenesh2_kg.5__815__AT3G43910.1
Length=600
Score = 684 bits (370), Expect = 0.0
Identities = 532/605 (88%), Gaps = 31/605 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCAAAAATCGTTGAATCCTCTCTCTTCTTCTTCACCAAACTACGACGAGATGATT 60
||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 ATGAAGCAAGAATTGTTGAATCCTCTCTCTTATTCTTCACCAAACTACGACGAGGCGATT 60
Query 61 CAAGAGAATTTTAAGCCACATTGGATCATTGGGATTGACCCTAACTTATCCGGAGCTTTG 120
|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 61 CAAGAGAATTTTAAGCCACACTGGATCATTGGGATTGACCCTACCTTGTCCGGAGCTTTG 120
Query 121 GCTGTGCTGAAATTCGACGACAAGGGATCTTGTTTTGCTCAGGTATATGATACTCCTCAG 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 121 GCTGTGCTGAAATTCGACGACAAGGGATCTTGTTCTGCTCAGGTATATGATACTCCTC-G 179
Query 181 TTGG-AAGTTGTAGTTCAAAACATCCGAACA-CGTAGTTTCAACGAAAAATCAATGCTAG 238
|| |||||||||||||||| |||| || | | | ||||||| ||||||||||||||||
Sbjct 180 GCGGCAAGTTGTAGTTCAAAATATCCCAAGATC-TCGTTTCAAAGAAAAATCAATGCTAG 238
Query 239 AACTGATTCGTAGTCTAGATGTTCCATCCGGAACCAAGGCATTTGTAGCGAAATAT-ATT 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 239 AACTGATTCGTACTCTAGATGTTCCATCCGGAACCAAGGCATTTGTAGCGAAA-ATGATT 297
Query 298 CATCC-TGAAAACG-CTAT-T-A---CTGCCTACAATG-ATGGACTTGGATGTGGATTAT 349
| || |||| ||| | || | | |||||||||||| | |||||||||| ||||||||
Sbjct 298 C-TCTATGAAGACGACAATATCATGGCTGCCTACAATGCA-GGACTTGGATATGGATTAT 355
Query 350 GGACA------CTTCTCACATCTAGCATTTCTGTTATTTACGTTACTCCTTCTACATGGG 403
||||| ||||||||||||| ||||||||||| || |||| ||||||| ||||||
Sbjct 356 GGACAGGAATACTTCTCACATCTAACATTTCTGTTAGTTCCGTTGCTCCTTCGACATGGA 415
Query 404 ACAAACATTTTAATCTTAGTATTTGGAGTTTGGATGGTGGCAGGAAACTCGCACTGGAAA 463
| ||||||||||| |||||||||| || |||||||||||||||||||||| || |||
Sbjct 416 AGAAACATTTTAAACTTAGTATTTATAGCCGGGATGGTGGCAGGAAACTCGCATTGAAAA 475
Query 464 TGTTTCCATCACTTA------AATTGACAACGAAAATTGACGACAATGCTCGAGCTAATG 517
||||||||||||||| ||||||||| || || | ||| |||||||||||||||
Sbjct 476 TGTTTCCATCACTTAGTTCCCAATTGACAAGGAGAAG-G--GACTATGCTCGAGCTAATG 532
Query 518 CACTACTCATTGCTGCATATGGTCATGCTACAAGTGATACAAGATATTACTCATTTTCTC 577
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 533 CACTACTCATTGCTGCATATGGTCATGCTACAAGTGAAACAAAATATTACTCATTTTCTC 592
Query 578 AAATT 582
|||||
Sbjct 593 AAATT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21519752196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5