BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44120.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318596 jgi|Araly1|318596|fgenesh1_pm.C_scaffold_3001612 1327 0.0
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 60.2 4e-08
Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173 54.7 2e-06
> Ahg318596 jgi|Araly1|318596|fgenesh1_pm.C_scaffold_3001612
Length=1119
Score = 1327 bits (718), Expect = 0.0
Identities = 1015/1152 (88%), Gaps = 46/1152 (4%)
Strand=Plus/Plus
Query 55 ATGACGTTACCGGAGCTTCCAAAGGATTTAGTAGAAGAGATACTCTGTTTTGTTCCGGCC 114
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 1 ATGACGTTACCGGAGCTTCCAAAGGATTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCC 60
Query 115 ACATCTCTGAAGCGATTACGATCCAGTTGC-AAAGAATGGAATCGTTTATTCAAAGATGA 173
||||||||||| ||||||||||||| |||| |||| |||||| | |||||||||||||||
Sbjct 61 ACATCTCTGAAACGATTACGATCCACTTGCAAAAG-ATGGAACCATTTATTCAAAGATGA 119
Query 174 CAAGAGATTCGCAAGAAAGCACATTGAAAAAGCCGCAAAGCAGTTTCAACCTCTCACGTT 233
|||||||||||||||||||||| ||| |||||||||||||||| || |||||||| |||
Sbjct 120 TAAGAGATTCGCAAGAAAGCACACTGACAAAGCCGCAAAGCAGTATCTACCTCTCATGTT 179
Query 234 GACGAAGAACTACAGGATTTGTCCTATAAACGTCAATCTCCATGGAACTACTCCATCTCT 293
||| ||| |||||||||||||||||||||||| | | || ||||||||||||
Sbjct 180 GACCAAGGACTACAGGATTTGTCCTATAAACG------T-C----AA-TACTCCATCTCT 227
Query 294 AGAGGTTAAAAATGAGGTCAGCTTAGTCGATCCTCACTCTAAGAATTCAGCAGCTCAGTT 353
|||||||||||||||| | |||||| |||| || ||| ||||||||||||| ||
Sbjct 228 AGAGGTTAAAAATGAGCTTAGCTTACTCGA---TC-CTC-----ATTCAGCAGCTCAATT 278
Query 354 CAATATAGATCGAGTCTTTCACTGTGATGGCTTGTTGTTATGCACCTCCCAAAAAGATTC 413
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 279 CAACATAGATCGAGTCTTTCACTGTGATGGCTTGTTGTTATGCACATCCCAAAAAGAATC 338
Query 414 AAGATTCGTCGTTTGGAACCCTTTAACTGGTGTAACCAAGTGGATCGAACTCGGTGATCG 473
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 339 AAGATTCGTGGTTTGGAACCCTTTAACTGGTGTAACCAAGTGGATCGAACTCGGCGATCG 398
Query 474 TTACAACGAAGGTATGGCTTTTATTCTTGGATATGACAACAAGTCCTGTAATAAGAGCTA 533
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 399 TTACAACGAAGGTATGGCTTTTGTTCTTGGATATGACAACAAGTCCTGTAATAAGAGCTA 458
Query 534 CAAAGCCATGAGCTTTAATTATT-TAGACAAGGATTCTGAAATCTACGAGTTTAGCTCTG 592
|||| | |||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 459 CAAAATCTTGAGCTTTAATTTTTGTA-ACAAGGATTCTGAAATCTACGAGTTTAGCTCTG 517
Query 593 ACTCATGGAGGGTTATTGATGATATTATCAAGCCACCCCACTACATGGACTACTTTAGAG 652
||||||||||||||||||||||||| |||||||| ||||||| |||| |||| ||||
