BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44096.1 Length=3799 Score E Sequences producing significant alignments: (Bits) Value Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657 411 3e-113 Ahg937029 jgi|Araly1|937029|scaffold_501220.1 316 6e-85 Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878 287 5e-76 Ahg915934 jgi|Araly1|915934|Al_scaffold_0008_685 233 6e-60 Ahg952164 jgi|Araly1|952164|scaffold_42800001.1 182 2e-44 Ahg936896 jgi|Araly1|936896|scaffold_501087.1 182 2e-44 Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009 152 2e-35 Ahg897261 jgi|Araly1|897261|Al_scaffold_0005_1227 65.8 2e-09 > Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657 Length=1272 Score = 411 bits (222), Expect = 3e-113 Identities = 421/514 (82%), Gaps = 26/514 (5%) Strand=Plus/Plus Query 259 CCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-AACCCAACA 317 |||||| |||| ||||||||||||||||| |||||||||||| | ||||| | | | | Sbjct 370 CCATCCAAAGTCTTCACCAGCACAACACTAGTTAAGCTGTCACT-GGGAACAGGACTAGA 428 Query 318 CAT--CTATGAGTTTTCTCCTGATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTTGAT 375 | | | | || || |||| |||||||||||||||| |||||||||||||||||||||| Sbjct 429 C-TGCCCAAGA-CTTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGAT 486 Query 376 TC--T-ATCTGGTTTTGGAAAT-ATCCATTAGCAAATGTATTTTTCGCTGCTTGCCCTGC 431 || | |||||||| || || ||| |||| | ||||| || ||||||| |||||||| Sbjct 487 TCAATCTTCTGGTTTAGG-CATGATCAATTATCTAATGTGCTTCTCGCTGCATGCCCTGC 545 Query 432 ACTTGAGGACTTAACCATACGTTAC-AATAATTTTAGAGGA-AGTTCATACGTTATATCC 489 |||||||||||||||||||| |||| | | ||| | |||| | ||||||||| |||||| Sbjct 546 ACTTGAGGACTTAACCATACATTACGAGT-ATTATCCAGGACA-TTCATACGTCATATCC 603 Query 490 AGCAAAAGCATTAAGAAACTCTCAGTTATCAATAGCAGTAGTTGTTATGATGGTCA-TCA 548 |||||||||||||||||||||||||||| || || ||||||| ||||| || ||| || Sbjct 604 AGCAAAAGCATTAAGAAACTCTCAGTTACCATTAATAGTAGTTATTATGTTGATCAATC- 662 Query 549 TAGCGTTATTACACTTGATACACCCAATGTTGTCGACTTCTACTACTCTGGTTTTCTTCA 608 |||| || |||||||||| ||||| ||||||| |||| |||||||||||| || || || Sbjct 663 TAGCATTCTTACACTTGACACACCTAATGTTGCCGACCTCTACTACTCTGATTATCCTCG 722 Query 609 GCCTAAAGATCCACATTGT-AATTTAGATTCACTTGCCAAAGCTACACTGGACCTTCATT 667 || |||| ||||| |||| |||| |||||| |||| ||||||||| || ||||||||| Sbjct 723 GCGTAAATCTCCACGTTGTCAATTG-GATTCAGTTGCAAAAGCTACATTGAACCTTCATT 781 Query 668 TCTTAGAAGATGACAATAGCCAGGTGCAAAA-TGACGCGGATGTAAAAAATCTCATCAA- 725 ||||| ||||| | | |||||||| |||| |||||||||||| | ||||||||| Sbjct 