BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44060.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657 942 0.0
Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878 405 4e-112
Ahg952164 jgi|Araly1|952164|scaffold_42800001.1 263 3e-69
Ahg936896 jgi|Araly1|936896|scaffold_501087.1 239 4e-62
Ahg915934 jgi|Araly1|915934|Al_scaffold_0008_685 182 7e-45
> Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657
Length=1272
Score = 942 bits (510), Expect = 0.0
Identities = 879/1049 (84%), Gaps = 58/1049 (6%)
Strand=Plus/Plus
Query 1 ATGGATTGTCTTCCAGATGATCTCCTTGTCCAAATCTTATATTTACTTCCCACGAAAGAG 60
||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||
Sbjct 1 ATGGATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTATCCTTCCTTCCTACGAAAGAA 60
Query 61 GCTGTTTCAACCTCTGTTCTCTCCAAGAGATGGAGGACTCTGTTTACTCGCAGTGATAAT 120
||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||| |||||
Sbjct 61 GCTGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAGGACTCTGTTTACTCTCAGTCATAAT 120
Query 121 CTTGACTTTCACGATCCCATCTCCGGGCGCCCCGAAGATATCCTAAAGAGTTTCAATGAT 180
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 121 CTTGACTTTGACGATCCCATCTCCGGGCGCCCCGAAGATATCCGAAAAAGTTTCGGTGAT 180
Query 181 TTCGTGGACAGTTCATTAGCTTTTCAAGGTGGTAAACATATAAAAAAGTTCTCACTT--- 237
|| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 181 TTTGTGGACAGTTCATTGGCTTTCCAAGGCGGTAAACATATAAAGAAGTTCTCACTTAAA 240
Query 238 CATACT-AAA-AT-T-AA-AACATTTGAATATCACGTACTTGACCGCTGGATTTGTAATG 292
|||||| ||| || | || || | ||| || ||| ||||||| ||||| ||||| |
Sbjct 241 CATACTGAAATATATGAAGAAGA--AGAACATAACG---TTGACCGATGGATATGTAAGG 295
Query 293 CCCTGGAACACGGTGTCTCTGA-----A-CTTCATCTACACCTAATG-CATGAATCGTGG 345
|||||||||||||||||||||| | || ||||||||| ||| | | | ||| || |
Sbjct 296 CCCTGGAACACGGTGTCTCTGAGCTCCATCTACATCTACACGTAAAGTC-TAAATTGT-G 353
Query 346 CCGTGGTTGTTTTCTATCCCATCTAAAGTTTTCAACAGCTCAACACTGGTTAAGCTGTCA 405
|||| ||||||||| ||||| ||||| |||| |||| ||||||| ||||||||||||
Sbjct 354 --GTGGGAGTTTTCTATACCATCCAAAGTCTTCACCAGCACAACACTAGTTAAGCTGTCA 411
Query 406 TTGGGATCGA-GACTATACTGCCCAAGTTTTCCTCCGGATACATCTCTCCCAGCACTAAA 464
||||| | | ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 412 CTGGGAAC-AGGACTAGACTGCCCAAGACTTCCTCCGGATACATCTCTCCCAGCACTAAA 470
Query 465 GGTTCTGCTCCTTGATTCAATC-T-T-GTTTCGGGATGATCAATTATCTAATGTGTTTCT 521
|||||| ||||||||||||||| | | |||| || |||||||||||||||||||| ||||
Sbjct 471 GGTTCTCCTCCTTGATTCAATCTTCTGGTTTAGGCATGATCAATTATCTAATGTGCTTCT 530
Query 522 CGCTGCATGCCCTGCACTTGAGGACTTAACCATACATCAC-ACG---TAT-C---AC--C 571
||||||||||||||||||||||||||||||||||||| || | | ||| | ||
Sbjct 531 CGCTGCATGCCCTGCACTTGAGGACTTAACCATACATTACGA-GTATTATCCAGGACATT 589
Query 572 CATGCGTCATATCCAGCAAAAGCATTAAGAAACTTTCACTTAGCGTTAACAGTGGTTATT 631
