BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44030.1
Length=2956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942705 jgi|Araly1|942705|scaffold_603249.1 813 0.0
Ahg897008 jgi|Araly1|897008|Al_scaffold_0005_974 520 3e-146
Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609 472 9e-132
Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608 466 4e-130
Ahg497217 jgi|Araly1|497217|fgenesh2_kg.61__1__AT5G28667.1 381 2e-104
Ahg480397 jgi|Araly1|480397|fgenesh2_kg.3__3098__AT3G30520.1 363 6e-99
Ahg494740 jgi|Araly1|494740|fgenesh2_kg.8__556__AT5G28667.1 359 7e-98
Ahg906119 jgi|Araly1|906119|Al_scaffold_0003_3247 250 5e-65
> Ahg942705 jgi|Araly1|942705|scaffold_603249.1
Length=2035
Score = 813 bits (440), Expect = 0.0
Identities = 534/580 (92%), Gaps = 3/580 (1%)
Strand=Plus/Plus
Query 2040 GAAAGAATTGAATTGTGGAATTTGGAAAATGAACAATTTGAAGAGTTAGTAATTCAACCA 2099
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1161 GAAAGAATTGAATTGTGGAATTTAGAAAACGAACAATTTGAAGAGTTAGTAATTCAACCA 1220
Query 2100 GCTTTGAATTATTATGACCGATA-TTTCAAAGAGCACCCGTTCAAACTGATAGAGATTTG 2158
||||||| ||||||||| ||||| |||||||||||||| || ||||| ||| ||| ||||
Sbjct 1221 GCTTTGACTTATTATGATCGATATTTTCAAAGAGCACCGGTCCAAACCGATGGAGGTTTG 1280
Query 2159 GGATGGAGAAATATATGGCGTCGGCTACAGCAAGATGATGCTGCTTGTCTTCAATTATTA 2218
|||||||||||||| |||||||| |||| |||||||||||||| |||||||| ||||||
Sbjct 1281 GGATGGAGAAATATTTGGCGTCGATTACAACAAGATGATGCTGCCTGTCTTCAGTTATTA 1340
Query 2219 CGGATGTCACTTCCATGTTTCACGACATTGTGTAATATGTTGCAAACAAATTATGGTCTT 2278
||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 1341 CGGATGTCACTTCCATGTTTCACAACATTGTGTAATATATTGCAGACAAATTACGGTCTA 1400
Query 2279 CAGCCAACATTGAATATAAGTATTAAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGG 2338
|| |||||| | |||||||| ||| |||||||||| || ||||||||||||||||||||
Sbjct 1401 CAACCAACACTAAATATAAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGA 1460
Query 2339 CACAATGAAGTTCAAATAGATGTTGGTTTAAGATTTGGACA-AAATCAAGAAACTGTGCA 2397
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1461 CACAATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCA 1519
Query 2398 AAGAAAATTTAGAGAAGTTCTTACGGAAACTGAATTATTAGCATGTGATTATATTAGAAC 2457
||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1520 GAGAAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAAC 1579
Query 2458 TCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAAGTAGACCGAAGATATTG 2517
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1580 TCCAACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGACCGGAGATATTG 1639
Query 2518 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGGACACATGTGTGCGTAAAAGTAAA 2577
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1640 GCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGAACTCATGTATGCGTAAAAGTAAA 1699
Query 2578 GCCTGAGTTACAGGGAATGTATTGGAATCGACACGATAAT 2617
|| ||||||||| |||||||||||||||||||||||||||
Sbjct 1700 GCTTGAGTTACAAGGAATGTATTGGAATCGACACGATAAT 1739
> Ahg897008 jgi|Araly1|897008|Al_scaffold_0005_974
Length=1116
Score = 520 bits (281), Expect = 3e-146
Identities = 395/448 (88%), Gaps = 15/448 (3%)