782 TCTTAAAAGATTA---TCGCCAGGTG-AAAAGTGACGCGGATGTGACCGATCTCATCAGT 837 Query 726 GGAGATACACAACGTCAAGACCCTTCACTTGACT 759 || ||||| |||||||||||||||||||||||| Sbjct 838 GG-GATACGTAACGTCAAGACCCTTCACTTGACT 870 Score = 259 bits (140), Expect = 1e-67 Identities = 190/214 (89%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 1462 GTTTGTAGGGATTCAAATTCCCCCAAATAACCAAATAAAGATGT-TGCGTATCATGCAGT 1520 |||||| ||||||| ||||||| ||||||||||||||||| | ||||||||||||||| Sbjct 1029 GTTTGTGGGGATTCCAATTCCCTTGAATAACCAAATAAAGAT-TCTGCGTATCATGCAGT 1087 Query 1521 ACCAAGGAAGTGCAACCGTGTTGAAACACATTAGCCATTTCTTAATGAATATGGAGTGTC 1580 | |||||||||| ||| | | |||||||||| |||||||||||| ||||||||||||||| Sbjct 1088 ATCAAGGAAGTGAAACAGAGCTGAAACACATAAGCCATTTCTTACTGAATATGGAGTGTC 1147 Query 1581 TTGAAGTTGTGAAAGTTTATGTTGCACCTACAATGGATGACCTC-AAAAAGATGCAGCTC 1639 ||||||||||| ||||| | |||||||||||| || |||||| | |||||| ||| |||| Sbjct 1148 TTGAAGTTGTGGAAGTTAACGTTGCACCTACACTGTATGACCCCAAAAAAG-TGCGGCTC 1206 Query 1640 ACAGAGGATCTGTTGAAGCTTCCCGCAGCTTCAT 1673 |||||||||||||||||||||||| ||||||||| Sbjct 1207 ACAGAGGATCTGTTGAAGCTTCCCACAGCTTCAT 1240 Score = 217 bits (117), Expect = 6e-55 Identities = 141/152 (93%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 1 ATGATCTTCTTGTCAAAATCTTATCCTTCCTTGCC-ACAAAACAAGCTGCTTCAACCTCT 59 |||||||||||||| ||||||||||||||||| || || ||| |||||| |||||||||| Sbjct 17 ATGATCTTCTTGTCCAAATCTTATCCTTCCTT-CCTACGAAAGAAGCTGTTTCAACCTCT 75 Query 60 CTTCTCTCCAAA-AGGTGGAGGACTCTATTTGCTCTCAGTCATAATCTTGACTTTGACGA 118 ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 76 CTTCTCT-CAAAGAGGTGGAGGACTCTGTTTACTCTCAGTCATAATCTTGACTTTGACGA 134 Query 119 TCCCATCTCCGGGCGTCCCGAAGATATCCGAA 150 ||||||||||||||| |||||||||||||||| Sbjct 135 TCCCATCTCCGGGCGCCCCGAAGATATCCGAA 166 Score = 128 bits (69), Expect = 3e-28 Identities = 94/106 (89%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 1225 aaCAACCTTGTTGAGTTAGTGTTTTCGAGTAAAAAAGGAAGGTTTGAAAGTGATTCTGCC 1284 |||||||| ||||| ||| ||||||||||||||| | |||||| ||||||| ||||||| Sbjct 925 AACAACCTCGTTGATTTAATGTTTTCGAGTAAAAGA-CAAGGTTGGAAAGTGCTTCTGCC 983 Query 1285 TCTTCTGCTAGAGCGTTCTCCAAACCTCAAAACTCTGGTTCTCTCG 1330 ||||||||||||||||||||||||||| |||| ||| |||||||| Sbjct 984 TCTTCTGCTAGAGCGTTCTCCAAACCTAAAAAATCTTATTCTCTCG 1029 > Ahg937029 jgi|Araly1|937029|scaffold_501220.1 Length=1243 Score = 316 bits (171), Expect = 6e-85 Identities = 245/281 (87%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 