BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G43960.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg484828 jgi|Araly1|484828|fgenesh2_kg.5__820__AT3G43960.1 1740 0.0 Ahg897146 jgi|Araly1|897146|Al_scaffold_0005_1112 191 1e-47 > Ahg484828 jgi|Araly1|484828|fgenesh2_kg.5__820__AT3G43960.1 Length=1161 Score = 1740 bits (942), Expect = 0.0 Identities = 1090/1163 (94%), Gaps = 4/1163 (0%) Strand=Plus/Plus Query 9 aaaaaaaaaaCAGAAGGAGAAATGGCAATAAGTTTTAGAACTCTAGCTCTTTTGACCCTC 68 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAACAAAACCAGAAGGAGAAATGGCAATAAGTTTTAGAACTCTAGCTCTTTTGACCCTC 60 Query 69 TCGGTGTTACTAATTTCCATATCTCTCGGCGTCGTCACAGCAACAGAGTCGCAGAGGAAT 128 |||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| Sbjct 61 TCGGTGTTACTAATTTCCTTGTCTCTCGGCGTCGTCACGGCAACAGAGTCGCATCGGAAT 120 Query 129 GAAGGGGAGGTGCTTACAATGTACGAGCAATGGCTTGTAGAGAATGGGAAGAACTATAAC 188 |||| |||||||| ||| || ||||||| ||||||||||||| ||||||||||||||||| Sbjct 121 GAAGCGGAGGTGCGTACGATTTACGAGCGATGGCTTGTAGAGCATGGGAAGAACTATAAC 180 Query 189 GGTCTTGGAGAGAAGGAGAGACGGTTCAAGATCTTCAAAGACAACTTGAAGCGCATCGAA 248 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 181 GGTCTTGGAGAGAAGGAGAGACGGTTCAAGATCTTCAAAGACAACTTGAAACACATCGAA 240 Query 249 GAACACAATTCAGATCCAAACCGGAGTTATGAACGCGGGTTGAACAAGTTTTCGGATCTA 308 ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||||||||| Sbjct 241 GAACACAATTCGGATCCCAACCGGAGTTACGACCGCGGGTTGAACCAGTTTTCGGATCTG 300 Query 309 ACGG-CTGATGAGTTTCAAGCTAGTTACTTAGGTGGGAAGATGGAAAAGAAAAGCCTATC 367 |||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 301 ACGGTC-GATGAGTTTCAAGCTAGTTACTTGGGTGGGAAGATAGAAAAGAAAAGCCTATT 359 Query 368 AGATGTAGCGGAGAGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTG 427 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| Sbjct 360 AGATGTAGCGGAGAGGTATCAGTACAAAGAAGGAGATATTTTGCCTGATGAAGTAGATTG 419 Query 428 GAGGGAGAGAGGAGCAGTTGTTCCAAGAGTCAAAAGACAAGGAGAGTGTGGAAGTTGTTG 487 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 GAGGGAGAGAGGAGCAGTTGTTCCAAGAGTCAAAAGACAAGGAGATTGTGGAAGTTGTTG 479 Query 488 GGCGTTTGCCGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTAGT 547 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | Sbjct 480 GGCGTTTGCGGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACTGGAGAGTTATT 539 Query 548 ATCTTTATCGGAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTGGATGTGC 607 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 ATCTTTATCGGAACAAGAACTCATTGACTGCGATAGAGGGAAAGACAACTTTGGATGTGC 599 Query 608 TGGTGGTGGAGCAGTATGGGCCTTTGAGTTCATTAAGGAGAACGGTGGTATTGTATCCGA 667 ||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||| |||| Sbjct 600 TGGAGGTGGAGCAGTGTGGGCCTTTGAGTTCATTAAAGAAAACGGTGGTATAGTAACCGA 659 Query 668 TGAAGTTTATGGTTATACCGGTGAAGATACTGCCGCATGCAAGGCCATTGAGATGAAAAC 727 ||||| ||| |||||||| || || ||||||||||| ||||||||||||||||||||||| Sbjct 660 TGAAGATTACGGTTATACTGGCGATGATACTGCCGCGTGCAAGGCCATTGAGATGAAAAC 719 Query 728 CACTCGGGTTGTTACCATTAATGGTCATGAGGTTGTTCCTGTAAACGATGAGATGTCTTT 