BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43990.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347481 jgi|Araly1|347481|fgenesh1_pg.C_scaffold_5000873 1485 0.0
> Ahg347481 jgi|Araly1|347481|fgenesh1_pg.C_scaffold_5000873
Length=1155
Score = 1485 bits (804), Expect = 0.0
Identities = 1045/1158 (90%), Gaps = 29/1158 (3%)
Strand=Plus/Plus
Query 1 ATGTCCATCCAGCAATCGAATGAAGTGGTTGT----G-A--T--TGACAATGTTCCATTG 51
||||| ||||| ||| |||||||||||||||| | | | |||||||||||||||
Sbjct 1 ATGTCGATCCATCAAGCGAATGAAGTGGTTGTGAGCGAAGGTGAAGACAATGTTCCATTG 60
Query 52 TCGACGTTAAGCACCAAAGAAACGACGACAAAGAAGAGAAGGGTGGAGGAGAGTAAGGAA 111
||||||||||| |||||||| || | | |||| ||||| | |||||||||||||||
Sbjct 61 TCGACGTTAAGAACCAAAGACACAAAGTTAAAG--CAGAAGAG-GGAGGAGAGTAAGGAC 117
Query 112 ATGCAAGTGAAGAAGAAAGCAAAGTTCGAGC-AGAGACCGAGCGA---TTGTGCGAAGTC 167
||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct 118 ATGCAAGTGAAGAAGAAAGCAAAGTTCGA-CTGGAGACCGAGTGATTCTTGTGCGAAGTC 176
Query 168 AATTGGTAAACCGATTAAGTTTACTGGTAAGGGACAAAACAAGAAATGTCATTACGAGAC 227
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 177 AATTGGCAAACCGATTAAGTTTACTGGTAAGGGAGGAAACAAGAAATGTCATTACGAGAC 236
Query 228 ATTCGAGTTTCATGGCAAACAATATAGACTGAAAGACTTTGTGCTATT-GTATCCAGAAG 286
||||||||||||||||||| ||||||||||| ||||||||||| ||| || |||||||
Sbjct 237 ATTCGAGTTTCATGGCAAAGAATATAGACTGGAAGACTTTGTGGAATTGGT-TCCAGAAA 295
Query 287 A-CAATAAACAAAAGGAATACATTGCGATCATCAAGGATATTTAT-TCACAAGAAAAAGA 344
| | | || |||||||||||||| ||||||||||||||||||||| | || |||||||||
Sbjct 296 ACCCA-AACCAAAAGGAATACATAGCGATCATCAAGGATATTTATAT-ACGAGAAAAAGA 353
Query 345 TGGACTTGTGAAGATGGAGGTGCAGTGGTTTTACCGTAGAGAAGATATCGAAGAAAAACA 404
|||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 354 TGGACTTGTGAAAATGTTGGTGCAATGGTTTTACCGCAGAGAAGATATCGAAGAAAAAGA 413
Query 405 TTTTGGGA-AGTGGAAAACCGAAAACCCAAGGGAAATTTTCTTCAGTTTTCATTGTGATG 463
| || ||| |||||||| ||||| || |||| ||||||||||||||||| ||||||||||
Sbjct 414 TGTT-GGAGAGTGGAAATCCGAAGACTCAAGCGAAATTTTCTTCAGTTTCCATTGTGATG 472
Query 464 AAGTGTTTGCTGAATCTGTCAAGTACAAGTGTCTTGTATATTTCGTGCCAGATGATAAGC 523
|||||| |||||||||||| |||||||||||| |||| ||||||||||| ||||||||||
Sbjct 473 AAGTGTGTGCTGAATCTGTGAAGTACAAGTGTTTTGTGTATTTCGTGCCGGATGATAAGC 532
Query 524 AAATCCCAAACCGTATTCA-TCATTCCGGCTTCATCGTGCAAATGGTTTATGATAATGTT 582
|| | |||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 533 AAGTTCCAAACCGTATTCAGTC-TTCCGGCTTCGTCGTGCAAATGGTTTATGATAATGTT 591
Query 583 CGCAAAAAGGTGAGGAAGTTCTCTCATGAAGGCTTTGAAGAGGAGCAAAAGTTTGAGATT 642
| ||| || ||| |||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 592 CACAATGAGATGATGAAGTTCTCTGATGAAAGCTTTGACGAGGAGCAAAAGTTTGAGATT 651
Query 643 GATATGCTTGTGGCAAAGACGGTTTCGAGAATTGGAAATCTCGTTGACGTTGAGAAAGTT 702
||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 652 GATATTCTTGTGGCAAGGACGATTTCGAGAATTGGTGATCTCGTTGACGTTGAGAAAGTC 711
Query 703 CAAACGACTACGATTCCGAGGCGTAAAAGAATT-GTTAGGAAGTGTGAGAGAATGAGTTC 761
|||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 712 CAAATGACTACAATTCCGAGGCGTAAAAG-ATTAGTTAGGAAGTGTGAGAGAATGAGTTC 770
Query 762 TAACCCGATCTCGGAGAAGTTAGAGTCGTTACCATCCAGTGCTTTGGATCGTGACAAGAC 821
|| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 771 TAGGCCGATCTCGGACAAGTTAGAGTCGTTACCATCCAGTGATTTGGATCGTGACAAGAT 830
Query 822 ATTGTTGGAGCTTTTAGAAGTAGTACTTAAGAACATGTGTTGTGAAAGTACGGGGACCAG 881
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 831 ATTGGTGGAGCTTTTAGAAGTAGTACTTAAGAACTTGTGTTCTGAAAGTACGGGGACCAC 890
Query 882 TCGAAAGGATGTTGTTCAGATGGTACTTGCTCTTGAGGAGGCTTTATATGATTCTTTCGC 941
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CCGAAAGGATGTTGTTCAGGTGGTACTTGCTCTTGAGGAGGCTTTATATGATTCTTTCGC 950
Query 942 GGATGATGTACCAAAGTATAATTACAAGTTGGAGCTTCTGGTTGAGAGACTCAAGAATTC 1001
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 951 AGATGATATACCAAAGTATAATTACAAGTTGGAGCTTCTGGTCAAGAGACTCAAGAATTC 1010
Query 1002 AAGAGTGCTAGCTACAAGACTTCTCAATGGCGAATTAAAACCTGAACAAGCTATAAAGAT 1061
|||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1011 AAGAGTGCTAGCTAGAGGACTTCTCAGTGGCAAATTAAAACCTGAACAAGCTATAAAGAT 1070
Query 1062 GGCCGACTTCGAAGAACCAAAATTGGTGGAAGATGTTGCATCCACCTCCGAAAATGTTGG 1121
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 GGCCGACTTCGAAGAACCAATATTGGTGGAAGATGTTGCATCCACCTCCAAAAATGTTGG 1130
Query 1122 GCACAAAGATTGTCTCGA 1139
||||||||||||||||||
Sbjct 1131 GCACAAAGATTGTCTCGA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5