BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43930.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484825 jgi|Araly1|484825|fgenesh2_kg.5__817__AT3G43930.1 1051 0.0
> Ahg484825 jgi|Araly1|484825|fgenesh2_kg.5__817__AT3G43930.1
Length=1639
Score = 1051 bits (569), Expect = 0.0
Identities = 798/903 (88%), Gaps = 37/903 (4%)
Strand=Plus/Plus
Query 21 AATCTTCGTCCTCTTCCTTGAACTCCAAGATTCAAACATATTTTCTTATGGAAGGTGTTA 80
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTTCGTCCTCTTCCTTGAACACCAAGATTCAAACATATTTTCTTATGGAAGGTGTTA 60
Query 81 GAAGAGCAGAGGTGATTGATACAAAGAGGTGTTCGAAGCTGCGCGTGGATTTCACGCCCT 140
|||||||||||||||| | ||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 61 GAAGAGCAGAGGTGATCGTTACCAAGAGATGTTCGAAGCTGCGCGTGGAGTTCACGCCTT 120
Query 141 CACTACGTGGCAGTCGTATATCGGAGCCTTTTTCTCCGGccaccaccaccaccaccaccT 200
|||||||||||||||| |||||||||||||||||||| |||||||||| | | |||
Sbjct 121 CACTACGTGGCAGTCGCATATCGGAGCCTTTTTCTCCTGCCACCACCA--A-TGCTTCCT 177
Query 201 CCCGATTCCATCCACCGGTTCGTTCCGATGGACCTTTCTCTGGTCTAATCATCTGCGTAA 260
|||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 178 CCCGGTTCCAACCACCAGTTCGATCCGACGGACCTTTCTCTGGTCTAATCATCTGTGTAA 237
Query 261 CTGGTCTCTCTAAAGAGGCAAGGAAACAGGTCAAGGAAGCTACAGAGAGACTTGGTGGTG 320
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 238 CTGGTCTCTCTAAAGAAGCAAGGAAACAGGTTAAGGAAGCTACAGAGAGACTTGGTGGTG 297
Query 321 AATACAGTGCACTTTTGCATTCTCTATGTACACATTTGGTTGTTCAGAATTATGATGGAC 380
|||| ||| | |||||||||||||||||||||||||| | ||| || ||| | |
Sbjct 298 AATATAGTCCTCTTTTGCATTCTCTATGTACACATTT-G--GTT-----TT-TGA--G-C 345
Query 381 GGAAGTTTGAGCATGCATTGAAACATGGAAGAAGAGAGACTTTGTATATCGTTACGCTTG 440
| | || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 346 ---A---T--GC---C-TTGAAACATGGAAGAAGAGAGACTTTGCATATCGTTACGCTTG 393
Query 441 GGTGGTTTGTGGACAGTGTCTGTAGAAATGTTAAGCTGAGTGAGTCTTTCTACGCGGTCA 500
| ||||||||||| |||||| |||||||||||||| || ||||||||||||||||||| |
Sbjct 394 GCTGGTTTGTGGATAGTGTCCGTAGAAATGTTAAGTTGGGTGAGTCTTTCTACGCGGTAA 453
Query 501 AAAATCCCGAAGAGACTAAGGTGAATGAAGATGGAT-TAAAGTCGGTTTACGCGGTAGAA 559
|||| | | ||| ||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 454 AAAAGCTTGGAGACACTAAGGTGAATGTAGATGGATCTAAA-TCGGTTTACGCGGTAGAA 512
Query 560 AAACTACATAGAGGAGGAGGAGTTCAAGGAATAGAGGTCACAGGAAGCAAGGACTTGGCC 619
|||| || | | ||||| | | ||||||| | || |||||||||||||||||||||||
Sbjct 513 AAACCACCT--A-GAGGA--A-TGCAAGGAACAAAGTTCACAGGAAGCAAGGACTTGGCC 566
Query 620 TTGTCAGGCTATTCGGTTTTTATCGATGCTGATATTTCAGAGGAAGTGAGACGCCAGGTT 679
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 567 TTGTCAGGCTATTCAGTTTTTATCGATCCTGATATTTCAGAAGAAGTGAGACGCCGGGTT 626
Query 680 TCACAGGTGGCTGTTGAAGGAGGTGCCAAGCTTATGACTCAATGGTTCATTGGATGTAAT 739
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 TCACAGGTGGCTGTTGAAGGAGGTGCCAAGCTTATGAATCAATGGTTCATTGGATGTAAT 686
Query 740 GCTAGTCATGTTGTATGTGAAGGTGGTTCTGTTTTAAGATATCTTGGTCACTCTAGCAAT 799
|| ||||||||||||||||||| ||||||||| | ||||||||||||||||| || |||
Sbjct 687 GCAAGTCATGTTGTATGTGAAGCTGGTTCTGTCCTGAGATATCTTGGTCACTCGAGTAAT 746
Query 800 CTTG-TTACACCACTATGGCTTCAGAAGACGTTGGAAGAGAAACCAACGCAAAATCTAGT 858
