BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44096.1
Length=3799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657 411 3e-113
Ahg937029 jgi|Araly1|937029|scaffold_501220.1 316 6e-85
Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878 287 5e-76
Ahg915934 jgi|Araly1|915934|Al_scaffold_0008_685 233 6e-60
Ahg952164 jgi|Araly1|952164|scaffold_42800001.1 182 2e-44
Ahg936896 jgi|Araly1|936896|scaffold_501087.1 182 2e-44
Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009 152 2e-35
Ahg897261 jgi|Araly1|897261|Al_scaffold_0005_1227 65.8 2e-09
> Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657
Length=1272
Score = 411 bits (222), Expect = 3e-113
Identities = 421/514 (82%), Gaps = 26/514 (5%)
Strand=Plus/Plus
Query 259 CCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-AACCCAACA 317
|||||| |||| ||||||||||||||||| |||||||||||| | ||||| | | | |
Sbjct 370 CCATCCAAAGTCTTCACCAGCACAACACTAGTTAAGCTGTCACT-GGGAACAGGACTAGA 428
Query 318 CAT--CTATGAGTTTTCTCCTGATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTTGAT 375
| | | | || || |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 429 C-TGCCCAAGA-CTTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGAT 486
Query 376 TC--T-ATCTGGTTTTGGAAAT-ATCCATTAGCAAATGTATTTTTCGCTGCTTGCCCTGC 431
|| | |||||||| || || ||| |||| | ||||| || ||||||| ||||||||
Sbjct 487 TCAATCTTCTGGTTTAGG-CATGATCAATTATCTAATGTGCTTCTCGCTGCATGCCCTGC 545
Query 432 ACTTGAGGACTTAACCATACGTTAC-AATAATTTTAGAGGA-AGTTCATACGTTATATCC 489
|||||||||||||||||||| |||| | | ||| | |||| | ||||||||| ||||||
Sbjct 546 ACTTGAGGACTTAACCATACATTACGAGT-ATTATCCAGGACA-TTCATACGTCATATCC 603
Query 490 AGCAAAAGCATTAAGAAACTCTCAGTTATCAATAGCAGTAGTTGTTATGATGGTCA-TCA 548
|||||||||||||||||||||||||||| || || ||||||| ||||| || ||| ||
Sbjct 604 AGCAAAAGCATTAAGAAACTCTCAGTTACCATTAATAGTAGTTATTATGTTGATCAATC- 662
Query 549 TAGCGTTATTACACTTGATACACCCAATGTTGTCGACTTCTACTACTCTGGTTTTCTTCA 608
|||| || |||||||||| ||||| ||||||| |||| |||||||||||| || || ||
Sbjct 663 TAGCATTCTTACACTTGACACACCTAATGTTGCCGACCTCTACTACTCTGATTATCCTCG 722
Query 609 GCCTAAAGATCCACATTGT-AATTTAGATTCACTTGCCAAAGCTACACTGGACCTTCATT 667
|| |||| ||||| |||| |||| |||||| |||| ||||||||| || |||||||||
Sbjct 723 GCGTAAATCTCCACGTTGTCAATTG-GATTCAGTTGCAAAAGCTACATTGAACCTTCATT 781
Query 668 TCTTAGAAGATGACAATAGCCAGGTGCAAAA-TGACGCGGATGTAAAAAATCTCATCAA- 725
||||| ||||| | | |||||||| |||| |||||||||||| | |||||||||
Sbjct 782 TCTTAAAAGATTA---TCGCCAGGTG-AAAAGTGACGCGGATGTGACCGATCTCATCAGT 837
Query 726 GGAGATACACAACGTCAAGACCCTTCACTTGACT 759
|| ||||| ||||||||||||||||||||||||
Sbjct 838 GG-GATACGTAACGTCAAGACCCTTCACTTGACT 870
Score = 259 bits (140), Expect = 1e-67
Identities = 190/214 (89%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 1462 GTTTGTAGGGATTCAAATTCCCCCAAATAACCAAATAAAGATGT-TGCGTATCATGCAGT 1520