||| |||||||||||||||||||||||||||||| ||| ||| | |||| ||| ||||||
Sbjct 590 CATACGTCATATCCAGCAAAAGCATTAAGAAACTCTCAGTTACCATTAATAGTAGTTATT 649
Query 632 ATGGTGCTGG-T-TAT-ATTCTTACACTTGACACGCC-AAGTGTTGTCGACCTCTACTAC 687
||| || | | || ||||||||||||||||| || || ||||| |||||||||||||
Sbjct 650 ATGTTGATCAATCTAGCATTCTTACACTTGACACACCTAA-TGTTGCCGACCTCTACTAC 708
Query 688 TCTGATTCCCCTCGGCATAACGCTCCACTTTTTCATTTAGATTCACTTGCGAAAGTTACA 747
||||||| ||||||| ||| |||||| || ||| || |||||| |||| |||| ||||
Sbjct 709 TCTGATTATCCTCGGCGTAAATCTCCACGTTGTCAATTGGATTCAGTTGCAAAAGCTACA 768
Query 748 TTGGACCTTCATTTCATAGAAA-ATAACAATCGCGAGGTGCAAAA-TGACGCTGATGTGA 805
||| ||||||||||| || ||| || | |||| ||||| |||| |||||| |||||||
Sbjct 769 TTGAACCTTCATTTCTTA-AAAGATTA---TCGCCAGGTG-AAAAGTGACGCGGATGTGA 823
Query 806 AAAATCTCATTAG-GGAGATATGCAACGTCAAGACCCTTCACTTGACTTGTTCT-ACAGT 863
||||||| || || |||| | |||||||||||||||||||||||| ||| || ||
Sbjct 824 CCGATCTCATCAGTGG-GATACGTAACGTCAAGACCCTTCACTTGACTA-TTCCGACTGT 881
Query 864 CGAGGTGATTTCCGTATACTGCAAAGGTGGACTACCAATGTTCAACAACCTTGTTGAGTT 923
| | ||||||| |||| ||||||||||| |||||| ||||||||||||| ||||| ||
Sbjct 882 CAAAGTGATTTTGGTATGCTGCAAAGGTGAACTACCGGTGTTCAACAACCTCGTTGATTT 941
Query 924 AGTGTTTTCGAGTAAAA-AGGAAGGTTGGAGAGTGCTTCTGCCTCTTCTGCTAGAGAATT 982
| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||
Sbjct 942 AATGTTTTCGAGTAAAAGAC-AAGGTTGGAAAGTGCTTCTGCCTCTTCTGCTAGAGCGTT 1000
Query 983 CTCCAAACCTTGAAACTCTGGTTCTCTCG 1011
|||||||||| ||| ||| ||||||||
Sbjct 1001 CTCCAAACCTAAAAAATCTTATTCTCTCG 1029
> Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878
Length=948
Score = 405 bits (219), Expect = 4e-112
Identities = 350/414 (85%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 868 GTGATTTCCGTATACTGCAAAGGTGGACTACCAATGTTCAACAACCTTGTTGAGTTAGTG 927
|||||||| ||| |||||| |||||| |||| ||||||||||||| ||||| ||||||
Sbjct 532 GTGATTTCTATATGCTGCAATGGTGGATTACCGGTGTTCAACAACCTCGTTGATTTAGTG 591
Query 928 TTTT-CGAGTA-AAAAGGAAGGTTGGAGAGTGCTTCTGCCTCTTCTGCTAGAGAATTCTC 985
|||| || ||| |||| | |||||||| | |||| |||| |||||||||||| |||||
Sbjct 592 TTTTCCG-GTACAAAAAG-AGGTTGGAAACAGCTTTTGCCACTTCTGCTAGAGCGTTCTC 649
Query 986 CAAACCTT-GAAACTCTGGTTCTCTCGGATCTGCATCGTTACACATTTGGACGAAGACAT 1044
| || ||| ||| |||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 650 CGAA-CTTAAAAAATCTGGTTCTCTCGGGTCTACATAATTACACATTTGGACGAAGACAT 708
Query 1045 CGGTTTGTAGGGATTCCAATTCCCCCGAATAACCAAATAAAGGTACTGCGTATCATGCAG 1104
|||||||||||||||| ||| ||| ||||| |||||||||| | || |||||| |||
Sbjct 709 CGGTTTGTAGGGATTCAAATACCCTTGAATATCCAAATAAAGATGCTTAGTATCAAGCAA 768
Query 1105 TACCAAGGAAGTGCAACTGTACTGAAACACATTAGTCATTTCTTACTGAATATGGATTGT 1164
|| || ||||||||||| || |||||||||||||| |||||||||||||||||||| | |
