BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44010.1 Length=483 Score E Sequences producing significant alignments: (Bits) Value Ahg937003 jgi|Araly1|937003|scaffold_501194.1 302 2e-81 Ahg897155 jgi|Araly1|897155|Al_scaffold_0005_1121 263 9e-70 > Ahg937003 jgi|Araly1|937003|scaffold_501194.1 Length=215 Score = 302 bits (163), Expect = 2e-81 Identities = 189/202 (94%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 45 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTATGGAACTCTCATCCGAAG 104 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1 TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG 60 Query 105 AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGG 164 ||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||| || Sbjct 61 AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG 120 Query 165 AAGTATGGTTTGAACTGCTGCAGACAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTC 224 ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 121 AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC 180 Query 225 ATTAAGTACCGTTAATCAAGCA 246 || ||||||||||||| ||||| Sbjct 181 ATCAAGTACCGTTAATGAAGCA 202 > Ahg897155 jgi|Araly1|897155|Al_scaffold_0005_1121 Length=171 Score = 263 bits (142), Expect = 9e-70 Identities = 160/169 (95%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 69 ATGGGTCACTCTAATGTATGGAACTCTCATCCGAAGAAGTACGGTCCTGGATCTCGTTTA 128 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGACCTGGATCTCGTTTA 60 Query 129 TGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGGAAGTATGGTTTGAACTGCTGCAGA 188 |||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||| Sbjct 61 TGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGGAAGTATGGATTGAACTGCTGCAGA 120 Query 189 CAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTCATTAAGTACCGTT 237 ||||||||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 121 CAGTGTTTCCGCAGCAACGCCAAGGAGATTGGATTCATCAAGTACCGTT 169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17513415351 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5