Sbjct 518 ACTCATGGAGGGTTATTGATGATAT---CAAGCCACGCCACTACTTGGAATACTCTAGAA 574
Query 653 AGTGTTTCTCTTTGAAGGGAAACACTTACTGGTTGGGTATAGATAGAAGACGAAGGCCAC 712
||||| | |||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 575 AGTGTGTGTCTTTGAAGGGAAACACTTACTGGTTTGGTATAGATAGAAGACGAAGTCTAT 634
Query 713 CGGACCTTCGCATAACCTTGATCAAATTTGATTTTGGAACAGAGAGATTTGGTTATGTTT 772
||||| | |||| ||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct 635 GGGACCCTAGCATGGCCTTGCTCAAATTTGATTTTGGAACAGAGAAATTTGGGTATGTTC 694
Query 773 CTCTGCCTCCCCCCTGTCAAGTGCATGGTTTTGAGGCTTCTAATCTTTCCGTTGTCGGAG 832
||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 695 CTCTGCCTCGTCCATGTCAAGTGCATGGTTTTGAGGCTTCTAATCTTTCCGTTGTCAGAG 754
Query 833 ACGAGAAGCTTTCGGTGTTAGTACAGGGCGGTTCTACATCCAAGACTGAGGTATGGGTGA 892
|||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 755 ACGAAAAGCTTTCGGTGTTATTAGAGGACGGTTCTACATCCAAGACTGAGGTATGGGTGA 814
Query 893 CAAGTAAGATTGGTGAGGCCAATGTGGTGTCGTGGAGCAAGGTGTTATCATTGTATCCGA 952
||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||
Sbjct 815 CAAATAAGATTGGTGAGAACAATGTGGTGTCGTGGAGCAAGGTCTTAGCATTGTATCCGA 874
Query 953 -AGCCTGACGTTGGTTTTTGGCATGGC-CTAAGTTTCTTGCTAGACGAGGAGAAGAAAGT 1010
||| ||| || ||| |||||||| | ||||| ||||||||||||||||||||||||
Sbjct 875 GAGC-TGA--TT--TTT--GGCATGGCGC-AAGTTGCTTGCTAGACGAGGAGAAGAAAGT 926
Query 1011 CGTCTTGTGTTGTAAGAGTAAGGGATGGATGGAGGAAGAAGACGAGGAGAATGTTTACAG 1070
|||| ||||||||||||||||| ||||||||||||||| |||| | || || ||||
Sbjct 927 CGTCCTGTGTTGTAAGAGTAAGAGATGGATGGAGGAAGGAGAC-A--AG---GTATACAT 980
Query 1071 TGTTGGGGAGGATACTAAATTCATACTACTGAATTTTGGAGTTCAGACAATTGGAGGATA 1130
|||||| ||||||| |||| ||| | || || ||| ||||||| | ||||||| |||||
Sbjct 981 TGTTGGAGAGGATAATAAAGTCAAAATAATGGATTCTGGAGTTTATACAATTGAAGGATC 1040
Query 1131 TTCG-CCAATTATTGTTAATTATGTTCCAAGTTTGGGTCAGATCGAGCTAGCTGGAAGCA 1189
|| | |||| |||| |||||||| |||||||||||| ||| |||||| ||||||| |||
Sbjct 1041 TT-GTCCAACTATTCTTAATTATATTCCAAGTTTGGTTCAAATCGAGAGAGCTGGAGGCA 1099
Query 1190 AAAGGAAAAGAG 1201
|||| |||||||
Sbjct 1100 AAAGAAAAAGAG 1111
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 994 GACGAGGAGAAGAAAGTCGTCTTGTGTTGTAA 1025
||||||||||||||||||||||||||||||||
Sbjct 948 GACGAGGAGAAGAAAGTCGTCTTGTGTTGTAA 979
> Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173
Length=972
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 997 GAGGAGAAGAAAGTCGTCTTGTGTTGTAA 1025
|||||||||||||||||||||||||||||
Sbjct 901 GAGGAGAAGAAAGTCGTCTTGTGTTGTAA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5