|||||| ||||||| ||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 1029 GTTTGTGGGGATTCCAATTCCCTTGAATAACCAAATAAAGAT-TCTGCGTATCATGCAGT 1087
Query 1521 ACCAAGGAAGTGCAACCGTGTTGAAACACATTAGCCATTTCTTAATGAATATGGAGTGTC 1580
| |||||||||| ||| | | |||||||||| |||||||||||| |||||||||||||||
Sbjct 1088 ATCAAGGAAGTGAAACAGAGCTGAAACACATAAGCCATTTCTTACTGAATATGGAGTGTC 1147
Query 1581 TTGAAGTTGTGAAAGTTTATGTTGCACCTACAATGGATGACCTC-AAAAAGATGCAGCTC 1639
||||||||||| ||||| | |||||||||||| || |||||| | |||||| ||| ||||
Sbjct 1148 TTGAAGTTGTGGAAGTTAACGTTGCACCTACACTGTATGACCCCAAAAAAG-TGCGGCTC 1206
Query 1640 ACAGAGGATCTGTTGAAGCTTCCCGCAGCTTCAT 1673
|||||||||||||||||||||||| |||||||||
Sbjct 1207 ACAGAGGATCTGTTGAAGCTTCCCACAGCTTCAT 1240
Score = 217 bits (117), Expect = 6e-55
Identities = 141/152 (93%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 1 ATGATCTTCTTGTCAAAATCTTATCCTTCCTTGCC-ACAAAACAAGCTGCTTCAACCTCT 59
|||||||||||||| ||||||||||||||||| || || ||| |||||| ||||||||||
Sbjct 17 ATGATCTTCTTGTCCAAATCTTATCCTTCCTT-CCTACGAAAGAAGCTGTTTCAACCTCT 75
Query 60 CTTCTCTCCAAA-AGGTGGAGGACTCTATTTGCTCTCAGTCATAATCTTGACTTTGACGA 118
||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 76 CTTCTCT-CAAAGAGGTGGAGGACTCTGTTTACTCTCAGTCATAATCTTGACTTTGACGA 134
Query 119 TCCCATCTCCGGGCGTCCCGAAGATATCCGAA 150
||||||||||||||| ||||||||||||||||
Sbjct 135 TCCCATCTCCGGGCGCCCCGAAGATATCCGAA 166
Score = 128 bits (69), Expect = 3e-28
Identities = 94/106 (89%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 1225 aaCAACCTTGTTGAGTTAGTGTTTTCGAGTAAAAAAGGAAGGTTTGAAAGTGATTCTGCC 1284
|||||||| ||||| ||| ||||||||||||||| | |||||| ||||||| |||||||
Sbjct 925 AACAACCTCGTTGATTTAATGTTTTCGAGTAAAAGA-CAAGGTTGGAAAGTGCTTCTGCC 983
Query 1285 TCTTCTGCTAGAGCGTTCTCCAAACCTCAAAACTCTGGTTCTCTCG 1330
||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 984 TCTTCTGCTAGAGCGTTCTCCAAACCTAAAAAATCTTATTCTCTCG 1029
> Ahg937029 jgi|Araly1|937029|scaffold_501220.1
Length=1243
Score = 316 bits (171), Expect = 6e-85
Identities = 245/281 (87%), Gaps = 4/281 (1%)
Strand=Plus/Plus
Query 1429 TCTGCATCGTTACACTTTTGGACGAAGACATCGGTTTGTAGGGATTCAAATTCCCCCAAA 1488
|||| |||||||||| ||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 953 TCTGGATCGTTACACATTTGGTCGAAGACATCGGTTTGTAAGGATTCAAATTCCCTTGAA 1012
Query 1489 TAACCAAATAAAGATG-TTGCGTATCATGCAGTACCAAGGAAGTGCAACCGTGTTGAAAC 1547
|||||||||||||||| || |||||||||| || || |||||||||||| || ||||||
Sbjct 1013 TAACCAAATAAAGATGCTT-AGTATCATGCAATATCATGGAAGTGCAACCATGCTGAAAC 1071
Query 1548 ACATTAGCCATTTCTTAATGAATATGGAGTGTCTTGAAGTTGTGAAAGTTTATGTTGCAC 1607
|||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 1072 TCATTAGCCATTTCTTACTGAATATGGAGTGTCTTGAAGTTGTGAAAGTCTACGTTGCAC 1131
Query 1608 CTACAATGGATGACCTCAAAAAGATGCAGCTCACAGAGGATCTGTTGAAGCTTCCCGCAG 1667
|||||||||||||| || ||||||||| |||||||||||| | ||||||||||| |||
Sbjct 1132 GTACAATGGATGACCCCAGAAAGATGCAACTCACAGAGGATATTTTGAAGCTTCCAACAG 1191