Strand=Plus/Plus
Query 930 AGATCT-GGAGGAAGCTCACA-AGTTTCTATTGGAAGTGGTTCACGAGGAAGTCGGCGAC 987
|||||| ||| |||||||| | |||||||||||||||| |||||||||||| ||| | |
Sbjct 360 AGATCTGGGA-GAAGCTCA-AGAGTTTCTATTGGAAGTTGTTCACGAGGAAATCGTAGGC 417
Query 988 G-ACAATCCTTTGAAACAACAATACAAGACAGCATCATTGGCT-TCAGAGAATTCCAACG 1045
| | ||||||||||||||||||||||||||| |||| ||||| | |||||||||||| |
Sbjct 418 GAAAAATCCTTTGAAACAACAATACAAGACACCATCGCTGGCTAT-AGAGAATTCCAAAG 476
Query 1046 ACAAAGTTTTCAACAACTTCGTTC-TGGTGCTTTTGACCAAGATGATTACGATGAATTTA 1104
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 477 ACAAAGTTTTCAACAACTTCG-CCTTGGTGGTTTTGACCAAGATGATTACGATGAATTTA 535
Query 1105 AAAAAGCGGAAGCGATATTTATCGCGCTAGATCTTCCCTAGCACACTAGATTTCATTGGG 1164
|||| |||||||||||||| || || ||||| |||||| ||||||| |||||| ||||||
Sbjct 536 AAAAGGCGGAAGCGATATTCATTGCACTAGACCTTCCCAAGCACACAAGATTTTATTGGG 595
Query 1165 CATGCATTAATGCACTTAAAGAGCTAGTATTTTGGCGTAAGTATTTCATTGATATAGCT- 1223
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||
Sbjct 596 CATGCATTAATGCACTTAAAGAACTAGTATTTTGGCGTAAATATTTCATTGACATATCTA 655
Query 1224 GCAAGCACTGACGAGGATAAGGTACAACTGTTAGAAGCTATGAGTGGTGTTTCACGCAAC 1283
| ||||| | ||||||||||| ||||||| ||||||||||||| |||||| ||||| ||
Sbjct 656 G-AAGCAGTAACGAGGATAAGCTACAACTATTAGAAGCTATGACTGGTGTCTCACGAAAA 714
Query 1284 AACCAAGATATGCCAAAACAGTTAGGTTCA-GACCATTCATTTGGGAGTCCAGA-TTCAG 1341
||||||||| ||||||||||||||||| || | ||||||||||||||| || || || ||
Sbjct 715 AACCAAGATGTGCCAAAACAGTTAGGTCCATG-CCATTCATTTGGGAGCCC-GAATTTAG 772
Query 1342 GAGGTATATCATCTGGAAGTCCATCTTC 1369
||||| |||||| |||||||||||||||
Sbjct 773 GAGGTCTATCATATGGAAGTCCATCTTC 800
Score = 331 bits (179), Expect = 2e-89
Identities = 246/278 (88%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 585 GGATGCAAATTAACAAAAAGCTTGAACCGAAAACCACCTGTA-TTTTGGGACGTAATGCA 643
||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||
Sbjct 64 GGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTG-AGTTTTGGGACGTGATGCA 122
Query 644 ACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTTTGCTCGTCAAAGAAG 703
||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 123 ACGATGTTTCGTATTACATGATGTTCAATCACAATCTGAACACTCTGCTCGTCAAAGAAG 182
Query 704 AGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGATAGTGA 763
||||||||| || ||||||||| |||||||||||| || | ||| ||||||| | |||
Sbjct 183 AGAACAATTAATACACGAGCATACAGTTGATGAAGAGGGCCATGATGACTCAGACACTGA 242
Query 764 CAGTGGTAACATGCCACAAACCAAAG-TTCCTGAAACGCTAGAAGAAGAAGAAGTGTATC 822
|||||| || || ||||||| |||| ||||||| |||| ||||||||||||||||||||
Sbjct 243 TAGTGGTGACTTGGCACAAAC-AAAGGTTCCTGATACGCAAGAAGAAGAAGAAGTGTATC 301
Query 823 GTGTTACCATTGATGATGATGAAATATTCCAAA-ATTC 859
||||||| |||||||||||||||| ||| ||| ||||
Sbjct 302 GTGTTACTATTGATGATGATGAAACGTTC-AAATATTC 338
> Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609
Length=813
Score = 472 bits (255), Expect = 9e-132
Identities = 312/340 (92%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 2222 ATGTCACTTCCATGTTTCACGACATTGTGTAATATGTTGCAAACAAATTATGGTCTTCAG 2281
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||
Sbjct 1 ATGTCACTTCCATGTTTCACAACATTGTGTAATATGTTGCAGACAAATTACGGTCTACAA 60