Sbjct 769 TATCATGGAAGTGCAACCGTGCTGAAACACATTAGCCATTTCTTACTGAATATGGAATAT 828
Query 1165 CTTGAAGTTATGAAAGTCAACGTTGCAGCTGCATTGGATGACCCCAAAAAGATGCAGCTC 1224
|||||||| ||||||| |||||||||||| | |||||||| ||||||||||||| |||
Sbjct 829 CTTGAAGTGGTGAAAGTTTACGTTGCAGCTGAAATGGATGACACCAAAAAGATGCAACTC 888
Query 1225 ACAGAGGATCTGTTAAAGCTTCCCACAGCTTCATGCAAGCTCAAGATTCAAGTC 1278
||||||| |||||| ||| |||| |||||||||| ||||||| |||| || |||
Sbjct 889 ACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCATCCAAGCTCGAGATACAGGTC 942
Score = 250 bits (135), Expect = 2e-65
Identities = 343/439 (78%), Gaps = 32/439 (7%)
Strand=Plus/Plus
Query 364 CCATCTAAAGTTTTCAACAGCTCAACACTGGTTAAGCTGTCATTGGGATCGAG-ACTATA 422
||||| |||| |||| |||| |||| |||||||| |||||| ||||| | || || |||
Sbjct 67 CCATCCCAAGTCTTCACCAGCACAACGCTGGTTAATCTGTCACTGGGAAC-AGAACAATA 125
Query 423 CTGCCCA-AG-TTTTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTGCTCCTTGAT 480
| | || |||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct 126 C-ATTGATAGCTTTT-CTGCGAATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGAT 183
Query 481 TCAATCTTGTTT--CGGGATGATCAATTATCTAA-TGTGTTTCTCGCTGCATGCCCTGCA 537
||||||| |||| | | || ||||||| | ||| ||| |||||| |||| |||||||||
Sbjct 184 TCAATCT-GTTTTACAG-ATAATCAATTGT-TAAATGTATTTCTCACTGCTTGCCCTGCA 240
Query 538 CTTGAGGACTTAACCATACATCAC-ACG-----T-A--T-CACCCATGCGTCATATCCAG 587
|||||||||||||| ||||||||| | | | | | || ||| ||||||||| ||
Sbjct 241 CTTGAGGACTTAACGATACATCACGA-GAAAAATGAAGTACAATCATACGTCATATCTAG 299
Query 588 CAAAAGCATTAAGAAACTTTCACTTAGCGTTAACAGTGGTTA-TTATGGTGCTGGTTA-- 644
||||| ||| || ||||| || ||| | |||| | | || |||| || | |
Sbjct 300 CAAAACCATCAAAAAACTCTCTGTTACCATTAA-ATTTAATAATTATCTTGATTCTCCCG 358
Query 645 T-ATTCT-TACACTTGACACGCCAAGTGTTGTCGACCTCTACTACTCTGATTCCCCTCGG 702
| ||| | | || ||||||| || |||||||||||||||||||||||||||| | ||||
Sbjct 359 TCATTATAT-CAATTGACACACCTAGTGTTGTCGACCTCTACTACTCTGATTATCGTCGG 417
Query 703 CATAACGCTCCACTTTTTCATTTAGATTCACTTGCGAAAGTTACATTGGACCTTCATTTC 762
||||| |||||| || ||| || ||||||||||| |||| |||||||||||||||||||
Sbjct 418 CATAAATCTCCACGTTGTCAATTGGATTCACTTGCCAAAGCTACATTGGACCTTCATTTC 477
Query 763 ATAGAAAATA-ACAATCGC 780
||||||| | |||| |||
Sbjct 478 TTAGAAAA-AGACAAGCGC 495
> Ahg952164 jgi|Araly1|952164|scaffold_42800001.1
Length=1040
Score = 263 bits (142), Expect = 3e-69
Identities = 331/419 (79%), Gaps = 26/419 (6%)
Strand=Plus/Plus
Query 157 GATATCCTAA-AGAG-TTTCAATGATTTCGTGGACAGTTCATTAGCTTTTCAAGGTGGT- 213
||| ||| || |||| ||| |||||||| ||||| | |||| ||||| |||| ||
Sbjct 105 GATGTCC-AAGAGAGATTT-AATGATTTTGTGGATAAAGCATTCGCTTTGAAAGGCAGTG 162
Query 214 AAACATATAAAAAAGTTCTCACTTCATACTAAAATTAAAACAT-T--TG-AATATCACGT 269
||| |||| || |||||||||||| | ||| | || ||||| | | || || | |
Sbjct 163 AAA-ATATTAACAAGTTCTCACTT-AAACT--TAGTAGAACATATAAAGAAAAATTATAT 218