Query 1668 CTTCAT-TAGAACTGAAGATCCAAGTCGTGTGATCATCATC 1707
|||||| ||| | ||||| ||||| |||||||| ||||
Sbjct 1192 CTTCATCTAGGG-TCAAGATACAAGTTATGTGATCACCATC 1231
Score = 204 bits (110), Expect = 5e-51
Identities = 346/455 (76%), Gaps = 36/455 (8%)
Strand=Plus/Plus
Query 256 TTCCCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGG-GAA--AACC 312
||||||||| |||| |||||||||||||||||||||||||||||| |||| | |||
Sbjct 429 TTCCCATCCAAAGTCTTCACCAGCACAACACTGGTTAAGCTGTCACTGGGAGTGGGAACA 488
Query 313 CA-AC---ACATCTATGAGTTTTC-TCCTGATACATCTCTCCCAGTACTAAAGGTTCTCC 367
| | ||| | | ||| ||| | | ||| |||||| |||| |||||||||||||
Sbjct 489 -AGATTTTACACCGAA-AGTGTTCCTTCAGATTTATCTCTTCCAGCACTAAAGGTTCTCT 546
Query 368 TCCTTGATTC--T-ATCTGGTTTT-GGAA-ATATCCA-TTAGCAAATGTATTTTTCGCTG 421
|||||||||| | || |||||| || || | || ||| |||||| ||| ||||||
Sbjct 547 TCCTTGATTCAATTATTTGGTTTAAGGGTGATCTACAATTATTAAATGTGTTTCTCGCTG 606
Query 422 CTTGCCCTGCACTTGAGGACTTAACCATACGTTACAATAATTTTAGAG--GAAGTTCAT- 478
||||||||||||| |||||||||||||||| ||| | | | | || ||| | |
Sbjct 607 CTTGCCCTGCACTCGAGGACTTAACCATACATTATA-TG-TGTG-GATCTGAAAACCCTC 663
Query 479 ACGTTATATCCAGCAAAAGCATTAAGAAACTCTCAGTT-ATCAATAGC-AGTAG-T-TG- 533
|||| ||||||||||||| ||||||||||||||| ||| | | || | | || | ||
Sbjct 664 ACGTCATATCCAGCAAAACCATTAAGAAACTCTC-GTTTACCTATGGTTA-TATCTATGA 721
Query 534 TTATGATGGTCATCAT---AGCGTTATTACACTTGATACACCCAATGTTGTCGACTTCTA 590
|||| ||||| || | || ||||| || |||| ||||| |||||||||||||||||
Sbjct 722 TTATTATGGTTATTTTTCTAGAATTATTTCATTTGACACACCGAATGTTGTCGACTTCTA 781
Query 591 CTACTCTGGTT-TTCTTCAGCCTAAAGATCCACATTGTAA-TTTAGATTCACTTGCCAAA 648
|||||| | || || || | | || ||| || || | ||| |||||| ||||||||
Sbjct 782 CTACTCAGATTATT-TTGGGAGTGAATCTCCGCAACGTCACTTT-GATTCAATTGCCAAA 839
Query 649 GCTACACTGGACCTTCATTTCTTAGAAGATGACAA 683
|||||| ||||||||||||||||| ||| ||||||
Sbjct 840 GCTACATTGGACCTTCATTTCTTAAAAGGTGACAA 874
> Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878
Length=948
Score = 287 bits (155), Expect = 5e-76
Identities = 350/440 (80%), Gaps = 30/440 (7%)
Strand=Plus/Plus
Query 259 CCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-A-ACCCAAC 316
||||||||||| |||||||||||||| |||||||| |||||| | ||||| | | |||
Sbjct 67 CCATCCCAAGTCTTCACCAGCACAACGCTGGTTAATCTGTCACT-GGGAACAGA-ACAAT 124
Query 317 ACATCT-ATGAG-TTTTCTCCTG-ATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTTG 373
|||| | || || |||||| | | ||||||||||||||| ||||||||||||||||||||
Sbjct 125 ACAT-TGAT-AGCTTTTCTGC-GAATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTG 181
Query 374 ATTCTATCTGGTTTTGGAAAT-ATCCATTAG-CAAATGTATTTTTCGCTGCTTGCCCTGC 431
|||| |||| ||||| | || ||| ||| | |||||||||| || |||||||||||||
Sbjct 182 ATTCAATCT-GTTTTACAGATAATCAATT-GTTAAATGTATTTCTCACTGCTTGCCCTGC 239
Query 432 ACTTGAGGACTTAACCATACGTTAC-A-ATAATTTTAG-AGGAAGTTCATACGTTATATC 488
