BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G43980.1

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937003 jgi|Araly1|937003|scaffold_501194.1                        294    3e-79
  Ahg897155 jgi|Araly1|897155|Al_scaffold_0005_1121                    268    2e-71


> Ahg937003 jgi|Araly1|937003|scaffold_501194.1
Length=215

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 183/195 (94%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  53   TTCCTCTGTGAGCAAATCGACAAAATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAG  112
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  1    TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG  60

Query  113  AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCACACGGGCTTATCAGG  172
            ||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  61   AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG  120

Query  173  AAGTATGGTTTGAATTGCTGCAGACAGTGTTTCCGCAGTAACGCCAAGGAGATCGGATTC  232
            |||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct  121  AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC  180

Query  233  ATTAAGTACCGTTAA  247
            || ||||||||||||
Sbjct  181  ATCAAGTACCGTTAA  195


> Ahg897155 jgi|Araly1|897155|Al_scaffold_0005_1121
Length=171

 Score =  268 bits (145),  Expect = 2e-71
 Identities = 161/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  77   ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGTCCTGGATCTCGTTTA  136
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGACCTGGATCTCGTTTA  60

Query  137  TGCCGTGTGTGCGGGAACTCACACGGGCTTATCAGGAAGTATGGTTTGAATTGCTGCAGA  196
            |||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct  61   TGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGGAAGTATGGATTGAACTGCTGCAGA  120

Query  197  CAGTGTTTCCGCAGTAACGCCAAGGAGATCGGATTCATTAAGTACCGTT  245
            |||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct  121  CAGTGTTTCCGCAGCAACGCCAAGGAGATTGGATTCATCAAGTACCGTT  169



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14346501464


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5