||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 747 -TTGGTTACACCAGTATGGCTTCAGAAGACGTTGGAAGAGAAACCAATGCAAAATGTTGT 805
Query 859 TCAAATGTCAGATGATTTGGCACGAGATCTTAGGACAATGATTGAGAATCTTGGGAAGGA 918
|| |||||||| |||||||||| ||||| ||| |||||| |||||||||||| |||||
Sbjct 806 TCGAATGTCAGCTGATTTGGCAAGAGATGTTATAACAATGCTTGAGAATCTTGTGAAGGG 865
Query 919 ATC 921
|||
Sbjct 866 ATC 868
Score = 929 bits (503), Expect = 0.0
Identities = 610/661 (92%), Gaps = 9/661 (1%)
Strand=Plus/Plus
Query 1007 ATGGGGAAGACT-CTGATCCAGCCGTTAAATCTGAGCAGCCTTCTAGATTCTATCTCTTG 1065
||||| |||| | |||||||||||| |||| || |||||||||||||||||| | |||
Sbjct 966 ATGGGCAAGA-TGCTGATCCAGCCG---AATCAGACCAGCCTTCTAGATTCTATTTGTTG 1021
Query 1066 GACAATATCTGAACCAACTTCAACAGCTAGTGTTATCATAGATAGTTTCAGCAACAACGA 1125
|||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1022 GACAGTATCTGAACCAACCTCAACAGCTAGTGTTATCATAGATAGTTTTAACAACAACGA 1081
Query 1126 CGATATCGAAAGAAAATCTTTATCTGCCTTCTTTGATGCTAAATCTAATGATTCATTCAC 1185
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
Sbjct 1082 AGATATCGAAAGAAAATCTTTATCTGCCTTCTTTGATGATAAAACCAATGATTCATTCCC 1141
Query 1186 TCACTCCATGAGACTGCTCACAGAAAGTGAGAGAATGGAGTTGGTATACAAAAACCATTT 1245
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1142 TCACTCCATAAGACTGCTCACAGAAAGTGAGAGAATGGAATTGGTATACAAAAACCATTT 1201
Query 1246 TATAACATTACTACTTCCAATCGATTGGTATGGTGAAATGGGACCTTCTTCCAGGTCGTA 1305
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1202 TATAACATTACTACTTCCAATCGATTGGTATGGTGAGATGGGACCTTCTTCCAGGTCGTA 1261
Query 1306 TTTCAGTGAAACCGGCTTTACATGTCAGCAGATTCTCCAAAACATCTATGCATTCTATCA 1365
||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1262 TTTTAGTGAAACCGGCTTTACATGTCAGCAGATTCTACAACACATCTATGCATTCTATCA 1321
Query 1366 GGAAAACATGTCCGAGGAAGAACTCAAAGCAGCTATTCACACCAACTCGAGGCACAGTGA 1425
|||||| ||||| ||||| ||| |||||||||| |||||||||||||| ||||| |||||
Sbjct 1322 GGAAAATATGTCTGAGGAGGAAATCAAAGCAGCAATTCACACCAACTCAAGGCAGAGTGA 1381
Query 1426 AAAGCTCCGAGCAGCGGACTCGGTGATGAAAGGCGGGAAGACTGTATTCAAACGTATTCA 1485
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1382 AAAGCTCCGAGCAGTGGACTCGATGATGAAAGGCGGGAAGACTGTATTCAAACGGATTCA 1441
Query 1486 GTTTCTCGGATCC-GAGAAAGG-TTTCGAGATGCTAAAACGTGTTAGTAGCTTCAACTGT 1543
|||||| |||||| | |||||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 1442 GTTTCTTGGATCCCG-GAAAGGCTTT-GAGATGCTTAAACGTGTTAGTAGCTTCAATTGT 1499
Query 1544 AGTAATGTCTATGAGCTTATCATTAAGGCATAACAATTAACATATAAATTAGAGATTCAG 1603
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1500 AGTAATGTCTATGAGCTTATCATTAAGGCATAACAGTTAACAGATAAATTAGATATTCAG 1559
Query 1604 ATACAAAACTATTATTTGGGAGTTCTCGCATTTCCAAGATCTGCTCGAGATGACTAAATG 1663
|||||||| ||||||||||||||| | |||||| ||||||||||||||||| || |||||
Sbjct 1560 ATACAAAAATATTATTTGGGAGTTTTTGCATTTACAAGATCTGCTCGAGATCACCAAATG 1619
Query 1664 T 1664
|
Sbjct 1620 T 1620
Score = 76.8 bits (41), Expect = 5e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 930 ATAGGACGAGACCACACAAAGAAAGGCAGAAGATTGTGGAATCCGCCAAAAAG 982
|||| |||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATAGAACGACAACATACAAAGAAAGGCAGAAGATTGTGGAATCCGCCAAAAAG 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5