||||||||||||||| |||| | || | | || | || | || | ||||||| |||||
Sbjct 240 ACTTGAGGACTTAACGATACATCACGAGAAAAATGAAGTAC-AA-T-CATACGTCATATC 296
Query 489 CAGCAAAAGCATTAAGAAACTCTCAGTTATCAATAGCAGT-AGTTGTTATGATGGTCATC 547
||||||| ||| || |||||||| |||| || || | | | | |||| || | ||
Sbjct 297 TAGCAAAACCATCAAAAAACTCTCTGTTACCATTAA-ATTTAATAATTATCTTGAT--TC 353
Query 548 ATAGCGTTATTACA-C--TTGATACACCCAATGTTGTCGACTTCTACTACTCTGGTTTTC 604
| ||| |||| | | |||| ||||| | |||||||||| |||||||||||| || ||
Sbjct 354 -TCCCGTCATTATATCAATTGACACACCTAGTGTTGTCGACCTCTACTACTCTGATTATC 412
Query 605 TTCAGCCTAAAGATCCACATTGT-AATTTAGATTCACTTGCCAAAGCTACACTGGACCTT 663
|| || |||| ||||| |||| |||| ||||||||||||||||||||| ||||||||
Sbjct 413 GTCGGCATAAATCTCCACGTTGTCAATTG-GATTCACTTGCCAAAGCTACATTGGACCTT 471
Query 664 CATTTCTTAGAAGATGACAA 683
|||||||||||| | |||||
Sbjct 472 CATTTCTTAGAAAAAGACAA 491
Score = 276 bits (149), Expect = 1e-72
Identities = 210/239 (88%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 1438 TTACACTTTTGGACGAAGACATCGGTTTGTAGGGATTCAAATTCCCCCAAATAACCAAAT 1497
|||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 687 TTACACATTTGGACGAAGACATCGGTTTGTAGGGATTCAAATACCCTTGAATATCCAAAT 746
Query 1498 AAAGATG-TTGCGTATCATGCAGTACCAAGGAAGTGCAACCGTGTTGAAACACATTAGCC 1556
||||||| || |||||| ||| || || ||||||||||||||| |||||||||||||||
Sbjct 747 AAAGATGCTTA-GTATCAAGCAATATCATGGAAGTGCAACCGTGCTGAAACACATTAGCC 805
Query 1557 ATTTCTTAATGAATATGGAGTGTCTTGAAGTTGTGAAAGTTTATGTTGCACCT-ACAATG 1615
|||||||| |||||||||| | ||||||||| ||||||||||| |||||| || | ||||
Sbjct 806 ATTTCTTACTGAATATGGAATATCTTGAAGTGGTGAAAGTTTACGTTGCAGCTGA-AATG 864
Query 1616 GATGAC-CTCAAAAAGATGCAGCTCACAGAGGATCTGTTGAAGCTTCCCGCAGCTTCAT 1673
|||||| | |||||||||||| |||||||||| |||||||||| |||| |||||||||
Sbjct 865 GATGACAC-CAAAAAGATGCAACTCACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCAT 922
> Ahg915934 jgi|Araly1|915934|Al_scaffold_0008_685
Length=417
Score = 233 bits (126), Expect = 6e-60
Identities = 302/385 (78%), Gaps = 20/385 (5%)
Strand=Plus/Plus
Query 407 ATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACAAT-AATTTT 465
|||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 32 ATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACAAAGAATATC 91
Query 466 AGAGGAAGTTCATACGTTATATCCAGCAAAAGC-ATTAAGAAACTCTCAGTTATCAATAG 524
| ||||| |||||| || |||||||||||| | ||||| |||||||| |||| | |||
Sbjct 92 A-AGGAAATTCATATGTCGTATCCAGCAAAA-CTATTAAAAAACTCTCGGTTACCTTTAG 149
Query 525 CAGTAGTTGTTA-TGATGGTCAT--CATAGCGTTATTACACTTGATACACCCAATGTTGT 581
| | ||| || | ||| | || | ||| | ||| || |||| ||||| ||||||||
Sbjct 150 CTTTGGTT-TTGCTTATGCT-ATTTC-TAGAATAATTTCATTTGACACACCAAATGTTGT 206
Query 582 CGACTTCTACTACTCTGGTTTTCTTCAGCCTAAAGATCCACATTGTAATTTAGATTCACT 641
||||||||||||||||| || | || | | || |||||| ||| | ||||||||
Sbjct 207 CGACTTCTACTACTCTGATTATATTT-G--TGAATCTCCACAATGTCGCTGGGATTCACT 263
