BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44070.1

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323654 jgi|Araly1|323654|fgenesh1_pm.C_scaffold_5001198           183    1e-45
  Ahg947373 jgi|Araly1|947373|scaffold_703602.1                        158    8e-38


> Ahg323654 jgi|Araly1|323654|fgenesh1_pm.C_scaffold_5001198
Length=840

 Score =  183 bits (99),  Expect = 1e-45
 Identities = 216/270 (80%), Gaps = 17/270 (6%)
 Strand=Plus/Plus

Query  453  CAACCTCACGCATCGGAGTACCGTC-T--TTGCTCGAGCCCTTGTCAAAGCACTACCTCG  509
            ||||||||  ||||  || ||| || |  ||||||||  |||||||||||||||||||||
Sbjct  474  CAACCTCAAACATCATAGCACCTTCATCCTTGCTCGAAACCTTGTCAAAGCACTACCTCG  533

Query  510  TGTAGTTTGTT-TGGTGCCGCCGAGTTTCACGTCTTTGACCC-TTACACCAACGCCACTT  567
            |||||||  || | |||||| ||||   | || ||||| ||| || ||||||||| ||||
Sbjct  534  TGTAGTTC-TTCTCGTGCCGGCGAGAACCTCGACTTTGGCCCATT-CACCAACGCTACTT  591

Query  568  CGTCTCTTGACAATGACGAATT-GTTCTTCCTTTGATTTGCTCTTGGAAGATTTGTCGAT  626
            |||||||||||| || | | || || || || |||| | |||||||||||| | ||||||
Sbjct  592  CGTCTCTTGACAGTGGCTACTTTGTCCT-CCGTTGACTCGCTCTTGGAAGACTCGTCGAT  650

Query  627  T-TCTTTTGATCTCACTTGCACCAACAAA--TTACCTAGCTTTTGGTTCAAAGCCCTCAA  683
            | | |||||||||||| || ||||| |||  || |  ||||||||| ||||||| |||||
Sbjct  651  TAT-TTTTGATCTCACATGTACCAA-AAAGCTT-CAAAGCTTTTGGCTCAAAGCTCTCAA  707

Query  684  GGATTTGAT-ATCGATTAACCCTATCTATC  712
            | | || || ||||||||||| ||||||||
Sbjct  708  GAAGTT-ATTATCGATTAACCTTATCTATC  736


> Ahg947373 jgi|Araly1|947373|scaffold_703602.1
Length=480

 Score =  158 bits (85),  Expect = 8e-38
 Identities = 195/247 (79%), Gaps = 12/247 (5%)
 Strand=Plus/Plus

Query  479  TTGCTCGAGCCCTTGTCAAAGCACTACCTCGTGTAGTTTGTT-TGGTGCCGCCGAGTTTC  537
            ||||||||  ||||||||||||||||||||||||||||  || | |||||| ||||  ||
Sbjct  172  TTGCTCGAAACCTTGTCAAAGCACTACCTCGTGTAGTTC-TTCTCGTGCCGGCGAGAATC  230

Query  538  ACGTCTTTGACCCTTACACCAACGCCACTTCGTCTCTTGACAATGACGAATTGTT-CTTC  596
             || |||||  || | |||||||||||||||||||||||| | || | |||| || || |
Sbjct  231  TCGACTTTGGTCCATCCACCAACGCCACTTCGTCTCTTGATAGTGGCTAATTTTTTCT-C  289

Query  597  CTTTGATTTGCTCTTGGAAGATTTGTCGATT-TCTTTTGATCTCACTTGCACCAACAAA-  654
            | |||| | |||||||||||| |  || ||| | |||||||||||| || ||||| ||  
Sbjct  290  CGTTGACTCGCTCTTGGAAGACTCATCAATTAT-TTTTGATCTCACATGTACCAA-AATG  347

Query  655  -TTACCTAGCTTTTGGTTCAAAGCCCTCAAGGATTTGAT-ATCGATTAACCCTATCTATC  712
             || | || ||||||| ||||| | || ||| | || || ||||||||||  ||||||||
Sbjct  348  CTT-CATAACTTTTGGCTCAAAACTCTTAAGAAGTT-ATTATCGATTAACTTTATCTATC  405

Query  713  CCTTTAT  719
              |||||
Sbjct  406  TTTTTAT  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30727071102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5