Query 270 -AC-TTGACCGCTGGATTTGTAATGCCCTGGAACACGGTGTCTCTGAACTTCATCTACAC 327
|| ||||||||||||| ||||||||||||||||| ||| |||| || |||||||| ||
Sbjct 219 AACATTGACCGCTGGATATGTAATGCCCTGGAACAAGGTATCTCCGAGTTTCATCTAGAC 278
Query 328 CTAATGCATGAATCGTGGCCGTGGTT-GTTTTCTATCCCATCTAAAGTTTTCAACAGCTC 386
||| | | | | ||| ||||| | | | |||||||| |||| |||| |||| |
Sbjct 279 ATAAAACCT--A-CATGG-TATGGTTGGCATGATCTCCCATCTGAAGTCTTCACCAGCAC 334
Query 387 AACACTGGTTAAGCTGTCATTGGGATCGAGACTATACTGCCCAA-GTTTTCCTCCGGATA 445
||||||||||||||||||||||||| | | |||| || |||| | ||||| ||||||
Sbjct 335 AACACTGGTTAAGCTGTCATTGGGAACAACACTACGTTG-CCAAGGACTTCCTTCGGATA 393
Query 446 CATCTCTCCCAGCACTAAAGGTTCTGC-TCCTTGATTCAATCTTGTTTCG-GGATGATCA 503
|||||||||||||||||||| |||| | |||||||||||||||| ||| | ||| |||||
Sbjct 394 CATCTCTCCCAGCACTAAAGATTCT-CTTCCTTGATTCAATCTTATTT-GAGGAGGATCA 451
Query 504 ATTATCTAATGTGTTTCTCGCTGCATGCCCTGCACTTGAGGACTTAACCATACATCACA 562
|| || | |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 452 ATCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACA 510
> Ahg936896 jgi|Araly1|936896|scaffold_501087.1
Length=804
Score = 239 bits (129), Expect = 4e-62
Identities = 347/446 (78%), Gaps = 39/446 (9%)
Strand=Plus/Plus
Query 272 TTGACCGCTGGATTTGTAATGCCCTGGAACACGGTGTCTCTGAACTTCATCTACACCTA- 330
|||| |||||||| ||||| ||||||||||||||||||||||| |||||||||| | ||
Sbjct 355 TTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTACGCATAC 414
Query 331 ATGCATGAA---TCGTGGCCGTGGTTGTTTTCTATCCCATCTAAAGTTTTCAACAGCTCA 387
| ||||| | |||||||| | || | | ||||||| |||| |||| |||| ||
Sbjct 415 A-AAATGAATTGTTGTGGCCGT-G-TGGTGGAT-TCCCATCCGAAGTCTTCACCAGCACA 470
Query 388 ACACTGGTTAAGCTGTCATTGGGATCGAGACTAT-AC-TGCCCAAGTTTTCCTCCGGATA 445
|||||||||||||||||||||||| | ||| | | || | || | | ||||| |||||
Sbjct 471 ACACTGGTTAAGCTGTCATTGGGAACAAGA-TCTCACAT-CCTTACTATTCCTTGGGATA 528
Query 446 CATCTCTCCCAGCACTAAAGGTTCTGC-TCCTTGATTCAATCTTGTTTCGGGATGATCAA 504
||| ||| ||||||||||||||||| | ||||||||||||| | |||| ||| ||| ||
Sbjct 529 CATATCTGCCAGCACTAAAGGTTCT-CTTCCTTGATTCAATATGGTTTAAGGACGATAAA 587
Query 505 TTATCT-AATGTGTTTCTCGCTGCATGCCCTGCACTTGAGGACTTAACCATACATCAC-A 562
||| | ||||||||||||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 588 CTAT-TGAATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACATGAAGA 646
Query 563 C--GTATCACCCATGC-G---TCATATCCAGCAAAAGCATTAAGAAACTTTCACTTAGCG 616
|||| | | || | ||||||| ||||||| |||||||| ||| ||| ||| |
Sbjct 647 GATGTAT-AGAAAGGCAGAGGTCATATCAAGCAAAACCATTAAGAGACTCTCAGTTACC- 704
Query 617 T-TAACAGTGGT---TATT---ATGGTGCTGGTTAT-ATTCTTACACTTGACACGCCAAG 668
| ||||| | || |||| ||| | |||| || ||| | |||||||||| || |
Sbjct 705 TATAACACTAGTGAATATTTCTATGATTCTGGC-ATTATT-T--CACTTGACACACCGTG 760