Query 642 TGCCAAAGCTACACTGGACCTTCATTTCTTAGAA-GATGACAATAGCCAGGTGCAAAATG 700
||||||||| || |||||||| ||||||| || |||||||| || | ||||||||||
Sbjct 264 TGCCAAAGCAACGTTGGACCTTTATTTCTTT-AATGATGACAAGCGCTATGTGCAAAATG 322
Query 701 ACGCGGATGTAAAAAATCTCATCAA-GGAGATACACAACGTCAAGACCCTTCACTTGACT 759
|||||| || | ||||||||| || ||||| ||| |||||||||||||||||||||
Sbjct 323 GCGCGGAGGTGACTGATCTCATCACTGG-GATACGCAATGTCAAGACCCTTCACTTGACT 381
Query 760 TGCTTGG-CTGTCGAAGTCAGTTTT 783
| ||| ||||||| || | ||||
Sbjct 382 T-CTTCTACTGTCGAGGTGA-TTTT 404
> Ahg952164 jgi|Araly1|952164|scaffold_42800001.1
Length=1040
Score = 182 bits (98), Expect = 2e-44
Identities = 260/335 (78%), Gaps = 24/335 (7%)
Strand=Plus/Plus
Query 173 ACATTGACCACTTGATATGTAAGGCCATGCTACACA-GTCTTTCTGAGCTTCACCTACAG 231
||||||||| || ||||||||| ||| || ||| | || | || ||| |||| ||| |
Sbjct 220 ACATTGACCGCTGGATATGTAATGCCCTGGAACA-AGGTATCTCCGAGTTTCATCTAGAC 278
Query 232 ATAATATCTACATCG--TGGCTT---A-G-TTTCCCATCCCAAGTATTCACCAGCACAAC 284
|||| | |||||| | ||| || | | | ||||||| |||| ||||||||||||||
Sbjct 279 ATAAAACCTACATGGTATGG-TTGGCATGATCTCCCATCTGAAGTCTTCACCAGCACAAC 337
Query 285 ACTGGTTAAGCTGTCATTGGGGAA-AACCCAACACAT--CTATGAGTTTTCTCCTGATAC 341
|||||||||||||||||| ||||| ||| | || | | | || || || | |||||
Sbjct 338 ACTGGTTAAGCTGTCATT-GGGAACAACACTAC-GTTGCCAAGGA-CTTCCTTCGGATAC 394
Query 342 ATCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATTCTATCTGGT-TTTG-GAAATATCCA 399
||||||||||| ||||||| ||||| |||||||||| |||| | |||| | | ||| |
Sbjct 395 ATCTCTCCCAGCACTAAAGATTCTCTTCCTTGATTCAATCT--TATTTGAGGAGGATCAA 452
Query 400 TTAGCAAATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACAAT 459
| | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 453 TCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACAA- 511
Query 460 AATTT-T-AGAGGAAGTTCATACGTTATATCCAGC 492
| | | | | ||||| ||||||||| ||||||||
Sbjct 512 AGTATATCA-AGGAAATTCATACGTCGTATCCAGC 545
> Ahg936896 jgi|Araly1|936896|scaffold_501087.1
Length=804
Score = 182 bits (98), Expect = 2e-44
Identities = 287/374 (77%), Gaps = 30/374 (8%)
Strand=Plus/Plus
Query 176 TTGACCACTTGATATGTAAGGCCATGCTACACAGTCTTTCTGAGCTTCACCTA--CAGAT 233
|||| | || ||||||||||||| || |||| || | ||||||||||| ||| || |
Sbjct 355 TTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTACGCATAC 414
Query 234 AATATCTA-CATCGTGG-C-T-TAGT---TTCCCATCCCAAGTATTCACCAGCACAACAC 286
|| || | | |||| | | | || ||||||||| |||| ||||||||||||||||
Sbjct 415 AAAATGAATTGTTGTGGCCGTGTGGTGGATTCCCATCCGAAGTCTTCACCAGCACAACAC 474
Query 287 TGGTTAAGCTGTCATTGGGGAA-AA-CCCAACACAT-CTATGAGT-TTTCTCCTGATACA 342
|||||||||||||||| ||||| || | ||||| || | | | || || ||||||
Sbjct 475 TGGTTAAGCTGTCATT-GGGAACAAGATC-TCACATCCT-T-ACTATTCCTTGGGATACA 530
Query 343 TCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATTCTATCTGGTTT-TGGA-AAT-ATCCA 399
| ||| |||| ||||||||||||| |||||||||| || |||||| ||| || | | |
