BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44010.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937003 jgi|Araly1|937003|scaffold_501194.1                        302    2e-81
  Ahg897155 jgi|Araly1|897155|Al_scaffold_0005_1121                    263    9e-70


> Ahg937003 jgi|Araly1|937003|scaffold_501194.1
Length=215

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 189/202 (94%), Gaps = 0/202 (0%)
 Strand=Plus/Plus

Query  45   TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTATGGAACTCTCATCCGAAG  104
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  1    TTCCTCTGTGAGCAAATCGACGAAATGGGTCACTCTAATGTCTGGAACTCTCATCCAAAG  60

Query  105  AAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGG  164
            ||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct  61   AAGTATGGCCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGG  120

Query  165  AAGTATGGTTTGAACTGCTGCAGACAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTC  224
            ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct  121  AAGTATGGTTTGAACTGTTGCAGACAATGTTTCCGCAGCAACGCTAAGGAGATCGGATTC  180

Query  225  ATTAAGTACCGTTAATCAAGCA  246
            || ||||||||||||| |||||
Sbjct  181  ATCAAGTACCGTTAATGAAGCA  202


> Ahg897155 jgi|Araly1|897155|Al_scaffold_0005_1121
Length=171

 Score =  263 bits (142),  Expect = 9e-70
 Identities = 160/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  69   ATGGGTCACTCTAATGTATGGAACTCTCATCCGAAGAAGTACGGTCCTGGATCTCGTTTA  128
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGACCTGGATCTCGTTTA  60

Query  129  TGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGGAAGTATGGTTTGAACTGCTGCAGA  188
            |||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||
Sbjct  61   TGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGGAAGTATGGATTGAACTGCTGCAGA  120

Query  189  CAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTCATTAAGTACCGTT  237
            ||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct  121  CAGTGTTTCCGCAGCAACGCCAAGGAGATTGGATTCATCAAGTACCGTT  169



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5