BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44020.1

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897156 jgi|Araly1|897156|Al_scaffold_0005_1122                    606    5e-173


> Ahg897156 jgi|Araly1|897156|Al_scaffold_0005_1122
Length=465

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 435/483 (90%), Gaps = 21/483 (4%)
 Strand=Plus/Plus

Query  11   ATGGCCAGTCGACCTCTCATCTCTCTGcaacttctttcttcttcttcttcatcttcctcg  70
            ||||||| ||||||||||||||||||||||||||  | |||||||||||||||||| | |
Sbjct  1    ATGGCCACTCGACCTCTCATCTCTCTGCAACTTC--T-TTCTTCTTCTTCATCTTCTTTG  57

Query  71   ttaaaacc-aacaacaaaacttctcttctt-tcATAAACCTGAACTAATTAGCCACCACC  128
            || ||||| |||| || |||||||| |||| ||| ||||| || ||||| ||   |||||
Sbjct  58   TT-AAACCAAACACCACAACTTCTC-TCTTATCAGAAACCAGAGCTAATCAG---CCACC  112

Query  129  ATAGAAACCGTAACAAGTTGTCACGGACAAGTGTTCATCAA-CACTCAGCTAATCTCATC  187
            |||||||  ||     |  |||||| ||||||| ||||||| | |||||||||| |||||
Sbjct  113  ATAGAAA--GT-----G--GTCACGAACAAGTGCTCATCAATC-CTCAGCTAATTTCATC  162

Query  188  ATTCACCCTTCTGTTCTTTTCCTAAGTAGCGCCTTCGATGGCGGTGGAGGATTCATCGAT  247
            ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  163  ATTCACCCTTCTGTTCTTTTCCTAAGTAGCGGCTTCGATGGCGGTGGCGGATTCATCGAT  222

Query  248  ACACAGACTTTTATTGTCACCATTAGTCTCGTTGTAGCCATTGCTCTCTCACTATTCCTC  307
            ||||||||||| ||||| || || ||||||||||||||||||||||| || || ||||||
Sbjct  223  ACACAGACTTTCATTGTTACTATCAGTCTCGTTGTAGCCATTGCTCTATCTCTCTTCCTC  282

Query  308  GGCTTCAAGGGAGATCCAGTTCCTTGTGAGAGATGTGGTGGAAACGGCGGAACGAAATGT  367
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  283  GGCTTCAAGGGAGATCCAGTTCCATGTGAGAGATGTGGTGGAAATGGCGGAACGAAATGT  342

Query  368  GTATTTTGCCTAGAAGGGAAGATGAAGGTGGAATCTGGCATGGTTGATTGCAAAGTCTGC  427
            ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  343  GTATTCTGCCTCGAAGGGAAGATGAAGGTGGAATCTGGCATGGTTAATTGCAAAGTCTGC  402

Query  428  AAAGGTTCAGGTTTGATTTTTTGCAAGAAATGTGGAGGTTCCGGATATTCTCGCCGTTTA  487
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  403  AAAGGTTCAGGTTTGATTTTTTGCAAGAAATGTGGAGGTTCTGGATATTCTCGCCGTTTA  462

Query  488  TAA  490
            |||
Sbjct  463  TAA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24169929378


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5