Sbjct 531 TATCTGCCAGCACTAAAGGTTCTCTTCCTTGATTCAATATGGTTTAAGGACGATAAACTA 590
Query 400 TTAGCAAATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACA-A 458
|| | ||||| ||| ||| |||||||||||||||||||||||||||||||| | | | |
Sbjct 591 TT-G--AATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACATGA-AGA 646
Query 459 TAATTT-TAGAGGAAGTTCATACGTTATATCCAGCAAAAGCATTAAGAAACTCTCAGTTA 517
| | | |||| ||| || | || ||||| ||||||| |||||||| |||||||||||
Sbjct 647 GA-TGTATAGA--AAGG-CAGAGGTCATATCAAGCAAAACCATTAAGAGACTCTCAGTTA 702
Query 518 TCAATAGCAGTAGT 531
| ||| || ||||
Sbjct 703 CCTATAACACTAGT 716
> Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009
Length=468
Score = 152 bits (82), Expect = 2e-35
Identities = 161/198 (81%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 257 TCCCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-A-ACCCA 314
|||||||| || | ||||||||||||| ||| |||||||||||||| ||||| | | |
Sbjct 20 TCCCATCCAAAATCTTCACCAGCACAAAACTCGTTAAGCTGTCATT-GGGAAGAGA-ATA 77
Query 315 ACACATCTATGAGTTTT-CTCCT-GATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTT 372
| ||| |||||| || | |||| ||||||||| | ||||||||||||| |||||
Sbjct 78 TTGCTTCT-CAAGTTTTCCT-TTGGATATATCTCTCCCTGCACTAAAGGTTCTCTTCCTT 135
Query 373 GATTCTATCTGGTTT-TGGAAATATCCATTAGCAAATGTATTTTTCGCTGCTTGCCCTGC 431
||||| ||||||||| ||| | ||| | || | ||||| ||| ||||||||||||||||
Sbjct 136 GATTCAATCTGGTTTAAGGACA-ATCAACTATCGAATGTGTTTCTCGCTGCTTGCCCTGC 194
Query 432 ACTTGAGGACTTAACCAT 449
||||||||||||||||||
Sbjct 195 ACTTGAGGACTTAACCAT 212
> Ahg897261 jgi|Araly1|897261|Al_scaffold_0005_1227
Length=885
Score = 65.8 bits (35), Expect = 2e-09
Identities = 207/284 (73%), Gaps = 35/284 (12%)
Strand=Plus/Plus
Query 418 GCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTAC-AATAA-T-TTTAGAGGAAGT 474
|||| |||||||||||||||||||||||||||| | || || || | ||| || | |
Sbjct 436 GCTGGTTGCCCTGCACTTGAGGACTTAACCATA-G--ACCAA-AAGTCTTTTCCGGGA-T 490
Query 475 T-C-ATACGTTATATCCAGCAAAAGCATTAAGAAACTCTC-A--GT-TATCAATAGCAGT 528
| | | ||||| | |||||||||| |||||||| |||||| | || ||| | || | ||
Sbjct 491 TGCCAAACGTTGTTTCCAGCAAAACCATTAAGAGACTCTCCATCGTCTAT-A-TA-C-GT 546
Query 529 A-GT-TGTTA-TGAT-GGTCATCATAGCGTTATTACACTTGATACACCCAATG-TTGTCG 583
| || | |||| ||| || | || | | | ||||| ||||| || | || ||
Sbjct 547 GCGAATGATGCTGATTGGTT-TCGCA-CGGT-TG-CGCTTGACACACCAAA-GCTTCTC- 600
Query 584 ACT-TCTACTACTCTGGTTTT-CTTCAGCCTAAAG-ATCCACATTGTAATTTAGATTCAC 640
|| ||| ||||||| | | || | || || | ||| |||||| |||||||| || |
Sbjct 601 ACCCTCTTCTACTCTACCTATGCT-CGGCATAG-GTATCGACATTGCAATTTAGACTCGC 658
Query 641 TTGCCAAAGCTACACTGGACCTTCATTTCTTAGAAGATGACAAT 684
||| |||||| ||||| || |||||||||| |||| |||| |||
Sbjct 659 TTGTCAAAGCAACACTTGATCTTCATTTCTCAGAAAATGA-AAT 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143553165356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5