BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43960.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484828 jgi|Araly1|484828|fgenesh2_kg.5__820__AT3G43960.1 1740 0.0
Ahg897146 jgi|Araly1|897146|Al_scaffold_0005_1112 191 1e-47
> Ahg484828 jgi|Araly1|484828|fgenesh2_kg.5__820__AT3G43960.1
Length=1161
Score = 1740 bits (942), Expect = 0.0
Identities = 1090/1163 (94%), Gaps = 4/1163 (0%)
Strand=Plus/Plus
Query 9 aaaaaaaaaaCAGAAGGAGAAATGGCAATAAGTTTTAGAACTCTAGCTCTTTTGACCCTC 68
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAAACCAGAAGGAGAAATGGCAATAAGTTTTAGAACTCTAGCTCTTTTGACCCTC 60
Query 69 TCGGTGTTACTAATTTCCATATCTCTCGGCGTCGTCACAGCAACAGAGTCGCAGAGGAAT 128
|||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct 61 TCGGTGTTACTAATTTCCTTGTCTCTCGGCGTCGTCACGGCAACAGAGTCGCATCGGAAT 120
Query 129 GAAGGGGAGGTGCTTACAATGTACGAGCAATGGCTTGTAGAGAATGGGAAGAACTATAAC 188
|||| |||||||| ||| || ||||||| ||||||||||||| |||||||||||||||||
Sbjct 121 GAAGCGGAGGTGCGTACGATTTACGAGCGATGGCTTGTAGAGCATGGGAAGAACTATAAC 180
Query 189 GGTCTTGGAGAGAAGGAGAGACGGTTCAAGATCTTCAAAGACAACTTGAAGCGCATCGAA 248
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 181 GGTCTTGGAGAGAAGGAGAGACGGTTCAAGATCTTCAAAGACAACTTGAAACACATCGAA 240
Query 249 GAACACAATTCAGATCCAAACCGGAGTTATGAACGCGGGTTGAACAAGTTTTCGGATCTA 308
||||||||||| ||||| ||||||||||| || |||||||||||| |||||||||||||
Sbjct 241 GAACACAATTCGGATCCCAACCGGAGTTACGACCGCGGGTTGAACCAGTTTTCGGATCTG 300
Query 309 ACGG-CTGATGAGTTTCAAGCTAGTTACTTAGGTGGGAAGATGGAAAAGAAAAGCCTATC 367
|||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 301 ACGGTC-GATGAGTTTCAAGCTAGTTACTTGGGTGGGAAGATAGAAAAGAAAAGCCTATT 359
Query 368 AGATGTAGCGGAGAGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTG 427
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 360 AGATGTAGCGGAGAGGTATCAGTACAAAGAAGGAGATATTTTGCCTGATGAAGTAGATTG 419
Query 428 GAGGGAGAGAGGAGCAGTTGTTCCAAGAGTCAAAAGACAAGGAGAGTGTGGAAGTTGTTG 487
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GAGGGAGAGAGGAGCAGTTGTTCCAAGAGTCAAAAGACAAGGAGATTGTGGAAGTTGTTG 479
Query 488 GGCGTTTGCCGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTAGT 547
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 480 GGCGTTTGCGGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACTGGAGAGTTATT 539
Query 548 ATCTTTATCGGAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTGGATGTGC 607
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 ATCTTTATCGGAACAAGAACTCATTGACTGCGATAGAGGGAAAGACAACTTTGGATGTGC 599
Query 608 TGGTGGTGGAGCAGTATGGGCCTTTGAGTTCATTAAGGAGAACGGTGGTATTGTATCCGA 667
||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 600 TGGAGGTGGAGCAGTGTGGGCCTTTGAGTTCATTAAAGAAAACGGTGGTATAGTAACCGA 659
Query 668 TGAAGTTTATGGTTATACCGGTGAAGATACTGCCGCATGCAAGGCCATTGAGATGAAAAC 727
||||| ||| |||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 660 TGAAGATTACGGTTATACTGGCGATGATACTGCCGCGTGCAAGGCCATTGAGATGAAAAC 719
Query 728 CACTCGGGTTGTTACCATTAATGGTCATGAGGTTGTTCCTGTAAACGATGAGATGTCTTT 787