Query 2282 CCAACATTGAATATAAGTATTAAAGAAAGTGTTGCGATGTTTCTACGGATATGTGGGCAC 2341
|||||| | ||||| || ||| |||||||||| || ||||||||||||||||||||||||
Sbjct 61 CCAACACTAAATATTAGCATTGAAGAAAGTGTGGCTATGTTTCTACGGATATGTGGGCAC 120
Query 2342 AATGAAGTTCAAATAGATGTTGGTTTAAGATTTGGACA-AAATCAAGAAACTGTGCAAAG 2400
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 121 AATGAAGTTCAAAGAGATGTTGGTTTAAGATTTGG-CAGAAATCAAGAAACTGTGCAGAG 179
Query 2401 AAAATTTAGAGAAGTTCTTACGGAAACTGAATTATTAGCATGTGATTATATTAGAACTCC 2460
||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 180 AAAATTTAGGGAAGTTCTTACGGCTACTGAATTATTGGCATGTGATTATATCAGAACTCC 239
Query 2461 GACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAAGTAGACCGAAGATATTGGCC 2520
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 240 AACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCAGGTAGATCGGAGATATTGGCC 299
Query 2521 ATATTTTAGTGGATTCGTTGGAGCTATGGATGGGACACAT 2560
|||||||||||||||||||| |||||||||||| || |||
Sbjct 300 ATATTTTAGTGGATTCGTTGAAGCTATGGATGGAACTCAT 339
> Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608
Length=1227
Score = 466 bits (252), Expect = 4e-130
Identities = 347/392 (89%), Gaps = 9/392 (2%)
Strand=Plus/Plus
Query 883 GTAGGCCAAATTTTCAGTCAACCGCTAGACGTGGAAGTAGTGCACAAAGATCT-GGAGGA 941
|||||| |||||| |||||||||||||||||||| |||||| ||||||||||| ||| ||
Sbjct 500 GTAGGCTAAATTTGCAGTCAACCGCTAGACGTGGGAGTAGTTCACAAAGATCTGGGA-GA 558
Query 942 AGCTCACA-AGTTTCTATTGGAAGTGGTTCACGA-GGAAGTCGGCGACGACAATCCTTTG 999
||| || | ||||||||||||||||||||||||| |||| ||| | |||||||| ||||
Sbjct 559 AGCGCA-AGAGTTTCTATTGGAAGTGGTTCACGAGGGAA-TCGTAGGCGACAATCGTTTG 616
Query 1000 AAACAACAATACAAGACAGCATCATTGGCTTCAGAGAATTCCAACGACAAAGTTTTCAAC 1059
| |||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||
Sbjct 617 AGACAACAATACAAGATACCATTGCTGGATACAGAGAATTCCAACGACAAAGTTTTCAAC 676
Query 1060 AACTTCGTTCTGGTGCTTTTGACCAAGATGATTACGATGAATTTAAAAAAGCGGAAGCGA 1119
|||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 677 AACTTCGTCCTGGTGGTTTTGACCAAGATGATTATGATGAATTTAAAAAGGCGGAAGCGA 736
Query 1120 TATTTATCGCGCTAGATCTTCCCTAGCACACTAGATTTCATTGGGCATGCATTAATGCAC 1179
|||| || |||||||| |||||| ||||||| |||||| | ||||||||||||||||||
Sbjct 737 TATTCATTGCGCTAGACCTTCCCAAGCACACAAGATTT--T-GGGCATGCATTAATGCAC 793
Query 1180 TTAAAGAGCTAGTATTTTGGCGTAAGTATTTCATTGATATAGCTGCAAGCACTGACGAGG 1239
|||| || ||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||
Sbjct 794 TTAAGGAACTAGTATTTTGGCGTAAGTATTTCATTGACATATCTGGAAGCAGTAACGAGG 853
Query 1240 ATAAGGTACAACTGTTAGAAGCTATGAGTGGT 1271
||||| ||||||| ||||||||||||| ||||
Sbjct 854 ATAAGCTACAACTATTAGAAGCTATGACTGGT 885
Score = 248 bits (134), Expect = 2e-64
Identities = 235/280 (84%), Gaps = 22/280 (8%)
Strand=Plus/Plus
Query 585 GGATGCAAATTAACAAAAAGCTTGAACCGAAA-ACCACCTGTATTT-TGGGACGTAATGC 642
|||||||||||||||||||||||||||| || ||| |||| | || ||| |||||||||
Sbjct 223 GGATGCAAATTAACAAAAAGCTTGAACC-AACGACCGCCTG-AGTTCTGGAACGTAATGC 280
Query 643 AACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTTTGCTCGTCAAAGAA 702
|||||||| |||| ||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 281 AACGATGTTTCGTCTTATATGATGTTCAATCACAATCTCAACATTCTGCTCGCCAAAGAA 340
Query 703 GAGAACAATTGATCCACGAGCAT------G--GA-GTTGAT-GAA-GAAG-GTG--AAGA 748
|||||||||||||| |||||||| | || | ||| ||| |||| | | ||||
Sbjct 341 GAGAACAATTGATCAACGAGCATCCAATTGATGAAGATGAAAGAAAGAAGAGAGCCAAGA 400
Query 749 TTACTCAGATAG-TGACAGTGGTAACATGCCACAAAC-CAAAGTTCCTGAAACGCTAGAA 806
| ||||||| | ||| |||||| || |||| ||||| ||| |||||||| |||| ||||
Sbjct 401 TGACTCAGAC-GCTGATAGTGGTGACGTGCCTCAAACACAA-GTTCCTGAGACGCAAGAA 458
Query 807 GAAGAAGAAGTGTATCGTGTTACCATTGATGATGATGAAA 846
|||||||||||||| |||||||| ||||||||||||||||
Sbjct 459 GAAGAAGAAGTGTAACGTGTTACAATTGATGATGATGAAA 498
> Ahg497217 jgi|Araly1|497217|fgenesh2_kg.61__1__AT5G28667.1
Length=976
Score = 381 bits (206), Expect = 2e-104
Identities = 421/524 (80%), Gaps = 18/524 (3%)
Strand=Plus/Plus
Query 2441 TGTGATTATAT-TAGAACTCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCA 2499
||||||||||| || ||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 189 TGTGATTATATCAAG-ACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAAAACTGCA 247
Query 2500 AGTAGACCGAAGATATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGG-GACAC 2558
| | || ||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 248 AATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGATGGAGTT-C 306
Query 2559 ATGTGTGCGTAAAAGTAAAGCCTGAGTTACAGGGAATGTATTGGAATCGACACGATA-AT 2617
|||| || || || || |||||||| |||| ||||||||||||||||||||||||| |
Sbjct 307 ATGTATGTGTTAAGGTGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACGATAGAA 366
Query 2618 GCATCCTTGAACATCATGGCAATATGTGATTTGAATATGTTATTCACATATATCTGGAAT 2677
|||| || || |||||||||||||||||| | |||||||| || |||||| | |||||
Sbjct 367 -CATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAAC 425
Query 2678 GGAGTACCAGGTTCTTGCCACGATACAGTTGTTCTG-CAAATAGCACAACA-AAGTGATT 2735
|||| ||| || || || |||||||||| ||||| | | | |||||| | || |||||
Sbjct 426 GGAGCACCTGGATCATGTCACGATACAGCAGTTCTAACGA-TGGCACAAGATAA-TGATT 483
Query 2736 CCGAGTTTCCTTTGCCTCCGTCAGAGAAGTATTATCTGGTTGATTCTTGCTACCCAAACA 2795
|| ||||||||||||| | ||| ||||||||| | ||||||||| | || ||||| |
Sbjct 484 ATGAATTTCCTTTGCCTCTGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAAATA 543
Query 2796 AACAAGGATTTCTAGCTCTTTATAGATCGTCACGAAATCGAG-TTGTGA-GATATCATAT 2853
||||| | ||| | || | ||||||||| || || || || | |||| | | ||||| ||
Sbjct 544 AACAAAGCTTTTTGGCACCTTATAGATCTTCGCGGAA-CGGGGTTGTTATG-TATCACAT 601
Query 2854 GTCTCAATTCTATCC-TGGTCCTCCTCCTAGAAACAAACATGAACTGTTTAACCAATGTC 2912
||| || ||||| | |||||||||||| ||||| ||||| || ||||||| | ||| |
Sbjct 602 GTCACAGTTCTA-CAATGGTCCTCCTCCAAGAAATAAACAAGAGTTGTTTAATCGATGCC 660
Query 2913 ACACATCTTTACGTTCTGTTATCGAGAGAAC-TGTTGGAGTTTG 2955
| ||||| ||||||||||||| || ||||| | ||||||||||
Sbjct 661 ATGCATCTCTACGTTCTGTTATTGAAAGAACAT-TTGGAGTTTG 703
> Ahg480397 jgi|Araly1|480397|fgenesh2_kg.3__3098__AT3G30520.1
Length=1101
Score = 363 bits (196), Expect = 6e-99
Identities = 297/344 (86%), Gaps = 13/344 (4%)
Strand=Plus/Plus
Query 1484 GTGGGGAACACCA-CCAA--ATGCACAGTGGAGCACGTCACCAAATGTTCCACAATGGGG 1540
|||| |||||||| |||| |||||||||| | || ||| ||||| ||||||||||||