1429 TCTGCATCGTTACACTTTTGGACGAAGACATCGGTTTGTAGGGATTCAAATTCCCCCAAA 1488 |||| |||||||||| ||||| |||||||||||||||||| |||||||||||||| || Sbjct 953 TCTGGATCGTTACACATTTGGTCGAAGACATCGGTTTGTAAGGATTCAAATTCCCTTGAA 1012 Query 1489 TAACCAAATAAAGATG-TTGCGTATCATGCAGTACCAAGGAAGTGCAACCGTGTTGAAAC 1547 |||||||||||||||| || |||||||||| || || |||||||||||| || |||||| Sbjct 1013 TAACCAAATAAAGATGCTT-AGTATCATGCAATATCATGGAAGTGCAACCATGCTGAAAC 1071 Query 1548 ACATTAGCCATTTCTTAATGAATATGGAGTGTCTTGAAGTTGTGAAAGTTTATGTTGCAC 1607 |||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| Sbjct 1072 TCATTAGCCATTTCTTACTGAATATGGAGTGTCTTGAAGTTGTGAAAGTCTACGTTGCAC 1131 Query 1608 CTACAATGGATGACCTCAAAAAGATGCAGCTCACAGAGGATCTGTTGAAGCTTCCCGCAG 1667 |||||||||||||| || ||||||||| |||||||||||| | ||||||||||| ||| Sbjct 1132 GTACAATGGATGACCCCAGAAAGATGCAACTCACAGAGGATATTTTGAAGCTTCCAACAG 1191 Query 1668 CTTCAT-TAGAACTGAAGATCCAAGTCGTGTGATCATCATC 1707 |||||| ||| | ||||| ||||| |||||||| |||| Sbjct 1192 CTTCATCTAGGG-TCAAGATACAAGTTATGTGATCACCATC 1231 Score = 204 bits (110), Expect = 5e-51 Identities = 346/455 (76%), Gaps = 36/455 (8%) Strand=Plus/Plus Query 256 TTCCCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGG-GAA--AACC 312 ||||||||| |||| |||||||||||||||||||||||||||||| |||| | ||| Sbjct 429 TTCCCATCCAAAGTCTTCACCAGCACAACACTGGTTAAGCTGTCACTGGGAGTGGGAACA 488 Query 313 CA-AC---ACATCTATGAGTTTTC-TCCTGATACATCTCTCCCAGTACTAAAGGTTCTCC 367 | | ||| | | ||| ||| | | ||| |||||| |||| ||||||||||||| Sbjct 489 -AGATTTTACACCGAA-AGTGTTCCTTCAGATTTATCTCTTCCAGCACTAAAGGTTCTCT 546 Query 368 TCCTTGATTC--T-ATCTGGTTTT-GGAA-ATATCCA-TTAGCAAATGTATTTTTCGCTG 421 |||||||||| | || |||||| || || | || ||| |||||| ||| |||||| Sbjct 547 TCCTTGATTCAATTATTTGGTTTAAGGGTGATCTACAATTATTAAATGTGTTTCTCGCTG 606 Query 422 CTTGCCCTGCACTTGAGGACTTAACCATACGTTACAATAATTTTAGAG--GAAGTTCAT- 478 ||||||||||||| |||||||||||||||| ||| | | | | || ||| | | Sbjct 607 CTTGCCCTGCACTCGAGGACTTAACCATACATTATA-TG-TGTG-GATCTGAAAACCCTC 663 Query 479 ACGTTATATCCAGCAAAAGCATTAAGAAACTCTCAGTT-ATCAATAGC-AGTAG-T-TG- 533 |||| ||||||||||||| ||||||||||||||| ||| | | || | | || | || Sbjct 664 ACGTCATATCCAGCAAAACCATTAAGAAACTCTC-GTTTACCTATGGTTA-TATCTATGA 721 Query 534 TTATGATGGTCATCAT---AGCGTTATTACACTTGATACACCCAATGTTGTCGACTTCTA 590 |||| ||||| || | || ||||| || |||| ||||| ||||||||||||||||| Sbjct 722 TTATTATGGTTATTTTTCTAGAATTATTTCATTTGACACACCGAATGTTGTCGACTTCTA 781 Query 591 CTACTCTGGTT-TTCTTCAGCCTAAAGATCCACATTGTAA-TTTAGATTCACTTGCCAAA 