Query 669 TGTTGTCGACCTCTACTACTCTGATT 694
|| || |||||||||||||||||||
Sbjct 761 TGATG--GACCTCTACTACTCTGATT 784
Score = 171 bits (92), Expect = 2e-41
Identities = 194/242 (80%), Gaps = 12/242 (5%)
Strand=Plus/Plus
Query 4 GATTGTCTTCCAGATGA-TCTCCTTGTCCAAATCTTATATTTACTTCCCACGAAAGAGGC 62
||||||||||||||||| | | ||| |||||||||| | |||||||| |||||||| ||
Sbjct 48 GATTGTCTTCCAGATGATTGT-CTTATCCAAATCTTGTCCTTACTTCCTACGAAAGAAGC 106
Query 63 TGTTTCAACCTCTGTTCTCTCCAAGAGATGGAGGACTCTGTTTACTCGCAGTGATAATCT 122
||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 107 TGTTTCAACCTCTCTTCTCTCCAAGAGATGGAGGACTCTGTTTGCTTTCAGTCCTAATCT 166
Query 123 TGACTTTCACGATCCCATCTCCGGGCGCCCCGAA--GA-TATCCTAAAGAGTTTCAATG- 178
|||| | ||||| |||||| | | ||||||| || || | ||||| |||| |
Sbjct 167 AGACTGTAACGATTCCATCTTTTGTCACCCCGAAAAGAGTAAACGGAAGAGCTTCAG-GC 225
Query 179 ATTTCGTGGACAGTTCATTAGCT--TTT-CAAGGTGGTAAACA-TATAAAAAAGTTCTCA 234
|||||||| ||| | |||| ||| ||| ||||| |||| | |||||| |||||||||
Sbjct 226 ATTTCGTGTACAATACATTGGCTAATTTGCAAGGCCGTAA-CTGTATAAAGAAGTTCTCA 284
Query 235 CT 236
||
Sbjct 285 CT 286
> Ahg915934 jgi|Araly1|915934|Al_scaffold_0008_685
Length=417
Score = 182 bits (98), Expect = 7e-45
Identities = 311/411 (76%), Gaps = 25/411 (6%)
Strand=Plus/Plus
Query 495 GGATGATCAATTATCTAATGTGTTTCTCGCTGCATGCCCTGCACTTGAGGACTTAACCAT 554
||| ||||||| || | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 15 GGAGGATCAATCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCAT 74
Query 555 ACATCACAC-G--TATCACCCA--TGC----GTCATATCCAGCAAAAGC-ATTAAGAAAC 604
|||| ||| | ||||| | | | ||| |||||||||||| | ||||| ||||
Sbjct 75 ACATTACAAAGAATATCAAGGAAATTCATATGTCGTATCCAGCAAAA-CTATTAAAAAAC 133
Query 605 TTTCACTTAGCGTTAACAGTGGTTATTA-TGGTGCTGGTTATAT--TC-TTACACTTGAC 660
| || ||| | ||| | ||||| || | |||| || || | || || |||||
Sbjct 134 TCTCGGTTACCTTTAGCTTTGGTT-TTGCTTATGCTATTTCTAGAATAATTTCATTTGAC 192
Query 661 ACGCCAAGTGTTGTCGACCTCTACTACTCTGATTCCCCTCG-GCATAACGCTCCACTTTT 719
|| |||| |||||||||| ||||||||||||||| | | | || | ||||| |
Sbjct 193 ACACCAAATGTTGTCGACTTCTACTACTCTGATTATATTTGTGAAT--C--TCCACAATG 248
Query 720 TCATTTAGATTCACTTGCGAAAGTTACATTGGACCTTCATTTCATAGAAA-ATAACAATC 778
|| | ||||||||||| |||| || ||||||||| ||||| | || || |||| |
Sbjct 249 TCGCTGGGATTCACTTGCCAAAGCAACGTTGGACCTTTATTTCTTT-AATGATGACAAGC 307
Query 779 GCGAGGTGCAAAATGACGCTGATGTGAAAAATCTCATTAG-GGAGATATGCAACGTCAAG 837
|| | |||||||||| ||| || |||| ||||||| | || |||| |||| ||||||
Sbjct 308 GCTATGTGCAAAATGGCGCGGAGGTGACTGATCTCATCACTGG-GATACGCAATGTCAAG 366
Query 838 ACCCTTCACTTGACTTGTTCTACAGTCGAGGTGATTTCCGTATACTGCAAA 888
|||||||||||||||| |||||| ||||||||||||| |||| ||||||
Sbjct 367 ACCCTTCACTTGACTTCTTCTACTGTCGAGGTGATTTTGGTATGGTGCAAA 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5