BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44100.1
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937014 jgi|Araly1|937014|scaffold_501205.1 778 0.0
> Ahg937014 jgi|Araly1|937014|scaffold_501205.1
Length=499
Score = 778 bits (421), Expect = 0.0
Identities = 470/494 (95%), Gaps = 1/494 (0%)
Strand=Plus/Plus
Query 22 TCT-CAATCACTCATCAATGGCGATTTCTCAAGCTCAGCCTCTGCTTCTTCTCCTCTTAT 80
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCTACAATCACTCATCAATGGCGATTTCTCAAGCTCAGCCTCTGCTTCTTCTCCTCTTAT 63
Query 81 CAGTCTTCTTCTTACCTGCTTTGCACGCCACTTCTTTCACCTACTGCGATAAGAGGCTCG 140
|| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 64 CACTCTTCTTCTTACCTGCTTTACACGCAACTTCTTTCTCCTACTGCGATAAGAGGCTCG 123
Query 141 ATCCCGTTAAGGTCACGGGTGTGAAGATCTCCCCTGACCCTGTTGTGAGTGGTGCAGCCG 200
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 124 ATCCCGTTAAGGTCACGGGTGTGAAGATCTCTCCTGACCCTGTTGTGAGTGGTGAAGCTG 183
Query 201 CAACATTTAAGATTTTTGGTTCTACTGGCGAAGACATCTCTGGAGGAAAAGTAGTGATCA 260
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CAACATTTAAGATTTTGGGTTCTACTGGCGAAGACATCTCTGGAGGAAAAGTAGTGATCA 243
Query 261 GGGTTTTATACGTTGGGATTCCTGTCCATACCGAAACTCATGACCTCTGCGATGAGACGG 320
|||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 244 GGGTTTCATACTTTGGGATTCCTGTTCATACCGAAACTCATGACCTCTGCGAGGAGACGG 303
Query 321 CATGTCCGGTTGCACCTGGCAGCTTTGTGCTTTCTCATTCTCAAACACTCCCTTCAATTA 380
| || ||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 304 CCTGCCCGATTGCACCAGGCAGCTTTGTGCTTTCTCATTCCCAAACACTCCCCTCAATTA 363
Query 381 CACCACCTGGTACTTACACGCTAAAGATGACAATCAACGACAAGAATGGCGGAAGACTAA 440
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 364 CACCACCTGGCACTTACACGCTTAAGATGACAATCAACGACAAGAATGGCGGAAGACTAA 423
Query 441 CGTGTATCAGCTTCAAATTCAAGATCACAGTAGGTTCTGCGGTCTTTGCTAGTTAAGTTT 500
|||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 424 CGTGCATCAGCTTCAAATTCAAGATCACAATAGGTTCCGCGGTCTTTGCTAGTTAAGTTT 483
Query 501 TATGGTGTAAATTG 514
||||||||||||||
Sbjct 484 TATGGTGTAAATTG 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22645012698
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5