648 |||||| | || || || | | || ||| || || | ||| |||||| |||||||| Sbjct 782 CTACTCAGATTATT-TTGGGAGTGAATCTCCGCAACGTCACTTT-GATTCAATTGCCAAA 839 Query 649 GCTACACTGGACCTTCATTTCTTAGAAGATGACAA 683 |||||| ||||||||||||||||| ||| |||||| Sbjct 840 GCTACATTGGACCTTCATTTCTTAAAAGGTGACAA 874 > Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878 Length=948 Score = 287 bits (155), Expect = 5e-76 Identities = 350/440 (80%), Gaps = 30/440 (7%) Strand=Plus/Plus Query 259 CCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-A-ACCCAAC 316 ||||||||||| |||||||||||||| |||||||| |||||| | ||||| | | ||| Sbjct 67 CCATCCCAAGTCTTCACCAGCACAACGCTGGTTAATCTGTCACT-GGGAACAGA-ACAAT 124 Query 317 ACATCT-ATGAG-TTTTCTCCTG-ATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTTG 373 |||| | || || |||||| | | ||||||||||||||| |||||||||||||||||||| Sbjct 125 ACAT-TGAT-AGCTTTTCTGC-GAATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTG 181 Query 374 ATTCTATCTGGTTTTGGAAAT-ATCCATTAG-CAAATGTATTTTTCGCTGCTTGCCCTGC 431 |||| |||| ||||| | || ||| ||| | |||||||||| || ||||||||||||| Sbjct 182 ATTCAATCT-GTTTTACAGATAATCAATT-GTTAAATGTATTTCTCACTGCTTGCCCTGC 239 Query 432 ACTTGAGGACTTAACCATACGTTAC-A-ATAATTTTAG-AGGAAGTTCATACGTTATATC 488 ||||||||||||||| |||| | || | | || | || | || | ||||||| ||||| Sbjct 240 ACTTGAGGACTTAACGATACATCACGAGAAAAATGAAGTAC-AA-T-CATACGTCATATC 296 Query 489 CAGCAAAAGCATTAAGAAACTCTCAGTTATCAATAGCAGT-AGTTGTTATGATGGTCATC 547 ||||||| ||| || |||||||| |||| || || | | | | |||| || | || Sbjct 297 TAGCAAAACCATCAAAAAACTCTCTGTTACCATTAA-ATTTAATAATTATCTTGAT--TC 353 Query 548 ATAGCGTTATTACA-C--TTGATACACCCAATGTTGTCGACTTCTACTACTCTGGTTTTC 604 | ||| |||| | | |||| ||||| | |||||||||| |||||||||||| || || Sbjct 354 -TCCCGTCATTATATCAATTGACACACCTAGTGTTGTCGACCTCTACTACTCTGATTATC 412 Query 605 TTCAGCCTAAAGATCCACATTGT-AATTTAGATTCACTTGCCAAAGCTACACTGGACCTT 663 || || |||| ||||| |||| |||| ||||||||||||||||||||| |||||||| Sbjct 413 GTCGGCATAAATCTCCACGTTGTCAATTG-GATTCACTTGCCAAAGCTACATTGGACCTT 471 Query 664 CATTTCTTAGAAGATGACAA 683 |||||||||||| | ||||| Sbjct 472 CATTTCTTAGAAAAAGACAA 491 Score = 276 bits (149), Expect = 1e-72 Identities = 210/239 (88%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 1438 TTACACTTTTGGACGAAGACATCGGTTTGTAGGGATTCAAATTCCCCCAAATAACCAAAT 1497 |||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 687 TTACACATTTGGACGAAGACATCGGTTTGTAGGGATTCAAATACCCTTGAATATCCAAAT 746 Query 1498 AAAGATG-TTGCGTATCATGCAGTACCAAGGAAGTGCAACCGTGTTGAAACACATTAGCC 