BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44005.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937006 jgi|Araly1|937006|scaffold_501197.1                        261    4e-69


> Ahg937006 jgi|Araly1|937006|scaffold_501197.1
Length=701

 Score =  261 bits (141),  Expect = 4e-69
 Identities = 289/354 (82%), Gaps = 35/354 (10%)
 Strand=Plus/Plus

Query  185  CAAAACTTG---AGTTTCTCCAGTTCAGAAGAGCTTCAAGCTCTATGAGCTGCTACAATG  241
            |||||||||   ||||||| ||||||||| |||||||||||||||| |||| ||||||||
Sbjct  361  CAAAACTTGATCAGTTTCTTCAGTTCAGAGGAGCTTCAAGCTCTATCAGCTTCTACAATG  420

Query  242  ATTACGTTAGAGACATTTCACGAGACGAAAAATAAGTGGATAGTATGATTTTGCC-GCAG  300
            ||| |||||||||||||| ||  |  |        | |||||||| |||||  ||  || 
Sbjct  421  ATTCCGTTAGAGACATTTTAC--G--G--------GCGGATAGTACGATTTCACCACCA-  467

Query  301  GGTAAGCAGGACAATGTAATCCGAGATGTATTTATTTTGAAACAACTAGGTGTGCCTCAA  360
             |||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  468  TGTAAGCAGGAGAATATAATCCGAGATGTATTCATTTTGAAACAACTAGGCGTGCCTCAA  527

Query  361  GAGTTGTTAAT---C---CT---CTT---GA------TCAATGGAAAAGAAGAAGCCAAA  402
            |||||||||||   |   ||   |||    |      |||||||||||||| ||  ||||
Sbjct  528  GAGTTGTTAATCCCCTTGCTCAACTTCAATACCTCTTTCAATGGAAAAGAAAAATACAAA  587

Query  403  AAAGCCATCAAGGAGGTCATTGAGAAGGGTTTTGATCCGACCACCTTAAAGATTTTCCAA  462
            ||| |||||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct  588  AAATCCATCAAGGAGGTCATTGAGGAGAGTTTTGATCCGACCACCTTAAAAATTTTCCAA  647

Query  463  GCTTTGCGTGTGTTTTACGTATTGAGGGACTAAACAATAGAAGAAAACGTCAAT  516
            ||| |||| || |||||| |||||||||||||||||||||||||||| | ||||
Sbjct  648  GCTCTGCGCGTTTTTTACTTATTGAGGGACTAAACAATAGAAGAAAAAGCCAAT  701



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5