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 720 CACTCGGGTTGTTACCATTAATGGTCATGAAGTTGTTCCTGTAAATGATGAGATGTCTTT 779
Query 788 GAAGAAAGCTGTTGCTTATCAACCTATTAGTGTTATGATATCAGCTGCAAACATGAGCGA 847
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGAAAGCTGTTTCTTATCAACCTATTAGTGTTATGATATCAGCTGCAAACATGAGCGA 839
Query 848 CTACAAATCTGGTGTGTATAAAGGAGCATGTAGTAATTTGTGGGGAGATCACAATGTGCT 907
||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 840 CTACAAATCTGGTGTATATAAAGGACCATGTAGTAATTTGTGGGGAGACCATAATGTGCT 899
Query 908 AATTGTGGGGTATGGAACATCATCAGATGAAGGAGACTACTGGCTTATTCGTAATTCTTG 967
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AATTGTGGGATATGGAACATCATCAGATGAAGGAGACTACTGGCTTATTCGTAATTCTTG 959
Query 968 GGGACCAGAGTGGGGAGAAGGCGGGTACCTTAGGCTTCAACGTAACTTCCATGAACCAAC 1027
|||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 960 GGGACCAGGGTGGGGAGAAGGCGGATACCTTAGGCTCCAACGTAACTTCAATGAACCAAC 1019
Query 1028 CGGGAAATGTGCAGTCGCTGTAGCTCCTGTATACCCAATCAAGTCGAACTCTTCATCTCA 1087
|||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||| ||
Sbjct 1020 CGGGAAATGTGCAGTCGCAGTAGCACCTGTATACCCAATCAAGACGAACTCGGCATC-CA 1078
Query 1088 -TTTGTTGTCTCCAAGTGTGTTTAAATTGGTTGTTTTATTTGTTTTTCAGTTGATTAGTT 1146
||| ||||| |||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 1079 ATTTATTGTCACCAAGTGTGTTTAAATTGGTCCTTTTATGTATTTTTCAGTTGATTAGTT 1138
Query 1147 TGGCCTTGCTTTGAAATATACTT 1169
|||||||||||||| ||||||||
Sbjct 1139 TGGCCTTGCTTTGATATATACTT 1161
> Ahg897146 jgi|Araly1|897146|Al_scaffold_0005_1112
Length=921
Score = 191 bits (103), Expect = 1e-47
Identities = 269/347 (78%), Gaps = 20/347 (6%)
Strand=Plus/Plus
Query 381 AGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTGGAGGGAGAGAGGA 440
||||||| |||||| ||||||||| ||| || |||||||| ||||||||||||||||||
Sbjct 274 AGGTATCGGTACAAGGAAGGAGATAATTTGCCAGATGAAGTCGATTGGAGGGAGAGAGGA 333
Query 441 GCAGTTGTTCCAAGAGTCAAAAGACA-AGGAGAGTGT-GGAAGTTGTTGGGCGTTTGCCG 498
||||||||| || ||| ||| | | | | || |||||||||| ||| | |
Sbjct 334 GCAGTTGTT----GA-ACAAGAGATATCTAAAAACCTAAGAGGTTGTTGGGCATTTTCGG 388
Query 499 CGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATT-AGTATCTTTATCG 557
|| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 389 CGGCTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTGA-TATCTTTGTCA 447
Query 558 GAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTG-GATGTGCTGGTGGTGG 616
|||||| ||||||||||||||| || || ||| ||| | |||||| ||| ||||
Sbjct 448 GAACAACAACTCATTGACTGCGCTACAGA-AAC--CAA-TGACCGATGTGATGGAGGTG- 502
Query 617 A-GCAGTATGGGCCTTTGA-GTTCATTAAGGAGAACGGTGGTATTGTATCCGATGAAGTT 674
| || | || || ||| | |||||||||||| || |||||||| ||| | || ||| |
Sbjct 503 ACGCGGCATACGCTTTT-ATGTTCATTAAGGAAAATGGTGGTATAGTAACAAATAAAGAT 561
Query 675 TATGGTTATACCGGTGA-AGATACTGCCGCATGCAAGGCCATTGAGA 720
|| || ||| || || | | | ||| | ||||||||||||||||
Sbjct 562 TACCCTTTTACTGGCGATAAAAA-TGCAACGTGCAAGGCCATTGAGA 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5