1556 ||||||| || |||||| ||| || || ||||||||||||||| ||||||||||||||| Sbjct 747 AAAGATGCTTA-GTATCAAGCAATATCATGGAAGTGCAACCGTGCTGAAACACATTAGCC 805 Query 1557 ATTTCTTAATGAATATGGAGTGTCTTGAAGTTGTGAAAGTTTATGTTGCACCT-ACAATG 1615 |||||||| |||||||||| | ||||||||| ||||||||||| |||||| || | |||| Sbjct 806 ATTTCTTACTGAATATGGAATATCTTGAAGTGGTGAAAGTTTACGTTGCAGCTGA-AATG 864 Query 1616 GATGAC-CTCAAAAAGATGCAGCTCACAGAGGATCTGTTGAAGCTTCCCGCAGCTTCAT 1673 |||||| | |||||||||||| |||||||||| |||||||||| |||| ||||||||| Sbjct 865 GATGACAC-CAAAAAGATGCAACTCACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCAT 922 > Ahg915934 jgi|Araly1|915934|Al_scaffold_0008_685 Length=417 Score = 233 bits (126), Expect = 6e-60 Identities = 302/385 (78%), Gaps = 20/385 (5%) Strand=Plus/Plus Query 407 ATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACAAT-AATTTT 465 |||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||| | Sbjct 32 ATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACAAAGAATATC 91 Query 466 AGAGGAAGTTCATACGTTATATCCAGCAAAAGC-ATTAAGAAACTCTCAGTTATCAATAG 524 | ||||| |||||| || |||||||||||| | ||||| |||||||| |||| | ||| Sbjct 92 A-AGGAAATTCATATGTCGTATCCAGCAAAA-CTATTAAAAAACTCTCGGTTACCTTTAG 149 Query 525 CAGTAGTTGTTA-TGATGGTCAT--CATAGCGTTATTACACTTGATACACCCAATGTTGT 581 | | ||| || | ||| | || | ||| | ||| || |||| ||||| |||||||| Sbjct 150 CTTTGGTT-TTGCTTATGCT-ATTTC-TAGAATAATTTCATTTGACACACCAAATGTTGT 206 Query 582 CGACTTCTACTACTCTGGTTTTCTTCAGCCTAAAGATCCACATTGTAATTTAGATTCACT 641 ||||||||||||||||| || | || | | || |||||| ||| | |||||||| Sbjct 207 CGACTTCTACTACTCTGATTATATTT-G--TGAATCTCCACAATGTCGCTGGGATTCACT 263 Query 642 TGCCAAAGCTACACTGGACCTTCATTTCTTAGAA-GATGACAATAGCCAGGTGCAAAATG 700 ||||||||| || |||||||| ||||||| || |||||||| || | |||||||||| Sbjct 264 TGCCAAAGCAACGTTGGACCTTTATTTCTTT-AATGATGACAAGCGCTATGTGCAAAATG 322 Query 701 ACGCGGATGTAAAAAATCTCATCAA-GGAGATACACAACGTCAAGACCCTTCACTTGACT 759 |||||| || | ||||||||| || ||||| ||| ||||||||||||||||||||| Sbjct 323 GCGCGGAGGTGACTGATCTCATCACTGG-GATACGCAATGTCAAGACCCTTCACTTGACT 381 Query 760 TGCTTGG-CTGTCGAAGTCAGTTTT 783 | ||| ||||||| || | |||| Sbjct 382 T-CTTCTACTGTCGAGGTGA-TTTT 404 > Ahg952164 jgi|Araly1|952164|scaffold_42800001.1 Length=1040 Score = 182 bits (98), Expect = 2e-44 Identities = 260/335 (78%), Gaps = 24/335 (7%) Strand=Plus/Plus Query 173 ACATTGACCACTTGATATGTAAGGCCATGCTACACA-GTCTTTCTGAGCTTCACCTACAG 231 ||||||||| || ||||||||| ||| || ||| | || | || ||| |||| ||| | Sbjct 