Sbjct 764 GTGGAGAACACCACCCAATGTTGCACAGTGGGGAACAACACAAAATGCTCCACAATGGGG 823
Query 1541 AATATCACCAAATGCTCCACAATGGCGGCAA-A-CAGAAAATTTTCAACAAGGTGGTTCA 1598
|| | |||||| ||||||||| ||| || || | || |||| || || | |||| |||
Sbjct 824 AACACCACCAACTGCTCCACAGTGG-GG-AACACCACCAAATACTCCAC-A-GTGGGTCA 879
Query 1599 AGCGGAACGACTCCAACAAATGTTCAATATGGTTTTTCAGTTGGAGGTCAAGGAGATGGT 1658
| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 880 ACCGGAACAACTCCAACAAATGTTCAATATGGATTTTCAGTTGGAGGCCAAGGAGATGGT 939
Query 1659 GCAACAACT-GAAACTCCACCAATAATTCAACAAACATCATCATCTGGTCTCGGTTTCCC 1717
||||| | | |||||| |||| || ||||||| |||||||||||| |||||||||||| |
Sbjct 940 GCAAC-AGTAGAAACTTCACCGATCATTCAACGAACATCATCATCCGGTCTCGGTTTCAC 998
Query 1718 AAATTATTTTGAAACTGGACAAATGCCACAAACACCTAGACGAGGG-GGTCTCTTTAATA 1776
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 999 AAATTATTTTGAAACTGGACAAATGCCACAAACACCTAGACC-GGGAGGTCTCTTCAATA 1057
Query 1777 TTTGGGGAACTCCGCAAGGATCCAACGCAAGTCATCACAGTGAT 1820
|||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 1058 TTTGGGGAACTCCGAAAGGATCCAATGCAAGTCATCAAAGTGAT 1101
Score = 257 bits (139), Expect = 3e-67
Identities = 172/188 (91%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 1014 GACAGCATCATTGGCT-TCAGAGAATTCCAACGACAAAGTTTTCAACAACTTCGTTCTGG 1072
|||| |||| ||||| | ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 448 GACACCATCGCTGGCTAT-AGAGAATTCCAACGACAAAGTTTTCAATAACTTCGCCCTGG 506
Query 1073 TGCTTTTGACCAAGATGATTACGATGAATTTAAAAAAGCGGAAGCGATATTTATCGCGCT 1132
|| ||||||||||||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 507 TGGTTTTGACCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTCATTGCACT 566
Query 1133 AGATCTTCCCTAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAAGAGCTAGT 1192
| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 567 AAATCTTCCCAAGCACACTAGATTTTATTGGGCATGCATTAATGCACTTAAAGAGCTAGT 626
Query 1193 ATTTTGGC 1200
||||||||
Sbjct 627 ATTTTGGC 634
Score = 158 bits (85), Expect = 3e-37
Identities = 96/101 (95%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 585 GGATGCAAATTAACAAAAAGCTTGAACCGAAAACCACCTGTA-TTTTGGGACGTAATGCA 643
||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||
Sbjct 97 GGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTG-AGTTTTGGGACGTGATGCA 155
Query 644 ACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAAC 684
||||||| |||||||||||||||||||||||||||||||||
Sbjct 156 ACGATGTTTCGTATTACATGATGTTCAATCACAATCTCAAC 196
> Ahg494740 jgi|Araly1|494740|fgenesh2_kg.8__556__AT5G28667.1
Length=954
Score = 359 bits (194), Expect = 7e-98
Identities = 382/472 (81%), Gaps = 15/472 (3%)
Strand=Plus/Plus
Query 2441 TGTGATTATAT-TAGAACTCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCA 2499
||||||||||| || ||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 189 TGTGATTATATCAAG-ACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAAAACTGCA 247
Query 2500 AGTAGACCGAAGATATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGGA-CAC 2558
| | || ||||||||||||||||||||||||||||| ||||||||||| ||| ||| |
Sbjct 248 AATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGAT-GGAGTTC 306