787 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 720 CACTCGGGTTGTTACCATTAATGGTCATGAAGTTGTTCCTGTAAATGATGAGATGTCTTT 779 Query 788 GAAGAAAGCTGTTGCTTATCAACCTATTAGTGTTATGATATCAGCTGCAAACATGAGCGA 847 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GAAGAAAGCTGTTTCTTATCAACCTATTAGTGTTATGATATCAGCTGCAAACATGAGCGA 839 Query 848 CTACAAATCTGGTGTGTATAAAGGAGCATGTAGTAATTTGTGGGGAGATCACAATGTGCT 907 ||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||| Sbjct 840 CTACAAATCTGGTGTATATAAAGGACCATGTAGTAATTTGTGGGGAGACCATAATGTGCT 899 Query 908 AATTGTGGGGTATGGAACATCATCAGATGAAGGAGACTACTGGCTTATTCGTAATTCTTG 967 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AATTGTGGGATATGGAACATCATCAGATGAAGGAGACTACTGGCTTATTCGTAATTCTTG 959 Query 968 GGGACCAGAGTGGGGAGAAGGCGGGTACCTTAGGCTTCAACGTAACTTCCATGAACCAAC 1027 |||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||||| Sbjct 960 GGGACCAGGGTGGGGAGAAGGCGGATACCTTAGGCTCCAACGTAACTTCAATGAACCAAC 1019 Query 1028 CGGGAAATGTGCAGTCGCTGTAGCTCCTGTATACCCAATCAAGTCGAACTCTTCATCTCA 1087 |||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||| || Sbjct 1020 CGGGAAATGTGCAGTCGCAGTAGCACCTGTATACCCAATCAAGACGAACTCGGCATC-CA 1078 Query 1088 -TTTGTTGTCTCCAAGTGTGTTTAAATTGGTTGTTTTATTTGTTTTTCAGTTGATTAGTT 1146 ||| ||||| |||||||||||||||||||| |||||| | |||||||||||||||||| Sbjct 1079 ATTTATTGTCACCAAGTGTGTTTAAATTGGTCCTTTTATGTATTTTTCAGTTGATTAGTT 1138 Query 1147 TGGCCTTGCTTTGAAATATACTT 1169 |||||||||||||| |||||||| Sbjct 1139 TGGCCTTGCTTTGATATATACTT 1161 > Ahg897146 jgi|Araly1|897146|Al_scaffold_0005_1112 Length=921 Score = 191 bits (103), Expect = 1e-47 Identities = 269/347 (78%), Gaps = 20/347 (6%) Strand=Plus/Plus Query 381 AGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTGGAGGGAGAGAGGA 440 ||||||| |||||| ||||||||| ||| || |||||||| |||||||||||||||||| Sbjct 274 AGGTATCGGTACAAGGAAGGAGATAATTTGCCAGATGAAGTCGATTGGAGGGAGAGAGGA 333 Query 441 GCAGTTGTTCCAAGAGTCAAAAGACA-AGGAGAGTGT-GGAAGTTGTTGGGCGTTTGCCG 498 ||||||||| || ||| ||| | | | | || |||||||||| ||| | | Sbjct 334 GCAGTTGTT----GA-ACAAGAGATATCTAAAAACCTAAGAGGTTGTTGGGCATTTTCGG 388 Query 499 CGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATT-AGTATCTTTATCG 557 || ||||||||||||||||||||||||||||||||||||||||||| | ||||||| || Sbjct 389 CGGCTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTGA-TATCTTTGTCA 447 Query 558 GAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTG-GATGTGCTGGTGGTGG 616 |||||| ||||||||||||||| || || ||| ||| | |||||| ||| |||| Sbjct 448 GAACAACAACTCATTGACTGCGCTACAGA-AAC--CAA-TGACCGATGTGATGGAGGTG- 502 Query 617 A-GCAGTATGGGCCTTTGA-GTTCATTAAGGAGAACGGTGGTATTGTATCCGATGAAGTT 674 | || | || || ||| | |||||||||||| || |||||||| ||| | || ||| | Sbjct 503 ACGCGGCATACGCTTTT-ATGTTCATTAAGGAAAATGGTGGTATAGTAACAAATAAAGAT 561 Query 675 TATGGTTATACCGGTGA-AGATACTGCCGCATGCAAGGCCATTGAGA 720 || || ||| || || | | | ||| | |||||||||||||||| Sbjct 562 TACCCTTTTACTGGCGATAAAAA-TGCAACGTGCAAGGCCATTGAGA 607 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5