220 ACATTGACCGCTGGATATGTAATGCCCTGGAACA-AGGTATCTCCGAGTTTCATCTAGAC 278 Query 232 ATAATATCTACATCG--TGGCTT---A-G-TTTCCCATCCCAAGTATTCACCAGCACAAC 284 |||| | |||||| | ||| || | | | ||||||| |||| |||||||||||||| Sbjct 279 ATAAAACCTACATGGTATGG-TTGGCATGATCTCCCATCTGAAGTCTTCACCAGCACAAC 337 Query 285 ACTGGTTAAGCTGTCATTGGGGAA-AACCCAACACAT--CTATGAGTTTTCTCCTGATAC 341 |||||||||||||||||| ||||| ||| | || | | | || || || | ||||| Sbjct 338 ACTGGTTAAGCTGTCATT-GGGAACAACACTAC-GTTGCCAAGGA-CTTCCTTCGGATAC 394 Query 342 ATCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATTCTATCTGGT-TTTG-GAAATATCCA 399 ||||||||||| ||||||| ||||| |||||||||| |||| | |||| | | ||| | Sbjct 395 ATCTCTCCCAGCACTAAAGATTCTCTTCCTTGATTCAATCT--TATTTGAGGAGGATCAA 452 Query 400 TTAGCAAATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACAAT 459 | | |||| ||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 453 TCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACAA- 511 Query 460 AATTT-T-AGAGGAAGTTCATACGTTATATCCAGC 492 | | | | | ||||| ||||||||| |||||||| Sbjct 512 AGTATATCA-AGGAAATTCATACGTCGTATCCAGC 545 > Ahg936896 jgi|Araly1|936896|scaffold_501087.1 Length=804 Score = 182 bits (98), Expect = 2e-44 Identities = 287/374 (77%), Gaps = 30/374 (8%) Strand=Plus/Plus Query 176 TTGACCACTTGATATGTAAGGCCATGCTACACAGTCTTTCTGAGCTTCACCTA--CAGAT 233 |||| | || ||||||||||||| || |||| || | ||||||||||| ||| || | Sbjct 355 TTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTACGCATAC 414 Query 234 AATATCTA-CATCGTGG-C-T-TAGT---TTCCCATCCCAAGTATTCACCAGCACAACAC 286 || || | | |||| | | | || ||||||||| |||| |||||||||||||||| Sbjct 415 AAAATGAATTGTTGTGGCCGTGTGGTGGATTCCCATCCGAAGTCTTCACCAGCACAACAC 474 Query 287 TGGTTAAGCTGTCATTGGGGAA-AA-CCCAACACAT-CTATGAGT-TTTCTCCTGATACA 342 |||||||||||||||| ||||| || | ||||| || | | | || || |||||| Sbjct 475 TGGTTAAGCTGTCATT-GGGAACAAGATC-TCACATCCT-T-ACTATTCCTTGGGATACA 530 Query 343 TCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATTCTATCTGGTTT-TGGA-AAT-ATCCA 399 | ||| |||| ||||||||||||| |||||||||| || |||||| ||| || | | | Sbjct 531 TATCTGCCAGCACTAAAGGTTCTCTTCCTTGATTCAATATGGTTTAAGGACGATAAACTA 590 Query 400 TTAGCAAATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACA-A 458 || | ||||| ||| ||| |||||||||||||||||||||||||||||||| | | | | Sbjct 591 TT-G--AATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACATGA-AGA 646 Query 459 TAATTT-TAGAGGAAGTTCATACGTTATATCCAGCAAAAGCATTAAGAAACTCTCAGTTA 517 | | | |||| ||| || | || ||||| ||||||| |||||||| ||||||||||| Sbjct 647 GA-TGTATAGA--AAGG-CAGAGGTCATATCAAGCAAAACCATTAAGAGACTCTCAGTTA 702 Query 518 TCAATAGCAGTAGT 531 | ||| || |||| Sbjct 703 CCTATAACACTAGT 716 > Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009 Length=468 Score = 152 bits (82), Expect = 2e-35 Identities = 161/198 (81%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 257 TCCCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-A-ACCCA 314 |||||||| || | ||||||||||||| ||| |||||||||||||| ||||| | | | Sbjct 20 TCCCATCCAAAATCTTCACCAGCACAAAACTCGTTAAGCTGTCATT-GGGAAGAGA-ATA 77 Query 315 ACACATCTATGAGTTTT-CTCCT-GATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTT 372 | ||| |||||| || | |||| ||||||||| | ||||||||||||| ||||| Sbjct 78 TTGCTTCT-CAAGTTTTCCT-TTGGATATATCTCTCCCTGCACTAAAGGTTCTCTTCCTT 135 Query 373 GATTCTATCTGGTTT-TGGAAATATCCATTAGCAAATGTATTTTTCGCTGCTTGCCCTGC 431 ||||| ||||||||| ||| | ||| | || | ||||| ||| |||||||||||||||| Sbjct 136 GATTCAATCTGGTTTAAGGACA-ATCAACTATCGAATGTGTTTCTCGCTGCTTGCCCTGC 194 Query 432 ACTTGAGGACTTAACCAT 449 |||||||||||||||||| Sbjct 195 ACTTGAGGACTTAACCAT 212 > Ahg897261 jgi|Araly1|897261|Al_scaffold_0005_1227 Length=885 Score = 65.8 bits (35), Expect = 2e-09 Identities = 207/284 (73%), Gaps = 35/284 (12%) Strand=Plus/Plus Query 418 GCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTAC-AATAA-T-TTTAGAGGAAGT 474 |||| |||||||||||||||||||||||||||| | || || || | ||| || | | Sbjct 436 GCTGGTTGCCCTGCACTTGAGGACTTAACCATA-G--ACCAA-AAGTCTTTTCCGGGA-T 490 Query 475 T-C-ATACGTTATATCCAGCAAAAGCATTAAGAAACTCTC-A--GT-TATCAATAGCAGT 528 | | | ||||| | |||||||||| |||||||| |||||| | || ||| | || | || Sbjct 491 TGCCAAACGTTGTTTCCAGCAAAACCATTAAGAGACTCTCCATCGTCTAT-A-TA-C-GT 546 Query 529 A-GT-TGTTA-TGAT-GGTCATCATAGCGTTATTACACTTGATACACCCAATG-TTGTCG 583 | || | |||| ||| || | || | | | ||||| ||||| || | || || Sbjct 547 GCGAATGATGCTGATTGGTT-TCGCA-CGGT-TG-CGCTTGACACACCAAA-GCTTCTC- 600 Query 584 ACT-TCTACTACTCTGGTTTT-CTTCAGCCTAAAG-ATCCACATTGTAATTTAGATTCAC 640 || ||| ||||||| | | || | || || | ||| |||||| |||||||| || | Sbjct 601 ACCCTCTTCTACTCTACCTATGCT-CGGCATAG-GTATCGACATTGCAATTTAGACTCGC 658 Query 641 TTGCCAAAGCTACACTGGACCTTCATTTCTTAGAAGATGACAAT 684 ||| |||||| ||||| || |||||||||| |||| |||| ||| Sbjct 659 TTGTCAAAGCAACACTTGATCTTCATTTCTCAGAAAATGA-AAT 701 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 143553165356 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5