Query 2559 ATGTGTGCGTAAAAGTAAAGCCT-GAGTTACAGGGAATGTATTGGAATCGACACGATA-A 2616
|||| || || || || |||||| || |||| ||||||||||||||||||||||||| |
Sbjct 307 ATGTATGTGTTAAGGTGAAGCCTGGAACTACAAGGAATGTATTGGAATCGACACGATAGA 366
Query 2617 TGCATCCTTGAACATCATGGCAATATGTGATTTGAATATGTTATTCACATATATCTGGAA 2676
|||| || || |||||||||||||||||| | |||||||| || |||||| | |||||
Sbjct 367 A-CATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAA 425
Query 2677 TGGAGTACCAGGTTCTTGCCACGATACAGTTGTTCTG-CAAATAGCACAACA-AAGTGAT 2734
|||| ||| || || || |||||||||| ||||| | | | |||||| | || ||||
Sbjct 426 CGGAGCACCTGGATCATGTCACGATACAGCAGTTCTAACGA-TGGCACAAGATAA-TGAT 483
Query 2735 TCCGAGTTTCCTTTGCCTCCGTCAGAGAAGTATTATCTGGTTGATTCTTGCTACCCAAAC 2794
|| || ||||||||||||||| ||| ||||||||| | ||||||||| | || |||||
Sbjct 484 TCTGAATTTCCTTTGCCTCCGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAAAT 543
Query 2795 AAACAAGGATTTCTAGCTCTTTATAGATCGTCACGAAATCGAG-TTGTGAGATATCATAT 2853
|||||||| ||| | || | ||||||||| || || || || | |||| || ||||| ||
Sbjct 544 AAACAAGGCTTTTTGGCACCTTATAGATCTTCGCGGAA-CGGGGTTGTTAGGTATCACAT 602
Query 2854 GTCTCAATTCTATCC-TGGTCCTCCTCCTAGAAACAAACATGAACTGTTTAA 2904
||| || ||||| | |||||||||||| ||||| ||||| || |||||||
Sbjct 603 GTCACAGTTCTA-CAATGGTCCTCCTCCAAGAAATAAACAAGAGTTGTTTAA 653
> Ahg906119 jgi|Araly1|906119|Al_scaffold_0003_3247
Length=552
Score = 250 bits (135), Expect = 5e-65
Identities = 190/216 (88%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 987 CGACAATCCTTTGAAACAACAATACAAGACAGCATCATTGGCTTCAGAGAATTCCAACGA 1046
|||||||| ||||| |||||||||||||| | |||| ||||| ||||||||||||||||
Sbjct 168 CGACAATCGTTTGAGACAACAATACAAGATACCATCGCTGGCTACAGAGAATTCCAACGA 227
Query 1047 CAAAGTTTTCAACAACTTCGTTCTGGT-GCTTTTGACCAAGATGATTACGATGAATTTAA 1105
||||||||||||||||||||| || || | |||||||||||||||||| |||||||| ||
Sbjct 228 CAAAGTTTTCAACAACTTCGTCCTAGTTGGTTTTGACCAAGATGATTATGATGAATTGAA 287
Query 1106 AAAAGCGGAAGCGATATTTATCGCGCTAGATCTTCCCTA-GCACACTAG-ATTTCATTGG 1163
||| |||||||||||||| || |||||||| ||||| || ||||| ||| |||| |||||
Sbjct 288 AAAGGCGGAAGCGATATTCATTGCGCTAGACCTTCC-TAAGCACA-TAGGATTTTATTGG 345
Query 1164 GCATGCATTAATGCACTTAAAGAGCTAGTATTTTGG 1199
|||||||||||| ||| ||| || ||||||||||||
Sbjct 346 GCATGCATTAATACACATAAGGAACTAGTATTTTGG 381
Score = 220 bits (119), Expect = 4e-56
Identities = 149/164 (91%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 1341 GGAGGTATATCATCTGGAAGTCCATCTTCAGTGGGTAATAATTTGGGAGGGCAAAATTCA 1400
|||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||| |||
Sbjct 382 GGAGGTCTATCATCTGGAAGTCCATCTTCTGTGGGTAATAATTTAGGAGGGCGAAACTCA 441
Query 1401 CCCGGTTTTTGGGGTCCCATTTATCCACAGTGGGGAACACCACCAAACGTTGCACAGTGG 1460
||||||| |||||||||| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 442 CCCGGTTGTTGGGGTCCCGTTTATCCACAGTGGGGAACACCACCAAATGCTCCACAGTGG 501
Query 1461 GGAACACAACCAAATACTCCATAGTGGGGAACACCACCAAATGC 1504
|||||| ||||||| ||||| ||||||| ||||||||||||||
Sbjct 502 AGAACACCACCAAATGCTCCACAGTGGGGTACACCACCAAATGC 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111604417850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5